Wall clock time and date at job start Tue Mar 31 2020 23:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87363 * 2 1 4 4 C 1.54316 * 109.88683 * 121.01569 * 2 1 3 5 5 C 1.55154 * 102.94149 * 97.22187 * 4 2 1 6 6 H 1.08999 * 111.00567 * 277.39252 * 5 4 2 7 7 N 1.46901 * 111.00247 * 153.57886 * 5 4 2 8 8 C 1.46902 * 110.99844 * 154.99916 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00004 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99804 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00499 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99671 * 179.72159 * 12 11 9 15 15 N 1.31411 * 119.99899 * 180.27617 * 14 12 11 16 16 Si 1.86800 * 120.00160 * 0.27431 * 14 12 11 17 17 H 1.48508 * 109.46685 * 89.99768 * 16 14 12 18 18 H 1.48494 * 109.47357 * 209.99847 * 16 14 12 19 19 H 1.48494 * 109.47227 * 330.00365 * 16 14 12 20 20 C 1.54903 * 101.58213 * 35.50690 * 5 4 2 21 21 N 1.47021 * 109.88139 * 238.82770 * 2 1 3 22 22 C 1.34776 * 125.65219 * 59.49991 * 21 2 1 23 23 O 1.21568 * 119.99662 * 359.97438 * 22 21 2 24 24 C 1.47745 * 120.00234 * 180.02562 * 22 21 2 25 25 C 1.39353 * 124.11752 * 179.72531 * 24 22 21 26 26 N 1.30091 * 112.14578 * 179.84950 * 25 24 22 27 27 S 1.55922 * 108.75436 * 0.39606 * 26 25 24 28 28 N 1.31491 * 124.11912 * 0.02562 * 24 22 21 29 29 H 1.09007 * 109.46793 * 298.98462 * 1 2 3 30 30 H 1.08998 * 109.47403 * 58.97750 * 1 2 3 31 31 H 1.08989 * 109.47271 * 178.98518 * 1 2 3 32 32 H 1.09005 * 110.71966 * 338.86125 * 4 2 1 33 33 H 1.08998 * 110.87540 * 215.65781 * 4 2 1 34 34 H 1.00895 * 111.00207 * 278.95259 * 7 5 4 35 35 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 36 36 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 37 37 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 38 38 H 0.97005 * 120.00019 * 180.02562 * 15 14 12 39 39 H 1.08996 * 110.37230 * 81.82701 * 20 5 4 40 40 H 1.09008 * 110.36655 * 204.15473 * 20 5 4 41 41 H 1.08005 * 123.92602 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7477 1.2437 5 6 2.3518 -2.1684 0.6953 6 1 1.4453 -2.7728 0.6648 7 7 3.3966 -2.8309 1.4876 8 6 3.2808 -4.2924 1.3943 9 6 4.3669 -4.9358 2.2174 10 8 5.1592 -4.2450 2.8226 11 7 4.4580 -6.2791 2.2810 12 6 5.4457 -6.8644 3.0302 13 1 6.1506 -6.2492 3.5697 14 6 5.5360 -8.2492 3.1005 15 7 6.4794 -8.8103 3.8229 16 14 4.3163 -9.3133 2.1680 17 1 4.8440 -9.5961 0.8089 18 1 4.1158 -10.5913 2.8970 19 1 3.0196 -8.5983 2.0565 20 6 2.8568 -1.8508 -0.7343 21 7 2.0299 -0.7156 -1.1830 22 6 1.7744 -0.3885 -2.4652 23 8 1.0749 0.5728 -2.7194 24 6 2.3434 -1.1987 -3.5618 25 6 2.1307 -0.9419 -4.9149 26 7 2.7435 -1.7983 -5.6788 27 16 3.4976 -2.8236 -4.7781 28 7 3.1074 -2.2533 -3.3799 29 1 -0.3633 0.4980 0.8990 30 1 -0.3634 0.5296 -0.8806 31 1 -0.3633 -1.0274 -0.0182 32 1 1.2918 -0.7862 2.0212 33 1 2.9652 -0.2821 1.6214 34 1 4.3148 -2.5222 1.2055 35 1 3.3841 -4.5993 0.3535 36 1 2.3065 -4.6044 1.7702 37 1 3.8242 -6.8316 1.7973 38 1 6.5427 -9.7771 3.8717 39 1 3.9091 -1.5677 -0.7108 40 1 2.7087 -2.7099 -1.3886 41 1 1.5296 -0.1251 -5.2863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725576375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:24 Heat of formation + Delta-G solvation = -15.135691 kcal Electronic energy + Delta-G solvation = -26717.574206 eV Core-core repulsion = 22759.220616 eV Total energy + Delta-G solvation = -3958.353591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32325 -40.89850 -40.20976 -38.83647 -36.27662 -35.63875 -34.88510 -33.72264 -32.71186 -31.10642 -28.61420 -27.98439 -26.75459 -25.60938 -24.71339 -22.77564 -21.72501 -21.26534 -20.52490 -20.35569 -20.17165 -18.36749 -17.87417 -17.39801 -17.26217 -16.78195 -16.61458 -16.44798 -16.12462 -15.71025 -15.36572 -15.02050 -14.72978 -14.59084 -14.43249 -14.21577 -14.04405 -13.66360 -13.45698 -13.29465 -13.12190 -13.01040 -12.83763 -12.65638 -12.39224 -12.36319 -12.29641 -11.99215 -11.91874 -11.78549 -11.59370 -11.48675 -11.18674 -10.40857 -10.30854 -10.22634 -9.80605 -9.33544 -8.39133 -5.99953 -0.68322 0.32704 0.42342 0.58575 1.32330 1.37527 1.46680 1.73386 1.93087 1.98646 2.25176 2.69404 3.16798 3.17767 3.36407 3.49309 3.67398 3.74639 4.01613 4.02807 4.11044 4.18859 4.28552 4.42730 4.44856 4.45146 4.56774 4.70448 4.77798 4.81136 4.97054 5.06638 5.12773 5.24762 5.35893 5.43815 5.54993 5.92197 6.04320 6.23794 6.34411 6.61761 6.84190 6.90741 7.42417 7.99095 8.78565 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.002875 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.994381 B = 9737.588690 C =11462.748567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.079 0.921 4 C -0.110 4.110 5 C 0.082 3.918 6 H 0.107 0.893 7 N -0.664 5.664 8 C 0.060 3.940 9 C 0.449 3.551 10 O -0.614 6.614 11 N -0.591 5.591 12 C -0.328 4.328 13 H 0.055 0.945 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.964 3.036 17 H -0.256 1.256 18 H -0.278 1.278 19 H -0.230 1.230 20 C 0.078 3.922 21 N -0.590 5.590 22 C 0.615 3.385 23 O -0.549 6.549 24 C -0.003 4.003 25 C 0.090 3.910 26 N -0.597 5.597 27 S 0.777 5.223 28 N -0.558 5.558 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.348 0.652 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.892 13.075 -19.142 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.030 4.030 6 H 0.125 0.875 7 N -0.296 5.296 8 C -0.072 4.072 9 C 0.237 3.763 10 O -0.498 6.498 11 N -0.233 5.233 12 C -0.457 4.457 13 H 0.073 0.927 14 C -0.214 4.214 15 N -0.577 5.577 16 Si 0.784 3.216 17 H -0.180 1.180 18 H -0.203 1.203 19 H -0.153 1.153 20 C -0.047 4.047 21 N -0.322 5.322 22 C 0.399 3.601 23 O -0.427 6.427 24 C -0.176 4.176 25 C -0.102 4.102 26 N -0.438 5.438 27 S 0.819 5.181 28 N -0.409 5.409 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.168 0.832 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.801 12.287 -18.818 26.374 hybrid contribution -0.527 0.412 -0.521 0.848 sum -14.328 12.699 -19.339 27.213 Atomic orbital electron populations 1.22103 0.93564 1.02601 1.03187 1.21783 0.95521 0.96296 0.83250 0.90326 1.22713 1.02756 0.93542 0.95825 1.22852 0.95383 0.96054 0.88672 0.87506 1.60139 1.07691 1.04091 1.57679 1.21718 0.97956 0.88782 0.98716 1.20973 0.88037 0.81967 0.85300 1.90556 1.46367 1.63093 1.49797 1.42027 1.29320 1.06260 1.45651 1.19005 1.08854 0.91320 1.26503 0.92675 1.26119 0.99524 0.97692 0.98068 1.69809 1.34737 1.12016 1.41106 0.85377 0.79243 0.78195 0.78786 1.18032 1.20303 1.15282 1.23387 0.94639 0.89553 0.97156 1.48272 1.49197 1.30354 1.04418 1.16533 0.79986 0.82922 0.80661 1.90802 1.39698 1.28935 1.83218 1.22313 1.02784 0.96398 0.96137 1.23893 0.99143 0.99830 0.87303 1.72212 1.18173 1.12933 1.40528 1.79097 1.34043 1.24854 0.80091 1.72588 1.18218 1.15011 1.35120 0.89570 0.92781 0.92196 0.88007 0.90246 0.83181 0.90241 0.86545 0.77451 0.91198 0.91457 0.88277 0.75747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.05 71.98 0.65 -1.76 16 2 C 0.13 2.27 3.49 45.34 0.16 2.43 16 3 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 4 C -0.11 -1.79 6.19 31.78 0.20 -1.60 16 5 C 0.08 1.48 3.38 46.30 0.16 1.64 16 6 H 0.11 1.70 7.83 -2.39 -0.02 1.68 16 7 N -0.66 -16.96 6.04 -488.41 -2.95 -19.91 16 8 C 0.06 1.63 6.03 85.56 0.52 2.15 16 9 C 0.45 19.11 7.82 87.66 0.69 19.80 16 10 O -0.61 -32.65 15.78 -3.07 -0.05 -32.69 16 11 N -0.59 -26.63 5.09 -306.97 -1.56 -28.19 16 12 C -0.33 -18.73 10.16 84.04 0.85 -17.87 16 13 H 0.06 3.78 7.39 -2.91 -0.02 3.76 16 14 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 15 N -0.94 -55.70 13.96 21.66 0.30 -55.40 16 16 Si 0.96 37.52 27.74 68.60 1.90 39.42 16 17 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 18 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.23 -7.40 6.51 99.48 0.65 -6.75 16 20 C 0.08 1.43 5.68 86.85 0.49 1.92 16 21 N -0.59 -11.40 3.08 -791.55 -2.44 -13.84 16 22 C 0.62 13.30 7.63 86.76 0.66 13.96 16 23 O -0.55 -13.98 15.71 -3.93 -0.06 -14.04 16 24 C 0.00 -0.06 6.71 41.98 0.28 0.22 16 25 C 0.09 1.47 11.22 85.22 0.96 2.42 16 26 N -0.60 -9.67 11.41 -92.46 -1.05 -10.72 16 27 S 0.78 10.04 23.69 -56.49 -1.34 8.70 16 28 N -0.56 -9.66 8.29 -80.58 -0.67 -10.33 16 29 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 1.04 6.76 -2.39 -0.02 1.02 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 1.45 7.83 -2.38 -0.02 1.43 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.35 9.71 7.89 -89.70 -0.71 9.00 16 35 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.12 2.61 8.09 -2.39 -0.02 2.59 16 37 H 0.39 14.35 5.76 -92.71 -0.53 13.81 16 38 H 0.28 15.15 8.31 -92.70 -0.77 14.38 16 39 H 0.07 1.34 7.75 -2.39 -0.02 1.32 16 40 H 0.10 1.81 6.09 -2.38 -0.01 1.79 16 41 H 0.23 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -77.71 356.82 -2.04 -79.74 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.20 Total: 34.32 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.08 Total: 22.93 kcal Atomic # 7 Polarization: -130.01 SS G_CDS: -8.37 Total: -138.38 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.11 Total: -46.74 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 1.90 Total: 39.42 kcal Atomic # 16 Polarization: 10.04 SS G_CDS: -1.34 Total: 8.70 kcal Total: -77.71 -2.04 -79.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725576375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.605 kcal (2) G-P(sol) polarization free energy of solvation -77.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds