Wall clock time and date at job start Tue Mar 31 2020 22:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47439 * 300.00360 * 3 2 1 6 6 H 1.48501 * 109.46852 * 60.00290 * 3 2 1 7 7 C 1.38794 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99789 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00063 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99438 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00077 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99594 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46883 * 180.02562 * 14 13 11 16 16 C 1.30994 * 120.00204 * 124.99760 * 15 14 13 17 17 C 1.50701 * 119.99826 * 179.71900 * 16 15 14 18 18 N 1.46906 * 109.46794 * 125.27501 * 17 16 15 19 19 C 1.46899 * 110.99658 * 180.02562 * 18 17 16 20 20 C 1.50710 * 109.47002 * 179.97438 * 19 18 17 21 21 C 1.38227 * 120.40585 * 269.72590 * 20 19 18 22 22 N 1.31851 * 120.82053 * 179.67399 * 21 20 19 23 23 C 1.31877 * 121.74704 * 0.63784 * 22 21 20 24 24 C 1.38423 * 120.72598 * 359.65335 * 23 22 21 25 25 F 1.35095 * 120.44468 * 180.02562 * 24 23 22 26 26 C 1.38586 * 120.40185 * 89.99942 * 20 19 18 27 27 H 0.97003 * 120.00310 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47383 * 59.99931 * 10 9 7 29 29 H 1.09004 * 109.47325 * 299.99999 * 10 9 7 30 30 H 0.96999 * 120.00048 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47613 * 59.99379 * 14 13 11 32 32 H 1.09004 * 109.46865 * 299.99589 * 14 13 11 33 33 H 1.08002 * 119.99446 * 304.99290 * 15 14 13 34 34 H 1.08002 * 120.00352 * 0.02562 * 16 15 14 35 35 H 1.08998 * 109.47474 * 245.27493 * 17 16 15 36 36 H 1.09001 * 109.47291 * 5.27780 * 17 16 15 37 37 H 1.00898 * 110.99970 * 56.04982 * 18 17 16 38 38 H 1.08999 * 109.47642 * 299.99582 * 19 18 17 39 39 H 1.08997 * 109.47569 * 60.00519 * 19 18 17 40 40 H 1.08002 * 119.59198 * 0.02562 * 21 20 19 41 41 H 1.07998 * 119.63360 * 179.67348 * 23 22 21 42 42 H 1.08002 * 120.80544 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.4850 -8.6837 -0.0006 16 6 3.5671 -9.6034 0.9286 17 6 4.7183 -10.5761 0.9262 18 7 5.3966 -10.5350 2.2286 19 6 6.5273 -11.4722 2.2630 20 6 7.1973 -11.4018 3.6111 21 6 8.2351 -10.5156 3.8311 22 7 8.8229 -10.4427 5.0091 23 6 8.4583 -11.2131 6.0154 24 6 7.4307 -12.1289 5.8688 25 9 7.0615 -12.9149 6.9036 26 6 6.7842 -12.2287 4.6437 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7313 0.8894 29 1 3.1245 -3.7312 -0.8905 30 1 3.8010 -6.1834 -0.0004 31 1 1.7227 -7.8747 -0.8925 32 1 1.7210 -7.8755 0.8874 33 1 4.2445 -8.6196 -0.7657 34 1 2.8074 -9.6679 1.6934 35 1 4.3428 -11.5829 0.7437 36 1 5.4230 -10.3031 0.1408 37 1 4.7491 -10.7214 2.9796 38 1 6.1648 -12.4855 2.0896 39 1 7.2444 -11.2051 1.4869 40 1 8.5649 -9.8710 3.0297 41 1 8.9669 -11.1284 6.9643 42 1 5.9786 -12.9334 4.4994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732824456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:42 Heat of formation + Delta-G solvation = -57.301924 kcal Electronic energy + Delta-G solvation = -23947.246661 eV Core-core repulsion = 19967.144644 eV Total energy + Delta-G solvation = -3980.102018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03758 -41.16925 -40.59212 -38.04602 -36.52746 -34.61479 -34.55847 -33.13347 -32.08040 -30.96547 -28.48713 -27.64576 -26.28781 -24.77321 -23.82224 -22.87139 -21.84509 -20.70961 -19.77298 -18.44370 -18.40478 -17.84676 -17.80427 -17.36297 -16.88521 -16.87532 -16.77908 -16.37192 -15.88727 -15.79410 -15.47297 -14.98058 -14.84191 -14.72094 -14.43112 -14.35637 -14.22262 -14.05211 -13.77647 -13.53009 -13.15312 -13.04463 -12.89842 -12.78757 -12.67687 -12.57775 -12.02553 -11.70096 -11.15342 -11.08184 -10.92221 -10.66654 -10.39236 -10.26496 -10.03802 -9.91372 -9.32922 -8.66185 -8.34259 -6.12297 -0.15459 0.01603 1.03724 1.31913 1.42111 1.50289 1.61272 1.62026 2.27610 2.46679 2.53619 2.94062 2.99999 3.33554 3.33959 3.47365 3.66226 3.70578 3.80475 3.87839 4.01050 4.11531 4.11804 4.30618 4.34819 4.48508 4.52424 4.58754 4.60921 4.71968 4.73263 4.79831 4.82206 4.91354 5.06399 5.39587 5.42980 5.58046 5.68677 5.80263 5.97798 6.20782 6.34858 6.52997 6.78233 7.07226 7.25263 8.75267 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.001502 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.886216 B =18637.864315 C =19963.882568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.709 5.709 14 C 0.149 3.851 15 C -0.161 4.161 16 C -0.127 4.127 17 C 0.092 3.908 18 N -0.693 5.693 19 C 0.105 3.895 20 C -0.101 4.101 21 C 0.103 3.897 22 N -0.484 5.484 23 C 0.064 3.936 24 C 0.035 3.965 25 F -0.137 7.137 26 C -0.102 4.102 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.417 0.583 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.345 0.655 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.178 0.822 41 H 0.179 0.821 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.694 -30.353 5.500 36.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.363 5.363 14 C 0.025 3.975 15 C -0.180 4.180 16 C -0.147 4.147 17 C -0.036 4.036 18 N -0.324 5.324 19 C -0.023 4.023 20 C -0.104 4.104 21 C -0.055 4.055 22 N -0.191 5.191 23 C -0.094 4.094 24 C 0.013 3.987 25 F -0.116 7.116 26 C -0.129 4.129 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.163 0.837 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.195 0.805 41 H 0.196 0.804 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 18.632 -29.519 5.483 35.335 hybrid contribution 0.439 -0.211 0.388 0.622 sum 19.071 -29.730 5.870 35.805 Atomic orbital electron populations 1.70190 1.07979 1.28544 1.48092 1.26135 0.95977 1.03339 0.93746 0.84896 0.78627 0.76293 0.78067 1.17997 1.19879 1.19988 1.23248 0.95382 0.91977 1.58747 0.89862 1.85572 1.10672 0.99302 1.97050 1.23374 1.03512 0.94306 1.06853 1.20100 0.86231 0.86758 0.75135 1.90689 1.17476 1.86142 1.50396 1.45755 1.10367 1.04869 1.75279 1.20360 0.95741 0.79632 1.01717 1.22718 0.98519 0.95962 1.00819 1.22884 0.97996 0.96403 0.97394 1.21022 0.93623 0.97132 0.91805 1.60507 1.12460 1.54245 1.05200 1.20866 0.93523 0.95554 0.92404 1.20827 0.96992 0.95704 0.96855 1.23162 0.92113 0.95767 0.94438 1.67815 1.28342 1.22207 1.00777 1.23213 0.94630 0.91750 0.99782 1.18931 0.99004 0.94660 0.86068 1.91521 1.90783 1.72493 1.56758 1.21854 1.00136 1.00089 0.90859 0.91997 0.87274 0.87060 0.74590 0.91659 0.92428 0.84726 0.87299 0.92587 0.89203 0.83688 0.92042 0.88002 0.80455 0.80395 0.81780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.34 9.50 67.95 0.65 -30.70 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.74 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.71 16 11 C 0.53 19.75 7.85 87.66 0.69 20.44 16 12 O -0.57 -26.63 15.86 -3.04 -0.05 -26.68 16 13 N -0.71 -17.74 5.55 -466.77 -2.59 -20.33 16 14 C 0.15 3.19 6.11 85.63 0.52 3.71 16 15 C -0.16 -2.12 9.24 25.65 0.24 -1.88 16 16 C -0.13 -1.40 9.38 25.65 0.24 -1.16 16 17 C 0.09 0.61 6.12 85.56 0.52 1.14 16 18 N -0.69 -5.26 6.48 -521.96 -3.38 -8.64 16 19 C 0.11 0.50 5.84 85.56 0.50 1.00 16 20 C -0.10 -0.87 5.41 -19.78 -0.11 -0.97 16 21 C 0.10 1.20 10.86 84.69 0.92 2.12 16 22 N -0.48 -7.60 10.36 -195.66 -2.03 -9.63 16 23 C 0.06 0.87 11.17 84.73 0.95 1.81 16 24 C 0.03 0.44 7.35 22.47 0.17 0.60 16 25 F -0.14 -1.95 17.28 44.97 0.78 -1.17 16 26 C -0.10 -0.94 9.85 22.51 0.22 -0.71 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 29 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 30 H 0.42 7.62 8.46 -92.71 -0.78 6.83 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.38 7.79 -2.38 -0.02 1.37 16 33 H 0.14 1.31 7.84 -2.91 -0.02 1.29 16 34 H 0.11 1.30 7.84 -2.91 -0.02 1.27 16 35 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.09 0.49 7.79 -2.39 -0.02 0.48 16 37 H 0.34 2.62 8.72 -89.70 -0.78 1.83 16 38 H 0.06 0.14 8.10 -2.39 -0.02 0.12 16 39 H 0.10 0.31 8.09 -2.39 -0.02 0.29 16 40 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -79.83 388.01 -0.22 -80.05 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.51 Total: 14.41 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.41 Total: -8.10 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -7.71 Total: -94.58 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.17 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -79.83 -0.22 -80.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732824456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.747 kcal (2) G-P(sol) polarization free energy of solvation -79.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds