Wall clock time and date at job start Tue Mar 31 2020 22:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86791 * 119.99852 * 2 1 4 4 H 1.48504 * 109.47369 * 269.99811 * 3 2 1 5 5 H 1.48501 * 109.47398 * 29.99850 * 3 2 1 6 6 H 1.48500 * 109.47120 * 149.99938 * 3 2 1 7 7 C 1.38949 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00262 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99641 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99833 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00478 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99918 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47009 * 186.26948 * 12 10 9 14 14 C 1.46848 * 110.99591 * 190.60195 * 13 12 10 15 15 C 1.53037 * 109.51927 * 174.15516 * 14 13 12 16 16 C 1.53112 * 109.27859 * 59.18013 * 15 14 13 17 17 C 1.53122 * 109.16125 * 302.34457 * 16 15 14 18 18 H 1.09006 * 109.53094 * 297.68962 * 17 16 15 19 19 N 1.46500 * 109.50324 * 177.59481 * 17 16 15 20 20 C 1.34783 * 120.00187 * 84.92037 * 19 17 16 21 21 O 1.21607 * 119.99723 * 0.27455 * 20 19 17 22 22 C 1.47441 * 120.00304 * 180.27442 * 20 19 17 23 23 C 1.37983 * 124.15408 * 180.02562 * 22 20 19 24 24 S 1.72105 * 104.03042 * 179.97438 * 23 22 20 25 25 N 1.56408 * 96.15714 * 0.02562 * 24 23 22 26 26 N 1.27418 * 109.86983 * 359.72310 * 25 24 23 27 27 C 1.46844 * 111.00259 * 66.38736 * 13 12 10 28 28 H 0.96994 * 120.00387 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99831 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47022 * 66.26494 * 12 10 9 31 31 H 1.09001 * 109.46776 * 306.26608 * 12 10 9 32 32 H 1.08999 * 109.46000 * 294.17068 * 14 13 12 33 33 H 1.08999 * 109.46258 * 54.14619 * 14 13 12 34 34 H 1.09007 * 109.49938 * 179.11518 * 15 14 13 35 35 H 1.08996 * 109.50676 * 299.19488 * 15 14 13 36 36 H 1.09007 * 109.52660 * 182.43588 * 16 15 14 37 37 H 1.09005 * 109.52456 * 62.25070 * 16 15 14 38 38 H 0.96996 * 120.00002 * 265.18984 * 19 17 16 39 39 H 1.07993 * 127.98721 * 0.03400 * 23 22 20 40 40 H 1.09003 * 109.46081 * 65.82559 * 27 13 12 41 41 H 1.08990 * 109.45388 * 305.85176 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0011 12 6 5.5608 -2.3705 0.0011 13 7 6.0505 -3.7472 -0.1502 14 6 7.4964 -3.8214 0.0954 15 6 7.9445 -5.2845 0.0731 16 6 7.6074 -5.8957 -1.2896 17 6 6.1030 -5.7621 -1.5421 18 1 5.5551 -6.3212 -0.7835 19 7 5.7807 -6.2929 -2.8689 20 6 5.5609 -7.6127 -3.0317 21 8 5.6253 -8.3622 -2.0761 22 6 5.2425 -8.1479 -4.3681 23 6 5.0021 -9.4808 -4.6318 24 16 4.6903 -9.5218 -6.3238 25 7 4.8694 -7.9868 -6.5647 26 7 5.1465 -7.4053 -5.4653 27 6 5.7082 -4.2852 -1.4730 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3633 0.0007 30 1 5.9241 -1.9568 0.9418 31 1 5.9241 -1.7625 -0.8275 32 1 8.0254 -3.2676 -0.6802 33 1 7.7221 -3.3873 1.0695 34 1 9.0204 -5.3381 0.2399 35 1 7.4267 -5.8357 0.8580 36 1 7.8855 -6.9497 -1.2951 37 1 8.1560 -5.3693 -2.0707 38 1 5.7293 -5.6952 -3.6311 39 1 5.0073 -10.3073 -3.9367 40 1 6.2456 -3.7293 -2.2413 41 1 4.6353 -4.1880 -1.6378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732091667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:29 Heat of formation + Delta-G solvation = 15.045852 kcal Electronic energy + Delta-G solvation = -26692.258352 eV Core-core repulsion = 22735.213532 eV Total energy + Delta-G solvation = -3957.044821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39480 -39.93717 -38.89434 -37.66680 -34.91175 -33.96373 -32.80074 -32.34247 -31.64622 -29.81720 -27.69037 -27.34692 -24.66752 -24.42243 -22.90823 -22.21633 -21.03529 -20.13089 -19.40281 -19.22935 -18.26593 -17.20233 -16.34468 -16.28860 -16.11002 -15.81005 -15.27056 -14.96568 -14.88516 -14.82501 -14.27789 -14.02890 -13.74125 -13.46180 -13.29365 -13.01352 -12.94762 -12.62811 -12.43826 -12.32127 -11.90851 -11.65891 -11.38108 -11.19034 -10.95159 -10.76999 -10.73886 -10.60033 -10.58999 -10.42907 -10.30965 -10.27484 -9.96991 -9.53905 -9.17521 -8.57371 -8.17591 -8.00953 -6.30434 -3.81833 -0.29536 0.55308 1.14439 1.17380 2.82770 2.93804 3.02647 3.06671 3.15210 3.49980 3.74193 3.94062 4.10681 4.34265 4.56321 4.70825 4.82324 4.85975 4.95377 5.02067 5.13337 5.22561 5.33185 5.52345 5.54417 5.62208 5.66631 5.72605 5.88441 5.93788 6.01072 6.04955 6.16894 6.32426 6.35711 7.04777 7.10519 7.25649 7.37104 7.59135 7.92312 8.15179 8.60936 8.96107 9.43130 9.84139 10.82754 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.002670 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.589645 B =10483.317838 C =12150.747256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.556 6.556 12 C 0.045 3.955 13 N -0.511 5.511 14 C 0.052 3.948 15 C -0.112 4.112 16 C -0.130 4.130 17 C 0.150 3.850 18 H 0.105 0.895 19 N -0.701 5.701 20 C 0.607 3.393 21 O -0.522 6.522 22 C -0.020 4.020 23 C -0.235 4.235 24 S 0.459 5.541 25 N -0.288 5.288 26 N -0.210 5.210 27 C 0.049 3.951 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.409 0.591 39 H 0.209 0.791 40 H 0.030 0.970 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.407 -14.964 -9.989 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.438 6.438 12 C -0.086 4.086 13 N -0.235 5.235 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.169 4.169 17 C 0.046 3.954 18 H 0.123 0.877 19 N -0.351 5.351 20 C 0.387 3.613 21 O -0.397 6.397 22 C -0.168 4.168 23 C -0.392 4.392 24 S 0.595 5.405 25 N -0.269 5.269 26 N -0.080 5.080 27 C -0.079 4.079 28 H 0.084 0.916 29 H 0.202 0.798 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.244 0.756 39 H 0.226 0.774 40 H 0.048 0.952 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.316 -15.928 -10.773 25.219 hybrid contribution 1.158 2.233 0.584 2.582 sum 17.475 -13.695 -10.189 24.428 Atomic orbital electron populations 1.69622 1.05643 1.27474 1.49445 1.25038 0.95483 0.97960 0.97700 0.86677 0.79805 0.84096 0.78836 1.19687 1.20196 1.19471 1.19424 0.79214 0.96609 1.47988 0.86279 1.42227 1.07534 1.06140 1.67236 1.19664 0.88084 0.84578 0.84099 1.90562 1.69291 1.30755 1.53172 1.21892 0.95622 0.89127 1.01980 1.61327 1.12856 1.19860 1.29483 1.22184 0.87559 0.96881 1.00961 1.21512 1.00563 0.95487 0.97433 1.21990 0.95617 1.01530 0.97725 1.21051 0.95545 0.95067 0.83726 0.87736 1.45810 1.69649 1.07431 1.12226 1.16578 0.77212 0.82756 0.84716 1.90852 1.51773 1.57895 1.39194 1.22724 1.07535 0.90648 0.95846 1.28898 1.04460 1.01461 1.04424 1.81551 1.48250 1.12273 0.98448 1.78671 1.21571 1.05883 1.20749 1.71531 1.12423 1.30297 0.93767 1.22349 1.03811 0.92630 0.89132 0.91630 0.79756 0.88801 0.93369 0.95043 0.90412 0.91209 0.90493 0.91310 0.92098 0.75568 0.77352 0.95150 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 2 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 3 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 8 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 9 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 10 C 0.45 10.07 7.31 -10.98 -0.08 9.98 16 11 O -0.56 -14.70 14.29 5.55 0.08 -14.62 16 12 C 0.05 0.74 5.45 -4.97 -0.03 0.71 16 13 N -0.51 -7.91 4.35 -236.12 -1.03 -8.93 16 14 C 0.05 0.61 5.46 -3.83 -0.02 0.58 16 15 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 16 C -0.13 -1.48 5.58 -26.61 -0.15 -1.63 16 17 C 0.15 2.08 2.62 -67.85 -0.18 1.90 16 18 H 0.10 1.74 7.58 -51.93 -0.39 1.35 16 19 N -0.70 -9.01 5.08 -54.79 -0.28 -9.29 16 20 C 0.61 8.20 7.78 -12.51 -0.10 8.10 16 21 O -0.52 -8.28 16.46 5.27 0.09 -8.19 16 22 C -0.02 -0.23 6.87 -83.78 -0.58 -0.81 16 23 C -0.24 -1.92 11.21 30.64 0.34 -1.58 16 24 S 0.46 2.98 23.38 -107.50 -2.51 0.47 16 25 N -0.29 -3.08 12.49 60.35 0.75 -2.32 16 26 N -0.21 -2.52 11.24 32.73 0.37 -2.15 16 27 C 0.05 0.75 4.59 -3.84 -0.02 0.73 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 30 H 0.09 1.34 7.98 -51.93 -0.41 0.92 16 31 H 0.05 0.69 8.12 -51.93 -0.42 0.26 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.41 4.75 8.19 -40.82 -0.33 4.42 16 39 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 2.00 6.06 -51.93 -0.31 1.68 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -34.97 357.70 -7.39 -42.37 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.04 Total: 12.77 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.21 Total: 8.97 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.54 Total: -61.76 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.17 Total: -22.81 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.51 Total: 0.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.97 -7.39 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732091667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.412 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds