Wall clock time and date at job start Tue Mar 31 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86791 * 119.99852 * 2 1 4 4 H 1.48504 * 109.47369 * 269.99811 * 3 2 1 5 5 H 1.48501 * 109.47398 * 29.99850 * 3 2 1 6 6 H 1.48500 * 109.47120 * 149.99938 * 3 2 1 7 7 C 1.38949 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00262 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99641 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99833 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00478 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99918 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47009 * 186.26948 * 12 10 9 14 14 C 1.46848 * 110.99591 * 190.60195 * 13 12 10 15 15 C 1.53037 * 109.51927 * 174.15516 * 14 13 12 16 16 C 1.53112 * 109.27859 * 59.18013 * 15 14 13 17 17 C 1.53122 * 109.16125 * 302.34457 * 16 15 14 18 18 H 1.09006 * 109.53094 * 297.68962 * 17 16 15 19 19 N 1.46500 * 109.50324 * 177.59481 * 17 16 15 20 20 C 1.34783 * 120.00187 * 84.92037 * 19 17 16 21 21 O 1.21607 * 119.99723 * 0.27455 * 20 19 17 22 22 C 1.47441 * 120.00304 * 180.27442 * 20 19 17 23 23 C 1.37983 * 124.15408 * 180.02562 * 22 20 19 24 24 S 1.72105 * 104.03042 * 179.97438 * 23 22 20 25 25 N 1.56408 * 96.15714 * 0.02562 * 24 23 22 26 26 N 1.27418 * 109.86983 * 359.72310 * 25 24 23 27 27 C 1.46844 * 111.00259 * 66.38736 * 13 12 10 28 28 H 0.96994 * 120.00387 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99831 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47022 * 66.26494 * 12 10 9 31 31 H 1.09001 * 109.46776 * 306.26608 * 12 10 9 32 32 H 1.08999 * 109.46000 * 294.17068 * 14 13 12 33 33 H 1.08999 * 109.46258 * 54.14619 * 14 13 12 34 34 H 1.09007 * 109.49938 * 179.11518 * 15 14 13 35 35 H 1.08996 * 109.50676 * 299.19488 * 15 14 13 36 36 H 1.09007 * 109.52660 * 182.43588 * 16 15 14 37 37 H 1.09005 * 109.52456 * 62.25070 * 16 15 14 38 38 H 0.96996 * 120.00002 * 265.18984 * 19 17 16 39 39 H 1.07993 * 127.98721 * 0.03400 * 23 22 20 40 40 H 1.09003 * 109.46081 * 65.82559 * 27 13 12 41 41 H 1.08990 * 109.45388 * 305.85176 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0011 12 6 5.5608 -2.3705 0.0011 13 7 6.0505 -3.7472 -0.1502 14 6 7.4964 -3.8214 0.0954 15 6 7.9445 -5.2845 0.0731 16 6 7.6074 -5.8957 -1.2896 17 6 6.1030 -5.7621 -1.5421 18 1 5.5551 -6.3212 -0.7835 19 7 5.7807 -6.2929 -2.8689 20 6 5.5609 -7.6127 -3.0317 21 8 5.6253 -8.3622 -2.0761 22 6 5.2425 -8.1479 -4.3681 23 6 5.0021 -9.4808 -4.6318 24 16 4.6903 -9.5218 -6.3238 25 7 4.8694 -7.9868 -6.5647 26 7 5.1465 -7.4053 -5.4653 27 6 5.7082 -4.2852 -1.4730 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3633 0.0007 30 1 5.9241 -1.9568 0.9418 31 1 5.9241 -1.7625 -0.8275 32 1 8.0254 -3.2676 -0.6802 33 1 7.7221 -3.3873 1.0695 34 1 9.0204 -5.3381 0.2399 35 1 7.4267 -5.8357 0.8580 36 1 7.8855 -6.9497 -1.2951 37 1 8.1560 -5.3693 -2.0707 38 1 5.7293 -5.6952 -3.6311 39 1 5.0073 -10.3073 -3.9367 40 1 6.2456 -3.7293 -2.2413 41 1 4.6353 -4.1880 -1.6378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732091667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:28 Heat of formation + Delta-G solvation = -15.304308 kcal Electronic energy + Delta-G solvation = -26693.574434 eV Core-core repulsion = 22735.213532 eV Total energy + Delta-G solvation = -3958.360903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.22718 -41.05774 -40.30932 -39.07987 -36.18243 -35.81280 -33.90184 -33.67574 -33.18344 -30.84032 -29.12820 -28.12799 -26.39469 -25.40919 -24.15647 -23.20104 -21.91174 -21.25111 -21.11259 -20.31699 -20.07056 -18.09170 -17.70884 -17.34885 -17.16015 -16.85791 -16.71977 -16.33919 -16.12118 -15.82134 -15.45918 -15.43682 -15.08292 -14.81213 -14.64808 -14.43587 -14.11595 -13.84937 -13.71207 -13.33511 -13.13643 -13.04271 -12.75267 -12.41156 -12.39885 -11.98911 -11.96754 -11.79596 -11.71006 -11.45524 -11.43382 -11.28168 -11.21096 -10.94200 -10.40307 -10.25238 -10.17326 -9.20853 -8.40667 -6.01412 -0.97972 -0.09024 0.25654 0.49659 1.30276 1.35932 1.44887 1.83892 1.96115 1.97985 2.23634 2.61282 2.72878 3.15788 3.24789 3.57106 3.66605 3.81562 3.85699 4.05105 4.11242 4.23437 4.25392 4.32768 4.39929 4.52492 4.64132 4.66981 4.73274 4.91813 4.99101 5.06252 5.18828 5.22889 5.41543 5.54203 5.89944 6.00973 6.14367 6.21886 6.48239 6.61227 6.89966 6.90082 7.41546 7.99886 8.77320 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.002670 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.589645 B =10483.317838 C =12150.747256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.326 4.326 8 H 0.052 0.948 9 N -0.593 5.593 10 C 0.449 3.551 11 O -0.606 6.606 12 C 0.057 3.943 13 N -0.538 5.538 14 C 0.053 3.947 15 C -0.108 4.108 16 C -0.120 4.120 17 C 0.156 3.844 18 H 0.065 0.935 19 N -0.699 5.699 20 C 0.604 3.396 21 O -0.555 6.555 22 C -0.046 4.046 23 C -0.237 4.237 24 S 0.570 5.430 25 N -0.332 5.332 26 N -0.235 5.235 27 C 0.057 3.943 28 H 0.278 0.722 29 H 0.390 0.610 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.414 0.586 39 H 0.230 0.770 40 H 0.055 0.945 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.260 -13.868 -10.851 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.215 4.215 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.455 4.455 8 H 0.070 0.930 9 N -0.235 5.235 10 C 0.236 3.764 11 O -0.490 6.490 12 C -0.074 4.074 13 N -0.263 5.263 14 C -0.074 4.074 15 C -0.147 4.147 16 C -0.158 4.158 17 C 0.051 3.949 18 H 0.083 0.917 19 N -0.349 5.349 20 C 0.387 3.613 21 O -0.432 6.432 22 C -0.194 4.194 23 C -0.393 4.393 24 S 0.705 5.295 25 N -0.313 5.313 26 N -0.105 5.105 27 C -0.072 4.072 28 H 0.088 0.912 29 H 0.225 0.775 30 H 0.144 0.856 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.251 0.749 39 H 0.246 0.754 40 H 0.073 0.927 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.210 -14.824 -11.647 27.638 hybrid contribution -0.157 1.604 0.773 1.787 sum 20.053 -13.221 -10.874 26.366 Atomic orbital electron populations 1.69814 1.08224 1.29210 1.50568 1.26138 0.96467 1.02795 0.96140 0.85353 0.79585 0.76598 0.79906 1.18206 1.20138 1.15156 1.18974 0.81577 0.94781 1.50177 0.92965 1.42043 1.05727 1.07620 1.68104 1.20999 0.91015 0.83265 0.81075 1.90552 1.71328 1.32705 1.54441 1.21836 0.90024 0.90523 1.04975 1.61258 1.15895 1.19561 1.29606 1.22310 0.84773 0.97647 1.02625 1.21538 1.02260 0.94778 0.96085 1.21918 0.93259 1.01650 0.99012 1.20897 0.97120 0.93688 0.83206 0.91681 1.45809 1.69397 1.07596 1.12068 1.16874 0.76464 0.82587 0.85406 1.90818 1.53376 1.58551 1.40480 1.22502 1.09912 0.91984 0.95035 1.29298 1.02716 1.00856 1.06476 1.81129 1.44515 1.08303 0.95544 1.78302 1.23020 1.09092 1.20900 1.71564 1.13543 1.31355 0.93995 1.22151 1.01092 0.93786 0.90162 0.91207 0.77485 0.85596 0.89988 0.92714 0.88696 0.87975 0.92336 0.91867 0.90153 0.74900 0.75372 0.92742 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.31 13.96 21.66 0.30 -57.01 16 2 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 3 Si 0.97 38.93 27.74 68.60 1.90 40.83 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 7 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 8 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 9 N -0.59 -28.01 5.09 -306.98 -1.56 -29.57 16 10 C 0.45 20.31 7.31 87.66 0.64 20.95 16 11 O -0.61 -34.09 14.29 -3.06 -0.04 -34.13 16 12 C 0.06 1.72 5.45 85.56 0.47 2.18 16 13 N -0.54 -15.89 4.35 -900.93 -3.92 -19.81 16 14 C 0.05 1.04 5.46 86.33 0.47 1.51 16 15 C -0.11 -2.04 6.09 30.64 0.19 -1.86 16 16 C -0.12 -2.57 5.58 30.67 0.17 -2.40 16 17 C 0.16 4.45 2.62 45.04 0.12 4.56 16 18 H 0.06 2.36 7.58 -2.38 -0.02 2.35 16 19 N -0.70 -18.84 5.08 -445.52 -2.26 -21.10 16 20 C 0.60 17.16 7.78 86.67 0.67 17.84 16 21 O -0.55 -18.54 16.46 -4.05 -0.07 -18.61 16 22 C -0.05 -1.08 6.87 41.36 0.28 -0.80 16 23 C -0.24 -3.62 11.21 67.76 0.76 -2.86 16 24 S 0.57 6.25 23.38 -56.49 -1.32 4.93 16 25 N -0.33 -6.86 12.49 37.02 0.46 -6.40 16 26 N -0.24 -5.72 11.24 -50.35 -0.57 -6.28 16 27 C 0.06 1.74 4.59 86.32 0.40 2.13 16 28 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.39 15.09 5.76 -92.71 -0.53 14.56 16 30 H 0.13 3.03 7.98 -2.39 -0.02 3.01 16 31 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.58 8.01 -2.39 -0.02 1.56 16 34 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.41 10.08 8.19 -92.71 -0.76 9.32 16 39 H 0.23 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 2.29 6.06 -2.39 -0.01 2.27 16 Total: -1.00 -86.01 357.70 -1.83 -87.84 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.25 Total: 36.99 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 5.49 Total: 22.32 kcal Atomic # 7 Polarization: -132.63 SS G_CDS: -7.54 Total: -140.17 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.11 Total: -52.74 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.83 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.32 Total: 4.93 kcal Total: -86.01 -1.83 -87.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732091667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.538 kcal (2) G-P(sol) polarization free energy of solvation -86.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds