Wall clock time and date at job start Tue Mar 31 2020 22:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99593 * 2 1 4 4 H 1.48500 * 109.47383 * 269.99724 * 3 2 1 5 5 H 1.48500 * 109.47408 * 30.00117 * 3 2 1 6 6 H 1.48505 * 109.46906 * 150.00029 * 3 2 1 7 7 C 1.38797 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99769 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00089 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00257 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47135 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99946 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99687 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99892 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47130 * 180.02562 * 14 13 11 16 16 C 1.53935 * 113.73564 * 86.23324 * 15 14 13 17 17 N 1.48296 * 86.06285 * 138.12918 * 16 15 14 18 18 C 1.46902 * 111.00409 * 222.41947 * 17 16 15 19 19 C 1.50702 * 109.47267 * 289.35248 * 18 17 16 20 20 C 1.38230 * 119.59080 * 95.00044 * 19 18 17 21 21 C 1.38590 * 119.18810 * 180.02562 * 20 19 18 22 22 C 1.38884 * 118.40208 * 359.97438 * 21 20 19 23 23 F 1.35093 * 120.44137 * 179.97438 * 22 21 20 24 24 C 1.38420 * 119.11083 * 0.02562 * 22 21 20 25 25 N 1.31850 * 119.58699 * 274.73149 * 19 18 17 26 26 C 1.47961 * 90.75572 * 335.31010 * 17 16 15 27 27 H 0.96996 * 120.00428 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46889 * 59.99679 * 10 9 7 29 29 H 1.09007 * 109.46550 * 300.00163 * 10 9 7 30 30 H 0.96992 * 120.00176 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.47069 * 59.99899 * 14 13 11 32 32 H 1.09006 * 109.47047 * 300.00275 * 14 13 11 33 33 H 1.09002 * 112.93723 * 314.66502 * 15 14 13 34 34 H 1.09001 * 113.76001 * 252.50503 * 16 15 14 35 35 H 1.09000 * 113.75996 * 23.86319 * 16 15 14 36 36 H 1.08997 * 109.47246 * 49.35399 * 18 17 16 37 37 H 1.09007 * 109.46957 * 169.35176 * 18 17 16 38 38 H 1.07999 * 120.40389 * 0.02562 * 20 19 18 39 39 H 1.07998 * 120.79876 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.63731 * 180.02562 * 24 22 21 41 41 H 1.09007 * 113.75652 * 270.36911 * 26 17 16 42 42 H 1.08993 * 113.76177 * 139.00817 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3441 -2.2961 0.0035 13 7 6.0458 -4.4945 0.0026 14 6 7.4909 -4.7356 0.0032 15 6 7.7566 -6.2423 0.0031 16 6 7.7736 -6.8684 -1.4031 17 7 8.9465 -7.6440 -0.9321 18 6 9.9921 -7.6954 -1.9627 19 6 9.5366 -8.5769 -3.0970 20 6 8.9329 -8.0086 -4.2030 21 6 8.5167 -8.8271 -5.2411 22 6 8.7251 -10.1955 -5.1276 23 9 8.3353 -11.0314 -6.1147 24 6 9.3367 -10.6914 -3.9892 25 7 9.7238 -9.8800 -3.0244 26 6 9.2498 -6.6081 0.0799 27 1 -0.4850 0.8400 0.0004 28 1 3.6441 -3.4313 -0.8893 29 1 3.6433 -3.4317 0.8907 30 1 5.4292 -5.2433 0.0019 31 1 7.9335 -4.2883 0.8932 32 1 7.9341 -4.2887 -0.8868 33 1 7.1351 -6.7833 0.7167 34 1 6.8988 -7.4809 -1.6217 35 1 8.0064 -6.1587 -2.1970 36 1 10.1823 -6.6898 -2.3378 37 1 10.9073 -8.1016 -1.5318 38 1 8.7872 -6.9399 -4.2575 39 1 8.0425 -8.4108 -6.1175 40 1 9.5033 -11.7541 -3.8922 41 1 9.9136 -5.8224 -0.2813 42 1 9.5538 -7.0128 1.0451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732120295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:00 Heat of formation + Delta-G solvation = -10.013852 kcal Electronic energy + Delta-G solvation = -25107.743240 eV Core-core repulsion = 21129.691787 eV Total energy + Delta-G solvation = -3978.051453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.46514 -41.11376 -40.10036 -39.03755 -34.88247 -33.10081 -32.98549 -32.45581 -30.57555 -29.09404 -26.75466 -26.52265 -25.61478 -24.47499 -23.73446 -21.93323 -20.72943 -19.91883 -18.16101 -17.93702 -17.78813 -16.97710 -16.58046 -16.53379 -16.28624 -16.09660 -15.43465 -15.15423 -14.94197 -14.89711 -14.54352 -14.22798 -13.93117 -13.79603 -13.67175 -13.30815 -13.27685 -13.01271 -12.88938 -12.81443 -12.13879 -11.93480 -11.71682 -11.30982 -11.24941 -11.05310 -11.02056 -10.62432 -10.47699 -10.10321 -9.87922 -9.61565 -9.44351 -9.23930 -9.04507 -8.99073 -8.52422 -6.94042 -6.30587 -4.02581 0.32490 0.55262 2.73104 2.93607 2.96108 3.26171 3.31769 3.43829 3.48712 3.51193 3.60300 3.71618 4.01194 4.08891 4.21275 4.25827 4.30651 4.31626 4.66559 4.70196 4.80532 4.86427 4.88145 4.92119 5.00131 5.08378 5.18641 5.25070 5.28206 5.30427 5.31533 5.35802 5.43588 5.61627 5.74334 5.79080 5.85546 5.99086 6.05262 6.45465 6.50127 7.32553 7.56281 7.92431 8.40008 8.44820 9.15482 10.78609 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.001817 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.848875 B =15407.079728 C =16440.239795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.521 6.521 13 N -0.736 5.736 14 C 0.130 3.870 15 C -0.126 4.126 16 C 0.002 3.998 17 N -0.468 5.468 18 C 0.069 3.931 19 C 0.127 3.873 20 C -0.136 4.136 21 C -0.106 4.106 22 C 0.045 3.955 23 F -0.130 7.130 24 C 0.078 3.922 25 N -0.440 5.440 26 C 0.014 3.986 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.077 0.923 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.309 -21.221 -6.939 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.390 5.390 14 C 0.005 3.995 15 C -0.145 4.145 16 C -0.126 4.126 17 N -0.191 5.191 18 C -0.059 4.059 19 C -0.012 4.012 20 C -0.156 4.156 21 C -0.133 4.133 22 C 0.023 3.977 23 F -0.109 7.109 24 C -0.081 4.081 25 N -0.148 5.148 26 C -0.115 4.115 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.185 0.815 41 H 0.095 0.905 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.782 -20.614 -6.041 31.313 hybrid contribution -1.497 0.216 -1.450 2.095 sum 21.285 -20.398 -7.491 30.418 Atomic orbital electron populations 1.69936 1.05908 1.27781 1.48025 1.24721 0.94464 0.98985 0.93196 0.86729 0.81893 0.83275 0.79914 1.19227 1.19934 1.15925 1.22313 0.88252 0.97540 1.58806 0.89376 1.84783 1.09312 1.00087 1.97432 1.23281 0.94021 1.04375 1.05828 1.20291 0.90600 0.82286 0.75198 1.90701 1.58811 1.42234 1.47776 1.45942 1.07337 1.08070 1.77681 1.21304 0.81912 0.93752 1.02494 1.23235 0.97740 0.95304 0.98249 1.24194 0.95921 0.96072 0.96433 1.68751 1.04212 1.37579 1.08557 1.21527 0.96995 0.96722 0.90669 1.21091 0.95158 0.90582 0.94321 1.21974 0.98516 1.01670 0.93483 1.21694 0.99283 0.91735 1.00549 1.18865 1.01616 0.88751 0.88434 1.91537 1.88792 1.70731 1.59797 1.22952 0.95759 1.01090 0.88312 1.67554 1.16091 1.04300 1.26839 1.23954 0.95797 0.93562 0.98209 0.91930 0.88515 0.88428 0.76570 0.91092 0.91592 0.87340 0.89181 0.90685 0.91944 0.88340 0.83820 0.83285 0.81460 0.90457 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.60 27.74 -169.99 -4.72 16.88 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 7 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.33 6.16 36.01 0.22 -2.10 16 11 C 0.53 8.94 7.85 -10.99 -0.09 8.85 16 12 O -0.52 -10.82 15.86 5.56 0.09 -10.74 16 13 N -0.74 -8.43 5.56 -60.29 -0.33 -8.76 16 14 C 0.13 1.22 5.51 -4.04 -0.02 1.20 16 15 C -0.13 -0.85 3.93 -89.69 -0.35 -1.20 16 16 C 0.00 0.02 6.68 -2.57 -0.02 0.00 16 17 N -0.47 -3.42 6.26 -239.43 -1.50 -4.92 16 18 C 0.07 0.45 5.14 -4.97 -0.03 0.43 16 19 C 0.13 0.97 5.95 -82.59 -0.49 0.48 16 20 C -0.14 -0.86 9.20 -39.45 -0.36 -1.22 16 21 C -0.11 -0.68 10.16 -39.21 -0.40 -1.08 16 22 C 0.05 0.34 7.35 -39.28 -0.29 0.05 16 23 F -0.13 -1.05 17.28 2.25 0.04 -1.01 16 24 C 0.08 0.59 11.17 -17.47 -0.20 0.40 16 25 N -0.44 -3.95 10.27 -9.42 -0.10 -4.05 16 26 C 0.01 0.08 7.54 -2.76 -0.02 0.06 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 30 H 0.40 3.53 8.47 -40.82 -0.35 3.18 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.47 7.27 -51.93 -0.38 0.09 16 36 H 0.06 0.31 7.59 -51.93 -0.39 -0.08 16 37 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.14 0.63 7.82 -52.49 -0.41 0.22 16 39 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.08 0.40 7.75 -51.92 -0.40 0.00 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -35.05 374.85 -9.63 -44.68 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.72 Total: -0.55 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.82 Total: -6.03 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -1.15 Total: -43.33 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.72 Total: 16.88 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.05 -9.63 -44.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732120295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.668 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds