Wall clock time and date at job start Tue Mar 31 2020 23:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87363 * 2 1 4 4 C 1.54316 * 109.88683 * 121.01569 * 2 1 3 5 5 C 1.55154 * 102.94149 * 97.22187 * 4 2 1 6 6 H 1.08999 * 111.00567 * 277.39252 * 5 4 2 7 7 N 1.46901 * 111.00247 * 153.57886 * 5 4 2 8 8 C 1.46902 * 110.99844 * 154.99916 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00004 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99804 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00499 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99671 * 179.72159 * 12 11 9 15 15 N 1.31411 * 119.99899 * 180.27617 * 14 12 11 16 16 Si 1.86800 * 120.00160 * 0.27431 * 14 12 11 17 17 H 1.48508 * 109.46685 * 89.99768 * 16 14 12 18 18 H 1.48494 * 109.47357 * 209.99847 * 16 14 12 19 19 H 1.48494 * 109.47227 * 330.00365 * 16 14 12 20 20 C 1.54903 * 101.58213 * 35.50690 * 5 4 2 21 21 N 1.47021 * 109.88139 * 238.82770 * 2 1 3 22 22 C 1.34776 * 125.65219 * 59.49991 * 21 2 1 23 23 O 1.21568 * 119.99662 * 359.97438 * 22 21 2 24 24 C 1.47745 * 120.00234 * 180.02562 * 22 21 2 25 25 C 1.39353 * 124.11752 * 179.72531 * 24 22 21 26 26 N 1.30091 * 112.14578 * 179.84950 * 25 24 22 27 27 S 1.55922 * 108.75436 * 0.39606 * 26 25 24 28 28 N 1.31491 * 124.11912 * 0.02562 * 24 22 21 29 29 H 1.09007 * 109.46793 * 298.98462 * 1 2 3 30 30 H 1.08998 * 109.47403 * 58.97750 * 1 2 3 31 31 H 1.08989 * 109.47271 * 178.98518 * 1 2 3 32 32 H 1.09005 * 110.71966 * 338.86125 * 4 2 1 33 33 H 1.08998 * 110.87540 * 215.65781 * 4 2 1 34 34 H 1.00895 * 111.00207 * 278.95259 * 7 5 4 35 35 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 36 36 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 37 37 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 38 38 H 0.97005 * 120.00019 * 180.02562 * 15 14 12 39 39 H 1.08996 * 110.37230 * 81.82701 * 20 5 4 40 40 H 1.09008 * 110.36655 * 204.15473 * 20 5 4 41 41 H 1.08005 * 123.92602 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7477 1.2437 5 6 2.3518 -2.1684 0.6953 6 1 1.4453 -2.7728 0.6648 7 7 3.3966 -2.8309 1.4876 8 6 3.2808 -4.2924 1.3943 9 6 4.3669 -4.9358 2.2174 10 8 5.1592 -4.2450 2.8226 11 7 4.4580 -6.2791 2.2810 12 6 5.4457 -6.8644 3.0302 13 1 6.1506 -6.2492 3.5697 14 6 5.5360 -8.2492 3.1005 15 7 6.4794 -8.8103 3.8229 16 14 4.3163 -9.3133 2.1680 17 1 4.8440 -9.5961 0.8089 18 1 4.1158 -10.5913 2.8970 19 1 3.0196 -8.5983 2.0565 20 6 2.8568 -1.8508 -0.7343 21 7 2.0299 -0.7156 -1.1830 22 6 1.7744 -0.3885 -2.4652 23 8 1.0749 0.5728 -2.7194 24 6 2.3434 -1.1987 -3.5618 25 6 2.1307 -0.9419 -4.9149 26 7 2.7435 -1.7983 -5.6788 27 16 3.4976 -2.8236 -4.7781 28 7 3.1074 -2.2533 -3.3799 29 1 -0.3633 0.4980 0.8990 30 1 -0.3634 0.5296 -0.8806 31 1 -0.3633 -1.0274 -0.0182 32 1 1.2918 -0.7862 2.0212 33 1 2.9652 -0.2821 1.6214 34 1 4.3148 -2.5222 1.2055 35 1 3.3841 -4.5993 0.3535 36 1 2.3065 -4.6044 1.7702 37 1 3.8242 -6.8316 1.7973 38 1 6.5427 -9.7771 3.8717 39 1 3.9091 -1.5677 -0.7108 40 1 2.7087 -2.7099 -1.3886 41 1 1.5296 -0.1251 -5.2863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725576375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:25 Heat of formation + Delta-G solvation = 12.247619 kcal Electronic energy + Delta-G solvation = -26716.386777 eV Core-core repulsion = 22759.220616 eV Total energy + Delta-G solvation = -3957.166161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60355 -40.09159 -38.59691 -37.83791 -34.98909 -34.20275 -33.88157 -31.95596 -31.70518 -30.09752 -27.87779 -26.54154 -25.96038 -24.28358 -23.64233 -21.97799 -20.93430 -19.83567 -19.56994 -19.39171 -18.42283 -17.57027 -16.67609 -16.60779 -16.01152 -15.80860 -15.49657 -15.26610 -14.84177 -14.66959 -14.08004 -13.91465 -13.62167 -13.50785 -13.08984 -13.05128 -12.66150 -12.60358 -12.50040 -12.22779 -12.16661 -12.00392 -11.76969 -11.64586 -11.60195 -11.22931 -11.14341 -11.03102 -10.82905 -10.62802 -10.37684 -10.00819 -9.65285 -9.60966 -9.00854 -8.64962 -8.26510 -8.20329 -6.34350 -3.85967 0.01059 0.98120 1.13076 1.20477 2.50340 2.72846 2.99497 3.03418 3.12397 3.68870 3.79656 4.05178 4.07623 4.22608 4.36525 4.51104 4.69805 4.76159 4.83629 4.91732 5.04575 5.06639 5.15115 5.18053 5.37859 5.49218 5.57867 5.59148 5.68841 5.73752 5.79580 5.83949 5.91526 5.95442 6.04958 6.16497 6.97158 7.06469 7.43620 7.54327 7.65871 8.10804 8.55827 8.91465 9.38720 9.78293 10.78721 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.002875 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.994381 B = 9737.588690 C =11462.748567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.081 0.919 4 C -0.117 4.117 5 C 0.076 3.924 6 H 0.092 0.908 7 N -0.650 5.650 8 C 0.046 3.954 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.881 5.881 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.071 3.929 21 N -0.590 5.590 22 C 0.618 3.382 23 O -0.525 6.525 24 C 0.013 3.987 25 C 0.089 3.911 26 N -0.578 5.578 27 S 0.721 5.279 28 N -0.541 5.541 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.354 0.646 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 13.810 -17.046 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.036 4.036 6 H 0.111 0.889 7 N -0.282 5.282 8 C -0.087 4.087 9 C 0.235 3.765 10 O -0.446 6.446 11 N -0.229 5.229 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.055 4.055 21 N -0.323 5.323 22 C 0.401 3.599 23 O -0.401 6.401 24 C -0.162 4.162 25 C -0.104 4.104 26 N -0.419 5.419 27 S 0.763 5.237 28 N -0.391 5.391 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.062 12.988 -16.714 23.883 hybrid contribution -1.509 0.103 -1.194 1.927 sum -12.570 13.091 -17.908 25.497 Atomic orbital electron populations 1.22165 0.94305 1.02544 1.03157 1.21723 0.94996 0.96442 0.83621 0.90094 1.22759 1.02675 0.94429 0.95692 1.22837 0.96105 0.95646 0.89003 0.88945 1.60138 1.07157 1.04664 1.56265 1.21788 0.99959 0.88461 0.98459 1.19668 0.87784 0.82618 0.86446 1.90574 1.44122 1.61997 1.47927 1.42204 1.29709 1.05429 1.45552 1.19433 1.07849 0.91035 1.25107 0.86255 1.25043 0.97201 0.96541 0.97342 1.69622 1.32123 1.11262 1.39043 0.86674 0.81083 0.81119 0.80526 1.19634 1.20154 1.19486 1.23494 0.95069 0.89571 0.97342 1.48215 1.49395 1.30342 1.04303 1.16347 0.80266 0.83073 0.80224 1.90820 1.38570 1.27891 1.82816 1.22464 1.01775 0.95878 0.96095 1.23755 0.99306 0.99641 0.87738 1.72260 1.17517 1.12270 1.39856 1.79324 1.36050 1.26599 0.81691 1.72749 1.18005 1.14837 1.33483 0.91252 0.91112 0.92402 0.89195 0.89591 0.82462 0.93522 0.89319 0.79694 0.91579 0.90785 0.88489 0.76978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.05 37.16 0.34 -1.08 16 2 C 0.13 1.25 3.49 -66.96 -0.23 1.02 16 3 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 4 C -0.12 -1.08 6.19 -24.90 -0.15 -1.23 16 5 C 0.08 0.80 3.38 -65.57 -0.22 0.57 16 6 H 0.09 0.93 7.83 -51.93 -0.41 0.52 16 7 N -0.65 -8.99 6.04 -105.73 -0.64 -9.63 16 8 C 0.05 0.70 6.03 -4.97 -0.03 0.67 16 9 C 0.45 9.73 7.82 -10.98 -0.09 9.64 16 10 O -0.56 -14.61 15.78 5.55 0.09 -14.53 16 11 N -0.59 -13.56 5.09 -10.96 -0.06 -13.61 16 12 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 13 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 15 N -0.88 -25.36 13.96 55.50 0.77 -24.58 16 16 Si 0.88 18.89 27.74 -169.99 -4.72 14.17 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.27 -5.25 6.51 56.52 0.37 -4.88 16 20 C 0.07 0.72 5.68 -2.53 -0.01 0.70 16 21 N -0.59 -6.13 3.08 -164.16 -0.51 -6.64 16 22 C 0.62 6.99 7.63 -12.38 -0.09 6.90 16 23 O -0.53 -6.83 15.71 5.31 0.08 -6.75 16 24 C 0.01 0.13 6.71 -83.71 -0.56 -0.43 16 25 C 0.09 0.78 11.22 -17.87 -0.20 0.58 16 26 N -0.58 -5.21 11.41 19.42 0.22 -4.98 16 27 S 0.72 5.45 23.69 -107.50 -2.55 2.90 16 28 N -0.54 -5.21 8.29 23.18 0.19 -5.01 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.72 6.76 -51.93 -0.35 0.37 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.76 7.83 -51.93 -0.41 0.36 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.35 5.13 7.89 -39.29 -0.31 4.82 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 37 H 0.37 7.44 5.76 -40.82 -0.24 7.20 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 40 H 0.10 1.02 6.09 -51.92 -0.32 0.70 16 41 H 0.21 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -33.53 356.82 -8.17 -41.70 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.94 Total: 11.82 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -1.51 Total: 9.76 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.01 Total: -64.46 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.17 Total: -21.27 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.72 Total: 14.17 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -2.55 Total: 2.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.53 -8.17 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725576375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.950 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds