Wall clock time and date at job start Tue Mar 31 2020 22:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47355 * 270.00049 * 3 2 1 5 5 H 1.48495 * 109.47553 * 30.00659 * 3 2 1 6 6 H 1.48511 * 109.46809 * 150.00465 * 3 2 1 7 7 C 1.38802 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00211 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99606 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99801 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47112 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00402 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00057 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00222 * 180.27603 * 13 11 10 15 15 C 1.52998 * 109.47276 * 174.32303 * 14 13 11 16 16 N 1.46904 * 115.55023 * 269.84628 * 15 14 13 17 17 C 1.46900 * 110.99801 * 294.96186 * 16 15 14 18 18 C 1.50697 * 109.46860 * 190.17437 * 17 16 15 19 19 C 1.38229 * 120.40728 * 90.00370 * 18 17 16 20 20 N 1.31850 * 120.82344 * 179.97438 * 19 18 17 21 21 C 1.31872 * 121.74473 * 359.97438 * 20 19 18 22 22 C 1.38414 * 120.73306 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.44884 * 180.02562 * 22 21 20 24 24 C 1.38589 * 120.40306 * 269.71686 * 18 17 16 25 25 C 1.52998 * 117.49968 * 124.17317 * 15 14 13 26 26 C 1.53000 * 117.49939 * 55.51324 * 15 14 13 27 27 H 0.97008 * 119.99543 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46812 * 60.00051 * 10 9 7 29 29 H 1.08997 * 109.47032 * 300.00439 * 10 9 7 30 30 H 0.97006 * 120.00047 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.46785 * 294.32515 * 14 13 11 32 32 H 1.08995 * 109.46569 * 54.32158 * 14 13 11 33 33 H 1.00896 * 110.99551 * 58.91379 * 16 15 14 34 34 H 1.09003 * 109.46890 * 310.17180 * 17 16 15 35 35 H 1.09002 * 109.47214 * 70.16887 * 17 16 15 36 36 H 1.08004 * 119.58908 * 359.97438 * 19 18 17 37 37 H 1.08010 * 119.63203 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.80263 * 0.02562 * 24 18 17 39 39 H 1.09002 * 117.49782 * 0.02562 * 25 15 14 40 40 H 1.09000 * 117.49675 * 145.01837 * 25 15 14 41 41 H 1.09000 * 117.50216 * 214.98219 * 26 15 14 42 42 H 1.09002 * 117.49562 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5729 -3.2327 -0.0021 12 8 6.3440 -2.2966 -0.0025 13 7 6.0455 -4.4949 -0.0016 14 6 7.4905 -4.7361 0.0034 15 6 7.7568 -6.2360 0.1456 16 7 7.8874 -6.7284 1.5235 17 6 9.0713 -6.1552 2.1774 18 6 9.3152 -6.8634 3.4850 19 6 10.1211 -7.9854 3.5334 20 7 10.3405 -8.6110 4.6731 21 6 9.8062 -8.1976 5.8056 22 6 8.9882 -7.0814 5.8358 23 9 8.4443 -6.6625 6.9994 24 6 8.7389 -6.3942 4.6549 25 6 8.6161 -6.9059 -0.9285 26 6 7.1089 -7.1688 -0.8795 27 1 -0.4850 0.8401 0.0004 28 1 3.6431 -3.4319 -0.8907 29 1 3.6438 -3.4315 0.8892 30 1 5.4288 -5.2437 -0.0009 31 1 7.9219 -4.3774 -0.9311 32 1 7.9444 -4.2055 0.8403 33 1 7.0521 -6.5376 2.0563 34 1 9.9395 -6.2786 1.5299 35 1 8.9053 -5.0942 2.3641 36 1 10.5769 -8.3541 2.6263 37 1 10.0091 -8.7359 6.7197 38 1 8.1082 -5.5175 4.6478 39 1 8.9921 -6.2780 -1.7362 40 1 9.2781 -7.7122 -0.6128 41 1 6.7799 -8.1481 -0.5317 42 1 6.4926 -6.7139 -1.6550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733237171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:34 Heat of formation + Delta-G solvation = -19.775989 kcal Electronic energy + Delta-G solvation = -25427.344604 eV Core-core repulsion = 21448.869834 eV Total energy + Delta-G solvation = -3978.474771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.38576 -40.66376 -39.79787 -38.44957 -35.11862 -33.96537 -32.47470 -32.31770 -31.12513 -29.92943 -26.68459 -26.12279 -25.59214 -24.19028 -23.08050 -22.22120 -20.48326 -20.09759 -18.06316 -17.84701 -17.76832 -17.29588 -16.82418 -16.36624 -16.22912 -15.98996 -15.63559 -15.14867 -15.01264 -14.67691 -14.42035 -13.94736 -13.92171 -13.80997 -13.56373 -13.43554 -13.31769 -13.02995 -12.86245 -12.78719 -12.09869 -11.96919 -11.79951 -11.30939 -11.04357 -10.98219 -10.71641 -10.56694 -10.29073 -10.11170 -9.89142 -9.59624 -9.39168 -9.13948 -9.04326 -9.00442 -8.55112 -6.96604 -6.32445 -4.04718 0.40837 0.57882 2.65994 2.87482 3.02121 3.11735 3.29815 3.42390 3.46887 3.48162 3.62690 3.69876 3.94733 4.14967 4.20920 4.23746 4.29522 4.39958 4.54524 4.58387 4.59372 4.70793 4.91515 5.04010 5.06580 5.15782 5.25579 5.29489 5.30754 5.35490 5.40414 5.54512 5.55761 5.62769 5.70178 5.80768 5.94957 6.12093 6.37687 6.43746 6.77594 7.32658 7.50030 7.90584 8.37938 8.38968 9.13578 10.76738 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.002221 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.446237 B =12605.528322 C =14065.668248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.735 5.735 14 C 0.131 3.869 15 C 0.013 3.987 16 N -0.644 5.644 17 C 0.098 3.902 18 C -0.099 4.099 19 C 0.109 3.891 20 N -0.458 5.458 21 C 0.072 3.928 22 C 0.050 3.950 23 F -0.129 7.129 24 C -0.103 4.103 25 C -0.148 4.148 26 C -0.152 4.152 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.349 0.651 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.147 0.853 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.713 -19.477 4.987 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.390 5.390 14 C 0.005 3.995 15 C -0.079 4.079 16 N -0.274 5.274 17 C -0.031 4.031 18 C -0.102 4.102 19 C -0.048 4.048 20 N -0.165 5.165 21 C -0.087 4.087 22 C 0.029 3.971 23 F -0.108 7.108 24 C -0.131 4.131 25 C -0.186 4.186 26 C -0.190 4.190 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.235 0.765 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.169 0.831 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.181 0.819 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 22.676 -19.109 4.864 30.050 hybrid contribution -2.159 1.102 0.484 2.472 sum 20.517 -18.007 5.348 27.817 Atomic orbital electron populations 1.69939 1.05906 1.27794 1.47947 1.24720 0.94465 0.98980 0.93175 0.86732 0.81865 0.83285 0.79943 1.19190 1.19911 1.15967 1.22305 0.88195 0.97545 1.58900 0.89367 1.84796 1.09386 0.99945 1.97434 1.23275 0.93885 1.04481 1.05822 1.20325 0.90656 0.82237 0.75191 1.90706 1.58791 1.42241 1.47683 1.46006 1.07100 1.08119 1.77748 1.21280 0.82187 0.93207 1.02804 1.21678 1.08408 0.90809 0.87053 1.60340 1.05835 1.60225 1.01023 1.20816 0.95070 0.95922 0.91278 1.20690 0.97573 0.96978 0.94943 1.22764 0.94906 0.91081 0.96098 1.67785 1.20608 1.29848 0.98274 1.22941 0.94164 0.93625 0.97941 1.18807 0.98644 0.97188 0.82498 1.91549 1.83899 1.89554 1.45755 1.21675 0.99692 1.00598 0.91092 1.23116 0.94243 1.02563 0.98647 1.23111 0.95858 1.00479 0.99518 0.91908 0.88466 0.88489 0.76507 0.91016 0.91106 0.83147 0.88878 0.92973 0.81889 0.81609 0.83523 0.88255 0.87828 0.87705 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.33 13.97 55.49 0.78 -25.56 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.59 27.74 -169.99 -4.71 16.88 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.30 6.16 36.00 0.22 -2.08 16 11 C 0.53 8.85 7.85 -10.99 -0.09 8.77 16 12 O -0.52 -10.75 15.85 5.56 0.09 -10.66 16 13 N -0.73 -8.33 5.46 -60.30 -0.33 -8.66 16 14 C 0.13 1.27 5.76 -4.04 -0.02 1.24 16 15 C 0.01 0.09 1.83 -131.60 -0.24 -0.15 16 16 N -0.64 -4.21 6.55 -101.22 -0.66 -4.87 16 17 C 0.10 0.60 5.52 -4.98 -0.03 0.58 16 18 C -0.10 -0.68 5.48 -104.50 -0.57 -1.25 16 19 C 0.11 0.79 10.86 -17.55 -0.19 0.59 16 20 N -0.46 -3.95 10.36 -13.19 -0.14 -4.09 16 21 C 0.07 0.56 11.17 -17.47 -0.20 0.36 16 22 C 0.05 0.42 7.35 -39.28 -0.29 0.13 16 23 F -0.13 -1.19 17.28 2.25 0.04 -1.16 16 24 C -0.10 -0.79 9.85 -39.21 -0.39 -1.17 16 25 C -0.15 -0.86 10.01 -26.69 -0.27 -1.12 16 26 C -0.15 -0.94 9.59 -26.69 -0.26 -1.20 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 29 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.40 3.58 8.06 -40.82 -0.33 3.26 16 31 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 32 H 0.07 0.76 6.64 -51.93 -0.34 0.42 16 33 H 0.35 2.44 8.90 -39.29 -0.35 2.09 16 34 H 0.09 0.49 7.94 -51.93 -0.41 0.08 16 35 H 0.05 0.36 6.93 -51.93 -0.36 0.00 16 36 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.10 0.55 8.03 -51.93 -0.42 0.13 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -33.98 379.27 -8.90 -42.88 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.58 Total: 2.22 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.10 Total: -7.18 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.35 Total: -43.17 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.98 -8.90 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733237171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.106 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds