Wall clock time and date at job start Tue Mar 31 2020 22:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50701 * 109.47337 * 2 1 4 4 N 1.31240 * 124.06106 * 270.18542 * 3 2 1 5 5 N 1.27334 * 120.04361 * 180.36661 * 4 3 2 6 6 S 1.56639 * 109.73568 * 359.69292 * 5 4 3 7 7 C 1.38248 * 124.05480 * 89.99895 * 3 2 1 8 8 C 1.47174 * 128.47612 * 359.97438 * 7 3 2 9 9 O 1.21620 * 119.99989 * 359.69868 * 8 7 3 10 10 N 1.34777 * 120.00074 * 179.70503 * 8 7 3 11 11 C 1.46502 * 119.99942 * 180.02562 * 10 8 7 12 12 C 1.53513 * 114.16704 * 204.99849 * 11 10 8 13 13 N 1.47484 * 87.93060 * 220.32609 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46847 * 89.99945 * 22 20 18 24 24 H 1.48493 * 109.47164 * 210.00376 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00260 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.09006 * 109.47484 * 300.00338 * 1 2 3 28 28 H 1.09000 * 109.47140 * 59.99869 * 1 2 3 29 29 H 1.09000 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47603 * 239.99955 * 2 1 3 31 31 H 1.09000 * 109.47140 * 120.00131 * 2 1 3 32 32 H 0.96992 * 120.00120 * 359.97438 * 10 8 7 33 33 H 1.09003 * 113.37948 * 338.07305 * 11 10 8 34 34 H 1.09005 * 113.47855 * 105.56484 * 12 11 10 35 35 H 1.08997 * 113.47719 * 335.09509 * 12 11 10 36 36 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 37 37 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 38 38 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 39 39 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 40 40 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 41 41 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2740 2.1150 -1.0872 5 7 2.7044 3.3101 -0.9981 6 16 2.8502 3.7086 0.5097 7 6 2.2904 2.1507 1.1454 8 6 2.1426 1.7343 2.5493 9 8 1.7411 0.6171 2.8131 10 7 2.4520 2.5912 3.5424 11 6 2.3054 2.1766 4.9399 12 6 2.0954 3.3381 5.9214 13 7 2.9921 2.6373 6.8594 14 6 3.9047 3.5804 7.5193 15 6 4.6301 2.8782 8.6381 16 8 4.4090 1.7070 8.8632 17 7 5.5290 3.5499 9.3846 18 6 6.1893 2.9109 10.4020 19 1 5.9889 1.8693 10.6056 20 6 7.1164 3.6031 11.1714 21 7 7.3607 4.8703 10.9233 22 14 8.0156 2.7327 12.5581 23 1 9.2690 2.1321 12.0351 24 1 8.3434 3.7107 13.6263 25 1 7.1491 1.6631 13.1153 26 6 3.6349 2.0109 5.6892 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.7725 3.4822 3.3320 33 1 1.6108 1.3474 5.0744 34 1 1.0700 3.4221 6.2818 35 1 2.4963 4.2865 5.5639 36 1 3.3334 4.4156 7.9246 37 1 4.6285 3.9532 6.7945 38 1 5.7093 4.4852 9.2016 39 1 8.0076 5.3538 11.4606 40 1 4.4467 2.6051 5.2697 41 1 3.9144 0.9701 5.8526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732106205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:23 Heat of formation + Delta-G solvation = 42.416737 kcal Electronic energy + Delta-G solvation = -25852.378019 eV Core-core repulsion = 21896.520089 eV Total energy + Delta-G solvation = -3955.857930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48984 -40.73708 -39.24600 -37.75924 -34.85091 -34.46034 -33.87819 -31.36040 -31.07602 -29.86065 -28.00331 -26.04563 -25.69821 -24.51003 -23.75064 -22.47163 -20.96118 -20.26026 -19.33241 -18.89679 -17.96657 -17.76967 -16.76604 -16.45529 -16.16806 -15.50075 -15.35983 -15.21392 -14.86323 -14.61264 -14.53339 -14.31300 -13.91429 -13.44451 -13.33247 -13.04760 -12.93687 -12.75243 -12.54934 -12.35134 -11.83799 -11.70446 -11.60704 -11.36065 -11.31220 -11.10124 -10.81525 -10.76213 -10.45669 -10.40630 -10.31443 -10.23389 -10.20340 -9.52141 -9.44262 -8.95132 -8.26946 -7.98415 -6.43801 -3.84491 -0.74201 0.32731 0.99474 1.48655 2.47027 2.51096 3.16453 3.25272 3.31390 3.40230 3.85720 3.90985 4.06666 4.14696 4.26481 4.28012 4.65228 4.70687 4.88013 4.91703 4.94542 5.07574 5.21932 5.22955 5.38031 5.46769 5.56512 5.57375 5.59459 5.66837 5.74758 5.87887 5.93074 6.05607 6.20887 6.40590 6.86939 7.02133 7.20193 7.53503 7.59580 8.03812 8.59662 9.16544 9.51969 10.04236 10.74024 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.001936 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.758239 B =14460.779977 C =14964.111416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.108 3.892 4 N -0.248 5.248 5 N -0.250 5.250 6 S 0.414 5.586 7 C -0.292 4.292 8 C 0.605 3.395 9 O -0.505 6.505 10 N -0.709 5.709 11 C 0.119 3.881 12 C -0.014 4.014 13 N -0.432 5.432 14 C 0.011 3.989 15 C 0.445 3.555 16 O -0.573 6.573 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.009 4.009 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.399 0.601 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.071 0.929 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 0.852 -22.291 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.040 4.040 4 N -0.114 5.114 5 N -0.231 5.231 6 S 0.550 5.450 7 C -0.433 4.433 8 C 0.388 3.612 9 O -0.380 6.380 10 N -0.361 5.361 11 C 0.014 3.986 12 C -0.144 4.144 13 N -0.154 5.154 14 C -0.122 4.122 15 C 0.230 3.770 16 O -0.456 6.456 17 N -0.204 5.204 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.139 4.139 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.234 0.766 33 H 0.154 0.846 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.319 0.535 -22.381 25.086 hybrid contribution 0.944 0.335 0.493 1.116 sum -10.375 0.870 -21.888 24.238 Atomic orbital electron populations 1.21666 0.93184 1.02901 1.02174 1.20345 0.97060 0.86277 1.05266 1.23023 0.96274 0.99697 0.84962 1.70622 1.13805 0.98969 1.27955 1.78926 1.18003 1.10684 1.15446 1.82562 1.46101 1.14455 1.01832 1.27784 1.15208 1.00330 1.00007 1.16439 0.77810 0.85041 0.81872 1.90847 1.45016 1.19262 1.82864 1.45866 1.67318 1.16708 1.06202 1.22847 0.99418 0.99381 0.76956 1.24344 1.01119 0.96163 0.92752 1.68816 1.12119 1.19546 1.14959 1.22511 0.96068 0.95618 0.97956 1.19622 0.83775 0.88059 0.85541 1.90540 1.67126 1.16370 1.71594 1.41862 1.35908 1.12954 1.29647 1.19697 1.17941 0.97285 1.07815 0.87928 1.25256 0.97795 0.95681 0.99266 1.69609 1.35278 1.08471 1.41112 0.85856 0.79528 0.78821 0.80098 1.20428 1.20928 1.19382 1.24427 0.95804 1.03398 0.90272 0.92142 0.92570 0.91086 0.89328 0.87390 0.76620 0.84627 0.88534 0.90962 0.89135 0.92166 0.77574 0.91901 0.91049 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 37.15 0.37 -0.66 16 2 C -0.05 -0.39 5.94 -27.89 -0.17 -0.56 16 3 C 0.11 1.02 6.25 -82.84 -0.52 0.50 16 4 N -0.25 -2.60 11.54 33.42 0.39 -2.21 16 5 N -0.25 -2.45 12.51 60.35 0.75 -1.69 16 6 S 0.41 2.78 23.05 -107.50 -2.48 0.30 16 7 C -0.29 -2.54 6.81 -35.95 -0.24 -2.78 16 8 C 0.61 5.91 7.80 -12.63 -0.10 5.81 16 9 O -0.50 -6.33 14.49 5.26 0.08 -6.25 16 10 N -0.71 -5.75 5.38 -54.70 -0.29 -6.04 16 11 C 0.12 1.22 4.59 -67.72 -0.31 0.91 16 12 C -0.01 -0.14 7.45 -7.55 -0.06 -0.20 16 13 N -0.43 -6.54 5.82 -246.13 -1.43 -7.98 16 14 C 0.01 0.17 5.30 -4.98 -0.03 0.15 16 15 C 0.45 10.32 7.85 -10.98 -0.09 10.24 16 16 O -0.57 -15.62 16.01 5.54 0.09 -15.54 16 17 N -0.57 -14.10 5.29 -10.96 -0.06 -14.15 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 22 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.01 -0.12 7.52 -7.56 -0.06 -0.17 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.11 0.96 6.48 -51.93 -0.34 0.63 16 32 H 0.40 2.18 8.18 -40.82 -0.33 1.85 16 33 H 0.14 1.57 7.45 -51.93 -0.39 1.18 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.56 7.90 -51.93 -0.41 0.15 16 36 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 37 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 38 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.07 0.84 7.42 -51.93 -0.39 0.45 16 41 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -34.01 367.63 -8.17 -42.18 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.02 Total: 8.14 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.44 Total: 5.32 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.08 Total: -55.60 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.16 Total: -21.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.48 Total: 0.30 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.01 -8.17 -42.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732106205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.598 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds