Wall clock time and date at job start Tue Mar 31 2020 22:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48497 * 109.47431 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.47195 * 30.00451 * 3 2 1 6 6 H 1.48499 * 109.46864 * 150.00231 * 3 2 1 7 7 C 1.38798 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99993 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00197 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47472 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99432 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00223 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99957 * 179.97438 * 13 11 10 15 15 C 1.53777 * 113.61622 * 155.00446 * 14 13 11 16 16 C 1.53786 * 87.08367 * 89.11470 * 15 14 13 17 17 C 1.53000 * 113.61252 * 139.98151 * 16 15 14 18 18 N 1.46504 * 109.46805 * 176.53379 * 17 16 15 19 19 C 1.34773 * 119.99708 * 180.02562 * 18 17 16 20 20 O 1.21619 * 120.00297 * 359.97438 * 19 18 17 21 21 C 1.47238 * 119.99771 * 179.97438 * 19 18 17 22 22 C 1.37006 * 127.18822 * 179.97438 * 21 19 18 23 23 N 1.33313 * 106.37337 * 180.02562 * 22 21 19 24 24 N 1.28518 * 109.43864 * 0.02562 * 23 22 21 25 25 N 1.28714 * 110.63588 * 359.97438 * 24 23 22 26 26 H 0.97001 * 126.02884 * 179.97438 * 25 24 23 27 27 C 1.53787 * 87.16957 * 25.39461 * 16 15 14 28 28 H 0.97002 * 119.99365 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47167 * 59.99890 * 10 9 7 30 30 H 1.09000 * 109.47162 * 299.99959 * 10 9 7 31 31 H 0.97001 * 119.99746 * 0.02562 * 13 11 10 32 32 H 1.08997 * 112.85284 * 23.80544 * 14 13 11 33 33 H 1.09005 * 113.61266 * 334.56993 * 15 14 13 34 34 H 1.08997 * 113.61879 * 203.66489 * 15 14 13 35 35 H 1.08990 * 113.61496 * 270.80347 * 16 15 14 36 36 H 1.08999 * 109.47123 * 56.53132 * 17 16 15 37 37 H 1.09006 * 109.47246 * 296.52982 * 17 16 15 38 38 H 0.96996 * 119.99857 * 0.02562 * 18 17 16 39 39 H 1.08004 * 126.81591 * 0.02922 * 22 21 19 40 40 H 1.08991 * 113.61619 * 89.15872 * 27 16 15 41 41 H 1.09000 * 113.60890 * 220.05996 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7723 -1.2022 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5730 -3.2328 -0.0002 12 8 6.3440 -2.2965 -0.0006 13 7 6.0455 -4.4949 0.0001 14 6 7.4905 -4.7360 -0.0006 15 6 7.8883 -6.0967 0.5951 16 6 7.7376 -6.6731 -0.8226 17 6 8.8177 -7.6935 -1.1873 18 7 8.5416 -8.2426 -2.5172 19 6 9.3661 -9.1665 -3.0492 20 8 10.3395 -9.5442 -2.4255 21 6 9.0883 -9.7188 -4.3855 22 6 9.8221 -10.6567 -5.0629 23 7 9.2010 -10.8514 -6.2263 24 7 8.1595 -10.1007 -6.2860 25 7 8.0423 -9.4013 -5.2119 26 1 7.3381 -8.7620 -5.0214 27 6 8.0264 -5.2565 -1.3468 28 1 -0.4849 0.8401 -0.0004 29 1 3.6439 -3.4315 -0.8903 30 1 3.6432 -3.4319 0.8896 31 1 5.4288 -5.2436 0.0000 32 1 8.0595 -3.8991 0.4041 33 1 7.1623 -6.4911 1.3062 34 1 8.9106 -6.1264 0.9721 35 1 6.7305 -7.0246 -1.0463 36 1 8.8180 -8.5000 -0.4541 37 1 9.7924 -7.2054 -1.1910 38 1 7.7655 -7.9411 -3.0148 39 1 10.7247 -11.1421 -4.7220 40 1 9.0865 -5.0559 -1.5018 41 1 7.4118 -4.9735 -2.2013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725861591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:10 Heat of formation + Delta-G solvation = 10.299674 kcal Electronic energy + Delta-G solvation = -25122.443667 eV Core-core repulsion = 21165.193036 eV Total energy + Delta-G solvation = -3957.250631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.46373 -41.38636 -40.60733 -39.31618 -36.07601 -34.73635 -34.66695 -34.11880 -32.58194 -30.92505 -28.87343 -27.84553 -26.66167 -25.48853 -24.19868 -23.37488 -22.27169 -22.05257 -20.75970 -19.94526 -19.83950 -18.13004 -17.71836 -17.51822 -17.27994 -17.20116 -16.99045 -16.51282 -16.33779 -15.93604 -15.51688 -15.44259 -15.29367 -14.94760 -14.79139 -14.62408 -13.94963 -13.69575 -13.37060 -13.35095 -13.32908 -13.03480 -12.89281 -12.66759 -12.43425 -11.98617 -11.88908 -11.85535 -11.77254 -11.36340 -11.20943 -11.17394 -10.99688 -10.73466 -10.52932 -10.23486 -10.04465 -8.99503 -8.51896 -6.22416 -0.24348 0.99543 1.14699 1.30964 1.38848 1.46615 1.55696 1.56049 1.85411 1.92144 2.21261 2.25688 2.71887 2.86590 3.23410 3.49068 3.49759 3.67586 3.76892 3.84710 3.89541 3.93435 4.05654 4.25178 4.28869 4.47678 4.58162 4.68409 4.83250 4.86806 4.89834 4.91672 5.02182 5.12028 5.20113 5.29574 5.61953 5.65094 5.70397 6.11334 6.22241 6.49301 6.86567 6.93655 7.12165 7.22494 8.60255 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.001770 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.072355 B =15814.846255 C =16842.534608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.693 5.693 14 C 0.104 3.896 15 C -0.121 4.121 16 C -0.108 4.108 17 C 0.131 3.869 18 N -0.706 5.706 19 C 0.601 3.399 20 O -0.549 6.549 21 C -0.063 4.063 22 C 0.025 3.975 23 N -0.299 5.299 24 N -0.062 5.062 25 N -0.349 5.349 26 H 0.468 0.532 27 C -0.145 4.145 28 H 0.276 0.724 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.417 0.583 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.218 0.782 40 H 0.096 0.904 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.480 -21.670 -4.206 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.262 4.262 11 C 0.323 3.677 12 O -0.442 6.442 13 N -0.346 5.346 14 C -0.001 4.001 15 C -0.159 4.159 16 C -0.126 4.126 17 C 0.009 3.991 18 N -0.358 5.358 19 C 0.384 3.616 20 O -0.425 6.425 21 C -0.199 4.199 22 C -0.135 4.135 23 N -0.163 5.163 24 N -0.044 5.044 25 N -0.080 5.080 26 H 0.319 0.681 27 C -0.184 4.184 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.255 0.745 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.235 0.765 40 H 0.115 0.885 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.763 -20.703 -5.110 29.074 hybrid contribution -1.849 0.307 0.787 2.032 sum 17.914 -20.395 -4.323 27.488 Atomic orbital electron populations 1.70017 1.07278 1.28979 1.49167 1.25558 0.95262 1.02234 0.92978 0.85877 0.80682 0.79709 0.80173 1.18741 1.18509 1.16076 1.22462 0.90275 0.96663 1.58140 0.91815 1.84764 1.06388 1.06491 1.97591 1.23275 0.95972 0.99424 1.07552 1.19951 0.89255 0.83530 0.74957 1.90700 1.59318 1.43971 1.50165 1.45383 1.07776 1.06570 1.74871 1.21994 0.80600 0.98889 0.98660 1.23261 1.04134 0.92407 0.96143 1.22803 0.99863 0.93015 0.96946 1.21514 0.98794 0.96508 0.82304 1.45777 1.28697 1.41105 1.20224 1.16703 0.82880 0.79356 0.82652 1.90889 1.29301 1.61056 1.61222 1.22281 0.94864 1.06273 0.96441 1.24306 1.02026 0.97117 0.90019 1.75026 1.02938 1.18412 1.19956 1.78222 1.15344 1.04088 1.06714 1.45589 1.20860 1.30348 1.11193 0.68128 1.23569 1.02267 0.95544 0.96978 0.91413 0.86650 0.86795 0.74493 0.90348 0.89188 0.87171 0.86539 0.90325 0.90911 0.75156 0.76526 0.88518 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 13.97 21.65 0.30 -54.30 16 2 C 0.05 2.58 5.50 84.86 0.47 3.05 16 3 Si 0.91 43.96 27.74 68.60 1.90 45.86 16 4 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.24 -11.37 6.74 99.48 0.67 -10.70 16 7 C -0.53 -29.69 10.04 67.95 0.68 -29.01 16 8 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 9 S -0.18 -8.63 18.55 -56.49 -1.05 -9.68 16 10 C -0.11 -3.78 6.16 71.24 0.44 -3.34 16 11 C 0.54 16.17 7.85 87.66 0.69 16.86 16 12 O -0.56 -22.24 15.46 -3.04 -0.05 -22.29 16 13 N -0.69 -12.29 5.26 -439.76 -2.31 -14.60 16 14 C 0.10 1.52 4.33 45.58 0.20 1.72 16 15 C -0.12 -0.81 7.39 31.12 0.23 -0.58 16 16 C -0.11 -0.45 3.62 -10.26 -0.04 -0.49 16 17 C 0.13 0.73 5.50 86.38 0.47 1.21 16 18 N -0.71 -3.47 5.55 -466.55 -2.59 -6.06 16 19 C 0.60 6.71 7.81 86.61 0.68 7.39 16 20 O -0.55 -10.33 16.92 -4.09 -0.07 -10.40 16 21 C -0.06 -0.67 7.17 40.41 0.29 -0.38 16 22 C 0.03 0.35 11.87 84.18 1.00 1.35 16 23 N -0.30 -5.32 12.35 -57.50 -0.71 -6.03 16 24 N -0.06 -0.93 13.35 37.02 0.49 -0.44 16 25 N -0.35 -2.63 6.97 -48.52 -0.34 -2.97 16 26 H 0.47 -0.45 8.32 -219.90 -1.83 -2.28 16 27 C -0.14 -1.41 7.44 31.18 0.23 -1.18 16 28 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.12 3.50 8.14 -2.40 -0.02 3.48 16 30 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 31 H 0.42 4.48 8.70 -92.71 -0.81 3.67 16 32 H 0.08 1.63 7.46 -2.39 -0.02 1.62 16 33 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.11 0.58 8.10 -2.39 -0.02 0.56 16 35 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.07 0.56 7.88 -2.38 -0.02 0.54 16 38 H 0.41 -0.36 7.74 -92.71 -0.72 -1.08 16 39 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.10 0.91 7.92 -2.39 -0.02 0.89 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -83.34 371.10 -1.36 -84.69 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -2.28 Total: -0.38 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.34 Total: -3.40 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -5.16 Total: -84.40 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.12 Total: -32.69 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.86 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.05 Total: -9.68 kcal Total: -83.34 -1.36 -84.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725861591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.994 kcal (2) G-P(sol) polarization free energy of solvation -83.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds