Wall clock time and date at job start Tue Mar 31 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48497 * 109.47431 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.47195 * 30.00451 * 3 2 1 6 6 H 1.48499 * 109.46864 * 150.00231 * 3 2 1 7 7 C 1.38798 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99993 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00197 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47472 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99432 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00223 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99957 * 179.97438 * 13 11 10 15 15 C 1.53777 * 113.61622 * 155.00446 * 14 13 11 16 16 C 1.53786 * 87.08367 * 89.11470 * 15 14 13 17 17 C 1.53000 * 113.61252 * 139.98151 * 16 15 14 18 18 N 1.46504 * 109.46805 * 176.53379 * 17 16 15 19 19 C 1.34773 * 119.99708 * 180.02562 * 18 17 16 20 20 O 1.21619 * 120.00297 * 359.97438 * 19 18 17 21 21 C 1.47238 * 119.99771 * 179.97438 * 19 18 17 22 22 C 1.37006 * 127.18822 * 179.97438 * 21 19 18 23 23 N 1.33313 * 106.37337 * 180.02562 * 22 21 19 24 24 N 1.28518 * 109.43864 * 0.02562 * 23 22 21 25 25 N 1.28714 * 110.63588 * 359.97438 * 24 23 22 26 26 H 0.97001 * 126.02884 * 179.97438 * 25 24 23 27 27 C 1.53787 * 87.16957 * 25.39461 * 16 15 14 28 28 H 0.97002 * 119.99365 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47167 * 59.99890 * 10 9 7 30 30 H 1.09000 * 109.47162 * 299.99959 * 10 9 7 31 31 H 0.97001 * 119.99746 * 0.02562 * 13 11 10 32 32 H 1.08997 * 112.85284 * 23.80544 * 14 13 11 33 33 H 1.09005 * 113.61266 * 334.56993 * 15 14 13 34 34 H 1.08997 * 113.61879 * 203.66489 * 15 14 13 35 35 H 1.08990 * 113.61496 * 270.80347 * 16 15 14 36 36 H 1.08999 * 109.47123 * 56.53132 * 17 16 15 37 37 H 1.09006 * 109.47246 * 296.52982 * 17 16 15 38 38 H 0.96996 * 119.99857 * 0.02562 * 18 17 16 39 39 H 1.08004 * 126.81591 * 0.02922 * 22 21 19 40 40 H 1.08991 * 113.61619 * 89.15872 * 27 16 15 41 41 H 1.09000 * 113.60890 * 220.05996 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7723 -1.2022 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5730 -3.2328 -0.0002 12 8 6.3440 -2.2965 -0.0006 13 7 6.0455 -4.4949 0.0001 14 6 7.4905 -4.7360 -0.0006 15 6 7.8883 -6.0967 0.5951 16 6 7.7376 -6.6731 -0.8226 17 6 8.8177 -7.6935 -1.1873 18 7 8.5416 -8.2426 -2.5172 19 6 9.3661 -9.1665 -3.0492 20 8 10.3395 -9.5442 -2.4255 21 6 9.0883 -9.7188 -4.3855 22 6 9.8221 -10.6567 -5.0629 23 7 9.2010 -10.8514 -6.2263 24 7 8.1595 -10.1007 -6.2860 25 7 8.0423 -9.4013 -5.2119 26 1 7.3381 -8.7620 -5.0214 27 6 8.0264 -5.2565 -1.3468 28 1 -0.4849 0.8401 -0.0004 29 1 3.6439 -3.4315 -0.8903 30 1 3.6432 -3.4319 0.8896 31 1 5.4288 -5.2436 0.0000 32 1 8.0595 -3.8991 0.4041 33 1 7.1623 -6.4911 1.3062 34 1 8.9106 -6.1264 0.9721 35 1 6.7305 -7.0246 -1.0463 36 1 8.8180 -8.5000 -0.4541 37 1 9.7924 -7.2054 -1.1910 38 1 7.7655 -7.9411 -3.0148 39 1 10.7247 -11.1421 -4.7220 40 1 9.0865 -5.0559 -1.5018 41 1 7.4118 -4.9735 -2.2013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725861591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:11 Heat of formation + Delta-G solvation = 41.212516 kcal Electronic energy + Delta-G solvation = -25121.103186 eV Core-core repulsion = 21165.193036 eV Total energy + Delta-G solvation = -3955.910149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.94641 -40.70085 -39.89161 -38.37219 -35.50461 -34.12490 -33.22369 -32.50337 -32.03655 -29.73947 -28.19330 -26.18949 -25.68920 -24.94153 -23.64150 -22.83009 -21.68549 -21.08976 -20.18006 -19.32339 -17.98898 -17.42207 -17.01218 -16.85519 -16.53439 -16.27166 -15.82034 -15.27894 -15.15238 -15.03047 -14.88681 -14.67993 -14.30908 -13.93143 -13.50655 -13.25054 -12.96334 -12.85540 -12.79442 -12.58706 -12.06331 -11.88832 -11.55330 -11.37273 -11.33060 -11.17865 -11.06745 -10.84692 -10.74632 -10.59328 -10.19022 -9.92477 -9.80753 -9.66269 -9.14092 -9.05860 -8.58446 -6.99898 -6.35411 -4.07995 0.25521 1.70723 1.79298 2.25603 2.42900 2.64466 2.80463 3.19008 3.27919 3.44752 3.54789 3.67392 3.94338 3.97817 4.12384 4.21099 4.26888 4.36841 4.44940 4.55140 4.64062 4.65080 5.01896 5.03723 5.10308 5.14402 5.26974 5.29246 5.37651 5.45780 5.56047 5.58765 5.64994 5.69900 5.80538 5.90406 5.92893 6.45621 6.59123 7.30142 7.45273 7.65500 7.87486 8.34332 8.35166 9.10606 10.73714 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.001770 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.072355 B =15814.846255 C =16842.534608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.721 5.721 14 C 0.124 3.876 15 C -0.134 4.134 16 C -0.129 4.129 17 C 0.130 3.870 18 N -0.722 5.722 19 C 0.596 3.404 20 O -0.512 6.512 21 C -0.070 4.070 22 C 0.036 3.964 23 N -0.269 5.269 24 N -0.042 5.042 25 N -0.374 5.374 26 H 0.451 0.549 27 C -0.149 4.149 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.399 0.601 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.397 0.603 39 H 0.206 0.794 40 H 0.092 0.908 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.725 -20.608 -4.417 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.374 5.374 14 C 0.018 3.982 15 C -0.173 4.173 16 C -0.147 4.147 17 C 0.007 3.993 18 N -0.374 5.374 19 C 0.379 3.621 20 O -0.385 6.385 21 C -0.204 4.204 22 C -0.124 4.124 23 N -0.134 5.134 24 N -0.024 5.024 25 N -0.101 5.101 26 H 0.298 0.702 27 C -0.188 4.188 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.233 0.767 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.231 0.769 39 H 0.222 0.778 40 H 0.111 0.889 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.061 -19.605 -5.306 27.854 hybrid contribution -1.642 0.107 0.820 1.838 sum 17.419 -19.498 -4.486 26.528 Atomic orbital electron populations 1.69938 1.05913 1.27829 1.47868 1.24718 0.94465 0.98993 0.93133 0.86733 0.81883 0.83273 0.79952 1.19194 1.19878 1.15936 1.22302 0.88202 0.97541 1.59017 0.89385 1.84820 1.09374 0.99806 1.97433 1.23281 0.93821 1.04624 1.05815 1.20326 0.90618 0.82251 0.74871 1.90709 1.58741 1.42147 1.47362 1.45671 1.06336 1.08069 1.77320 1.21741 0.82391 0.97922 0.96172 1.23294 1.03284 0.95298 0.95411 1.22918 0.99069 0.94534 0.98228 1.21536 0.98930 0.96500 0.82304 1.45894 1.28861 1.42296 1.20308 1.16737 0.83178 0.79311 0.82890 1.90898 1.27625 1.59620 1.60339 1.22384 0.94827 1.06622 0.96594 1.23973 1.01413 0.96683 0.90322 1.75051 1.02171 1.17366 1.18791 1.78287 1.15159 1.03320 1.05634 1.45635 1.21055 1.31071 1.12363 0.70175 1.23596 1.02237 0.94362 0.98608 0.91886 0.88528 0.88394 0.76670 0.87661 0.90203 0.88268 0.88432 0.90544 0.90382 0.76904 0.77761 0.88906 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.97 55.49 0.78 -25.17 16 2 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 3 Si 0.86 21.25 27.74 -169.99 -4.72 16.54 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 7 C -0.52 -14.60 10.04 30.94 0.31 -14.29 16 8 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 9 S -0.14 -3.41 18.55 -107.50 -1.99 -5.41 16 10 C -0.12 -2.21 6.16 36.01 0.22 -1.99 16 11 C 0.53 8.44 7.85 -10.99 -0.09 8.35 16 12 O -0.52 -10.28 15.46 5.55 0.09 -10.20 16 13 N -0.72 -7.35 5.26 -52.93 -0.28 -7.63 16 14 C 0.12 1.04 4.33 -67.03 -0.29 0.75 16 15 C -0.13 -0.68 7.39 -25.92 -0.19 -0.87 16 16 C -0.13 -0.52 3.62 -89.80 -0.33 -0.84 16 17 C 0.13 0.57 5.50 -4.04 -0.02 0.55 16 18 N -0.72 -2.88 5.55 -61.44 -0.34 -3.22 16 19 C 0.60 3.94 7.81 -12.61 -0.10 3.84 16 20 O -0.51 -5.17 16.92 5.26 0.09 -5.09 16 21 C -0.07 -0.43 7.17 -82.33 -0.59 -1.02 16 22 C 0.04 0.26 11.87 -17.36 -0.21 0.05 16 23 N -0.27 -2.46 12.35 30.47 0.38 -2.08 16 24 N -0.04 -0.34 13.35 60.35 0.81 0.47 16 25 N -0.37 -1.76 6.97 33.31 0.23 -1.53 16 26 H 0.45 0.38 8.32 -190.33 -1.58 -1.21 16 27 C -0.15 -0.93 7.44 -25.82 -0.19 -1.12 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 30 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.40 2.91 8.70 -40.82 -0.36 2.56 16 32 H 0.11 1.13 7.46 -51.93 -0.39 0.75 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.42 8.10 -51.93 -0.42 0.00 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.41 7.88 -51.93 -0.41 0.00 16 38 H 0.40 0.57 7.74 -40.82 -0.32 0.25 16 39 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.09 0.55 7.92 -51.93 -0.41 0.14 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -37.44 371.10 -7.36 -44.80 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.42 Total: -3.13 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.57 Total: -3.94 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 1.57 Total: -39.16 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.17 Total: -15.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.72 Total: 16.54 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.44 -7.36 -44.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725861591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.011 kcal (2) G-P(sol) polarization free energy of solvation -37.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds