Wall clock time and date at job start Tue Mar 31 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47439 * 300.00360 * 3 2 1 6 6 H 1.48501 * 109.46852 * 60.00290 * 3 2 1 7 7 C 1.38794 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99789 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00063 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99438 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00077 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99594 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46883 * 180.02562 * 14 13 11 16 16 C 1.30994 * 120.00204 * 124.99760 * 15 14 13 17 17 C 1.50701 * 119.99826 * 179.71900 * 16 15 14 18 18 N 1.46906 * 109.46794 * 125.27501 * 17 16 15 19 19 C 1.46899 * 110.99658 * 180.02562 * 18 17 16 20 20 C 1.50710 * 109.47002 * 179.97438 * 19 18 17 21 21 C 1.38227 * 120.40585 * 269.72590 * 20 19 18 22 22 N 1.31851 * 120.82053 * 179.67399 * 21 20 19 23 23 C 1.31877 * 121.74704 * 0.63784 * 22 21 20 24 24 C 1.38423 * 120.72598 * 359.65335 * 23 22 21 25 25 F 1.35095 * 120.44468 * 180.02562 * 24 23 22 26 26 C 1.38586 * 120.40185 * 89.99942 * 20 19 18 27 27 H 0.97003 * 120.00310 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47383 * 59.99931 * 10 9 7 29 29 H 1.09004 * 109.47325 * 299.99999 * 10 9 7 30 30 H 0.96999 * 120.00048 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47613 * 59.99379 * 14 13 11 32 32 H 1.09004 * 109.46865 * 299.99589 * 14 13 11 33 33 H 1.08002 * 119.99446 * 304.99290 * 15 14 13 34 34 H 1.08002 * 120.00352 * 0.02562 * 16 15 14 35 35 H 1.08998 * 109.47474 * 245.27493 * 17 16 15 36 36 H 1.09001 * 109.47291 * 5.27780 * 17 16 15 37 37 H 1.00898 * 110.99970 * 56.04982 * 18 17 16 38 38 H 1.08999 * 109.47642 * 299.99582 * 19 18 17 39 39 H 1.08997 * 109.47569 * 60.00519 * 19 18 17 40 40 H 1.08002 * 119.59198 * 0.02562 * 21 20 19 41 41 H 1.07998 * 119.63360 * 179.67348 * 23 22 21 42 42 H 1.08002 * 120.80544 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.4850 -8.6837 -0.0006 16 6 3.5671 -9.6034 0.9286 17 6 4.7183 -10.5761 0.9262 18 7 5.3966 -10.5350 2.2286 19 6 6.5273 -11.4722 2.2630 20 6 7.1973 -11.4018 3.6111 21 6 8.2351 -10.5156 3.8311 22 7 8.8229 -10.4427 5.0091 23 6 8.4583 -11.2131 6.0154 24 6 7.4307 -12.1289 5.8688 25 9 7.0615 -12.9149 6.9036 26 6 6.7842 -12.2287 4.6437 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7313 0.8894 29 1 3.1245 -3.7312 -0.8905 30 1 3.8010 -6.1834 -0.0004 31 1 1.7227 -7.8747 -0.8925 32 1 1.7210 -7.8755 0.8874 33 1 4.2445 -8.6196 -0.7657 34 1 2.8074 -9.6679 1.6934 35 1 4.3428 -11.5829 0.7437 36 1 5.4230 -10.3031 0.1408 37 1 4.7491 -10.7214 2.9796 38 1 6.1648 -12.4855 2.0896 39 1 7.2444 -11.2051 1.4869 40 1 8.5649 -9.8710 3.0297 41 1 8.9669 -11.1284 6.9643 42 1 5.9786 -12.9334 4.4994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732824456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:43 Heat of formation + Delta-G solvation = -31.326966 kcal Electronic energy + Delta-G solvation = -23946.120302 eV Core-core repulsion = 19967.144644 eV Total energy + Delta-G solvation = -3978.975659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.52052 -40.72448 -39.16761 -37.55238 -35.65295 -33.79162 -32.49126 -32.41218 -31.52373 -29.63413 -27.72618 -25.76224 -25.37768 -24.30371 -23.20261 -22.48483 -20.59069 -19.89489 -17.99274 -17.93739 -17.83391 -17.40600 -16.41794 -16.33307 -16.26898 -16.00940 -15.39851 -15.21155 -14.94511 -14.79072 -14.46955 -13.99175 -13.91432 -13.85814 -13.75192 -13.62773 -13.25711 -13.04355 -12.66732 -12.52866 -12.34029 -12.25748 -11.73542 -11.42843 -11.05857 -11.00416 -10.74621 -10.48041 -10.19566 -9.90871 -9.78483 -9.50218 -9.30930 -9.06640 -9.00603 -8.81241 -8.21559 -6.48451 -6.20470 -3.90809 0.29882 0.45775 1.69660 2.99347 3.11286 3.12000 3.22791 3.30323 3.36879 3.38111 3.73868 3.82350 3.87771 4.05322 4.09094 4.21731 4.28219 4.34666 4.50077 4.63169 4.74140 4.93633 5.00774 5.07623 5.12909 5.14864 5.19609 5.21746 5.26557 5.45483 5.48666 5.59166 5.80998 5.91583 6.01346 6.16477 6.25666 6.25887 6.38865 6.65083 6.69930 7.24696 7.61401 7.73559 8.36925 8.62803 9.25071 10.87039 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.001502 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.886216 B =18637.864315 C =19963.882568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.735 5.735 14 C 0.150 3.850 15 C -0.153 4.153 16 C -0.142 4.142 17 C 0.088 3.912 18 N -0.681 5.681 19 C 0.101 3.899 20 C -0.106 4.106 21 C 0.113 3.887 22 N -0.456 5.456 23 C 0.075 3.925 24 C 0.048 3.952 25 F -0.130 7.130 26 C -0.105 4.105 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.400 0.600 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.345 0.655 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.314 -29.450 5.998 34.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.390 5.390 14 C 0.026 3.974 15 C -0.173 4.173 16 C -0.161 4.161 17 C -0.040 4.040 18 N -0.312 5.312 19 C -0.028 4.028 20 C -0.109 4.109 21 C -0.045 4.045 22 N -0.163 5.163 23 C -0.084 4.084 24 C 0.026 3.974 25 F -0.108 7.108 26 C -0.132 4.132 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.234 0.766 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.163 0.837 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.184 0.816 41 H 0.185 0.815 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 16.194 -28.571 5.979 33.381 hybrid contribution 1.139 -0.320 0.206 1.201 sum 17.333 -28.891 6.186 34.255 Atomic orbital electron populations 1.70028 1.05953 1.27328 1.47004 1.24994 0.95029 0.99040 0.94557 0.86114 0.79604 0.81876 0.77883 1.19600 1.20574 1.20580 1.22917 0.94967 0.91636 1.58767 0.90846 1.85392 1.05011 0.96368 1.96714 1.23529 1.06539 0.95301 1.04984 1.20336 0.86508 0.86306 0.75109 1.90702 1.15396 1.85607 1.47642 1.45977 1.10076 1.05074 1.77872 1.20262 0.94244 0.80325 1.02580 1.22919 0.99030 0.96058 0.99252 1.22704 0.97864 0.96977 0.98561 1.21043 0.94214 0.97094 0.91638 1.60521 1.12106 1.53449 1.05132 1.20842 0.93872 0.94960 0.93168 1.20709 0.97499 0.96424 0.96230 1.22847 0.91791 0.95314 0.94544 1.67818 1.27275 1.21268 0.99929 1.22996 0.94286 0.91695 0.99380 1.18799 0.98517 0.94400 0.85646 1.91541 1.90684 1.72287 1.56335 1.21593 1.00120 1.00043 0.91460 0.92251 0.89162 0.89189 0.76646 0.90808 0.91309 0.86584 0.86878 0.93992 0.90072 0.83672 0.93591 0.89010 0.81634 0.81506 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.59 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 11 C 0.53 9.99 7.85 -10.98 -0.09 9.90 16 12 O -0.52 -11.89 15.86 5.55 0.09 -11.80 16 13 N -0.74 -9.82 5.55 -61.47 -0.34 -10.16 16 14 C 0.15 1.69 6.11 -5.19 -0.03 1.66 16 15 C -0.15 -1.20 9.24 -36.02 -0.33 -1.53 16 16 C -0.14 -0.96 9.38 -36.02 -0.34 -1.30 16 17 C 0.09 0.45 6.12 -4.97 -0.03 0.42 16 18 N -0.68 -3.60 6.48 -116.33 -0.75 -4.35 16 19 C 0.10 0.40 5.84 -4.97 -0.03 0.37 16 20 C -0.11 -0.56 5.41 -104.49 -0.57 -1.13 16 21 C 0.11 0.73 10.86 -17.55 -0.19 0.54 16 22 N -0.46 -3.70 10.36 -13.20 -0.14 -3.83 16 23 C 0.07 0.52 11.17 -17.46 -0.20 0.32 16 24 C 0.05 0.32 7.35 -39.28 -0.29 0.03 16 25 F -0.13 -0.96 17.28 2.25 0.04 -0.92 16 26 C -0.11 -0.57 9.85 -39.21 -0.39 -0.95 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 30 H 0.40 4.22 8.46 -40.82 -0.35 3.88 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 33 H 0.12 0.77 7.84 -52.49 -0.41 0.36 16 34 H 0.11 0.78 7.84 -52.49 -0.41 0.37 16 35 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.08 0.39 7.79 -51.93 -0.40 -0.02 16 37 H 0.35 1.75 8.72 -39.29 -0.34 1.41 16 38 H 0.05 0.14 8.10 -51.93 -0.42 -0.28 16 39 H 0.09 0.30 8.09 -51.93 -0.42 -0.12 16 40 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -35.75 388.01 -9.48 -45.23 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.66 Total: 0.54 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.05 Total: -7.59 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.50 Total: -43.89 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.75 -9.48 -45.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732824456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.900 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds