Wall clock time and date at job start Tue Mar 31 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50701 * 109.47337 * 2 1 4 4 N 1.31240 * 124.06106 * 270.18542 * 3 2 1 5 5 N 1.27334 * 120.04361 * 180.36661 * 4 3 2 6 6 S 1.56639 * 109.73568 * 359.69292 * 5 4 3 7 7 C 1.38248 * 124.05480 * 89.99895 * 3 2 1 8 8 C 1.47174 * 128.47612 * 359.97438 * 7 3 2 9 9 O 1.21620 * 119.99989 * 359.69868 * 8 7 3 10 10 N 1.34777 * 120.00074 * 179.70503 * 8 7 3 11 11 C 1.46502 * 119.99942 * 180.02562 * 10 8 7 12 12 C 1.53513 * 114.16704 * 204.99849 * 11 10 8 13 13 N 1.47484 * 87.93060 * 220.32609 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46847 * 89.99945 * 22 20 18 24 24 H 1.48493 * 109.47164 * 210.00376 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00260 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.09006 * 109.47484 * 300.00338 * 1 2 3 28 28 H 1.09000 * 109.47140 * 59.99869 * 1 2 3 29 29 H 1.09000 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47603 * 239.99955 * 2 1 3 31 31 H 1.09000 * 109.47140 * 120.00131 * 2 1 3 32 32 H 0.96992 * 120.00120 * 359.97438 * 10 8 7 33 33 H 1.09003 * 113.37948 * 338.07305 * 11 10 8 34 34 H 1.09005 * 113.47855 * 105.56484 * 12 11 10 35 35 H 1.08997 * 113.47719 * 335.09509 * 12 11 10 36 36 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 37 37 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 38 38 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 39 39 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 40 40 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 41 41 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2740 2.1150 -1.0872 5 7 2.7044 3.3101 -0.9981 6 16 2.8502 3.7086 0.5097 7 6 2.2904 2.1507 1.1454 8 6 2.1426 1.7343 2.5493 9 8 1.7411 0.6171 2.8131 10 7 2.4520 2.5912 3.5424 11 6 2.3054 2.1766 4.9399 12 6 2.0954 3.3381 5.9214 13 7 2.9921 2.6373 6.8594 14 6 3.9047 3.5804 7.5193 15 6 4.6301 2.8782 8.6381 16 8 4.4090 1.7070 8.8632 17 7 5.5290 3.5499 9.3846 18 6 6.1893 2.9109 10.4020 19 1 5.9889 1.8693 10.6056 20 6 7.1164 3.6031 11.1714 21 7 7.3607 4.8703 10.9233 22 14 8.0156 2.7327 12.5581 23 1 9.2690 2.1321 12.0351 24 1 8.3434 3.7107 13.6263 25 1 7.1491 1.6631 13.1153 26 6 3.6349 2.0109 5.6892 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.7725 3.4822 3.3320 33 1 1.6108 1.3474 5.0744 34 1 1.0700 3.4221 6.2818 35 1 2.4963 4.2865 5.5639 36 1 3.3334 4.4156 7.9246 37 1 4.6285 3.9532 6.7945 38 1 5.7093 4.4852 9.2016 39 1 8.0076 5.3538 11.4606 40 1 4.4467 2.6051 5.2697 41 1 3.9144 0.9701 5.8526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732106205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:22 Heat of formation + Delta-G solvation = 13.806715 kcal Electronic energy + Delta-G solvation = -25853.618643 eV Core-core repulsion = 21896.520089 eV Total energy + Delta-G solvation = -3957.098554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.19336 -41.67732 -40.28090 -39.43153 -35.96794 -35.50424 -35.23094 -33.28072 -31.94565 -30.93680 -28.77927 -27.29773 -26.94770 -25.58183 -24.74081 -23.31584 -21.73828 -21.20941 -20.94593 -19.90873 -19.54349 -18.56608 -17.88066 -17.57466 -17.16790 -16.62083 -16.53907 -16.35540 -16.04401 -15.68498 -15.58569 -15.46545 -15.13833 -14.79816 -14.35035 -14.10180 -13.80554 -13.68378 -13.55900 -13.50410 -13.16577 -13.02161 -12.75344 -12.45214 -12.42346 -12.34710 -12.12528 -11.95233 -11.84272 -11.54111 -11.49082 -11.18089 -10.98271 -10.84407 -10.38147 -10.24470 -9.99702 -9.77147 -8.46232 -5.94300 -1.41186 -0.29639 0.36230 0.78307 1.37781 1.41693 1.53984 1.70424 1.76026 2.08001 2.29584 2.73670 2.88001 3.20117 3.28968 3.40246 3.51412 3.57602 3.75860 4.05584 4.10641 4.28276 4.29301 4.32318 4.34860 4.41576 4.55570 4.70128 4.79074 4.81704 4.86924 5.00991 5.12350 5.22828 5.31499 5.34785 5.41892 5.87613 6.07457 6.21465 6.54114 6.62402 6.88987 7.14815 7.58676 8.15880 8.71054 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.001936 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.758239 B =14460.779977 C =14964.111416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C 0.101 3.899 4 N -0.272 5.272 5 N -0.284 5.284 6 S 0.508 5.492 7 C -0.311 4.311 8 C 0.608 3.392 9 O -0.537 6.537 10 N -0.694 5.694 11 C 0.135 3.865 12 C 0.001 3.999 13 N -0.474 5.474 14 C 0.025 3.975 15 C 0.439 3.561 16 O -0.622 6.622 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.075 0.925 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.275 1.275 26 C -0.014 4.014 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.415 0.585 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.090 0.910 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 2.925 -23.054 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C -0.047 4.047 4 N -0.137 5.137 5 N -0.265 5.265 6 S 0.644 5.356 7 C -0.451 4.451 8 C 0.392 3.608 9 O -0.414 6.414 10 N -0.346 5.346 11 C 0.030 3.970 12 C -0.128 4.128 13 N -0.196 5.196 14 C -0.107 4.107 15 C 0.227 3.773 16 O -0.507 6.507 17 N -0.214 5.214 18 C -0.462 4.462 19 H 0.093 0.907 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.144 4.144 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.253 0.747 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.327 2.669 -23.182 25.939 hybrid contribution 0.947 -0.267 0.725 1.222 sum -10.380 2.402 -22.457 24.856 Atomic orbital electron populations 1.21626 0.92642 1.03540 1.01598 1.20359 0.97514 0.85977 1.05160 1.23202 0.96236 1.00175 0.85125 1.70678 1.15001 0.99370 1.28606 1.78657 1.18949 1.10858 1.18008 1.82138 1.42899 1.11481 0.99067 1.27720 1.16114 1.02038 0.99261 1.16547 0.77213 0.84656 0.82414 1.90840 1.46457 1.20727 1.83416 1.45634 1.66794 1.17213 1.05001 1.22446 0.97236 0.99420 0.77926 1.24386 1.00779 0.96916 0.90691 1.68732 1.13017 1.20949 1.16942 1.22393 0.96683 0.95433 0.96146 1.20905 0.82675 0.87691 0.86058 1.90507 1.68323 1.18820 1.73085 1.41933 1.36520 1.13207 1.29701 1.19613 1.19906 0.96697 1.09981 0.90699 1.25983 0.97885 0.96390 1.00956 1.69657 1.35474 1.09108 1.41778 0.84972 0.78242 0.77867 0.77540 1.19687 1.19450 1.20010 1.24481 0.97693 1.01777 0.90490 0.93344 0.92352 0.89900 0.88333 0.88496 0.74680 0.86226 0.87438 0.87359 0.86643 0.89164 0.76887 0.91323 0.89223 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 71.98 0.71 -1.23 16 2 C -0.05 -0.79 5.94 29.84 0.18 -0.61 16 3 C 0.10 1.84 6.25 42.65 0.27 2.10 16 4 N -0.27 -5.49 11.54 -48.18 -0.56 -6.04 16 5 N -0.28 -5.11 12.51 37.02 0.46 -4.65 16 6 S 0.51 5.45 23.05 -56.49 -1.30 4.15 16 7 C -0.31 -4.92 6.81 24.62 0.17 -4.76 16 8 C 0.61 11.10 7.80 86.59 0.68 11.78 16 9 O -0.54 -13.46 14.49 -4.10 -0.06 -13.52 16 10 N -0.69 -9.53 5.38 -445.21 -2.40 -11.93 16 11 C 0.14 2.54 4.59 45.44 0.21 2.75 16 12 C 0.00 0.02 7.45 83.57 0.62 0.64 16 13 N -0.47 -13.59 5.82 -932.63 -5.43 -19.02 16 14 C 0.03 0.77 5.30 85.56 0.45 1.22 16 15 C 0.44 20.46 7.85 87.66 0.69 21.15 16 16 O -0.62 -34.93 16.01 -3.08 -0.05 -34.98 16 17 N -0.58 -28.88 5.29 -306.98 -1.62 -30.51 16 18 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 19 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 22 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 C -0.01 -0.36 7.52 83.57 0.63 0.27 16 27 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.78 6.48 -2.39 -0.02 1.77 16 32 H 0.42 2.92 8.18 -92.71 -0.76 2.16 16 33 H 0.12 2.72 7.45 -2.39 -0.02 2.70 16 34 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.11 1.08 7.90 -2.39 -0.02 1.06 16 36 H 0.12 2.97 8.08 -2.39 -0.02 2.95 16 37 H 0.09 2.23 7.30 -2.39 -0.02 2.21 16 38 H 0.40 18.57 7.90 -92.71 -0.73 17.83 16 39 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 40 H 0.09 1.89 7.42 -2.39 -0.02 1.87 16 41 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -76.64 367.63 -3.14 -79.79 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.38 Total: 25.17 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 5.88 Total: 15.16 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -9.26 Total: -120.56 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.11 Total: -48.50 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.30 Total: 4.15 kcal Total: -76.64 -3.14 -79.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732106205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.596 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds