Wall clock time and date at job start Tue Mar 31 2020 22:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47355 * 270.00049 * 3 2 1 5 5 H 1.48495 * 109.47553 * 30.00659 * 3 2 1 6 6 H 1.48511 * 109.46809 * 150.00465 * 3 2 1 7 7 C 1.38802 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00211 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99606 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99801 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47112 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00402 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00057 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00222 * 180.27603 * 13 11 10 15 15 C 1.52998 * 109.47276 * 174.32303 * 14 13 11 16 16 N 1.46904 * 115.55023 * 269.84628 * 15 14 13 17 17 C 1.46900 * 110.99801 * 294.96186 * 16 15 14 18 18 C 1.50697 * 109.46860 * 190.17437 * 17 16 15 19 19 C 1.38229 * 120.40728 * 90.00370 * 18 17 16 20 20 N 1.31850 * 120.82344 * 179.97438 * 19 18 17 21 21 C 1.31872 * 121.74473 * 359.97438 * 20 19 18 22 22 C 1.38414 * 120.73306 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.44884 * 180.02562 * 22 21 20 24 24 C 1.38589 * 120.40306 * 269.71686 * 18 17 16 25 25 C 1.52998 * 117.49968 * 124.17317 * 15 14 13 26 26 C 1.53000 * 117.49939 * 55.51324 * 15 14 13 27 27 H 0.97008 * 119.99543 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46812 * 60.00051 * 10 9 7 29 29 H 1.08997 * 109.47032 * 300.00439 * 10 9 7 30 30 H 0.97006 * 120.00047 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.46785 * 294.32515 * 14 13 11 32 32 H 1.08995 * 109.46569 * 54.32158 * 14 13 11 33 33 H 1.00896 * 110.99551 * 58.91379 * 16 15 14 34 34 H 1.09003 * 109.46890 * 310.17180 * 17 16 15 35 35 H 1.09002 * 109.47214 * 70.16887 * 17 16 15 36 36 H 1.08004 * 119.58908 * 359.97438 * 19 18 17 37 37 H 1.08010 * 119.63203 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.80263 * 0.02562 * 24 18 17 39 39 H 1.09002 * 117.49782 * 0.02562 * 25 15 14 40 40 H 1.09000 * 117.49675 * 145.01837 * 25 15 14 41 41 H 1.09000 * 117.50216 * 214.98219 * 26 15 14 42 42 H 1.09002 * 117.49562 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5729 -3.2327 -0.0021 12 8 6.3440 -2.2966 -0.0025 13 7 6.0455 -4.4949 -0.0016 14 6 7.4905 -4.7361 0.0034 15 6 7.7568 -6.2360 0.1456 16 7 7.8874 -6.7284 1.5235 17 6 9.0713 -6.1552 2.1774 18 6 9.3152 -6.8634 3.4850 19 6 10.1211 -7.9854 3.5334 20 7 10.3405 -8.6110 4.6731 21 6 9.8062 -8.1976 5.8056 22 6 8.9882 -7.0814 5.8358 23 9 8.4443 -6.6625 6.9994 24 6 8.7389 -6.3942 4.6549 25 6 8.6161 -6.9059 -0.9285 26 6 7.1089 -7.1688 -0.8795 27 1 -0.4850 0.8401 0.0004 28 1 3.6431 -3.4319 -0.8907 29 1 3.6438 -3.4315 0.8892 30 1 5.4288 -5.2437 -0.0009 31 1 7.9219 -4.3774 -0.9311 32 1 7.9444 -4.2055 0.8403 33 1 7.0521 -6.5376 2.0563 34 1 9.9395 -6.2786 1.5299 35 1 8.9053 -5.0942 2.3641 36 1 10.5769 -8.3541 2.6263 37 1 10.0091 -8.7359 6.7197 38 1 8.1082 -5.5175 4.6478 39 1 8.9921 -6.2780 -1.7362 40 1 9.2781 -7.7122 -0.6128 41 1 6.7799 -8.1481 -0.5317 42 1 6.4926 -6.7139 -1.6550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733237171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:33 Heat of formation + Delta-G solvation = -44.240874 kcal Electronic energy + Delta-G solvation = -25428.405481 eV Core-core repulsion = 21448.869834 eV Total energy + Delta-G solvation = -3979.535648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.04650 -41.25613 -40.83040 -39.31368 -35.74820 -34.99791 -34.67936 -32.88381 -31.69345 -31.29241 -27.96401 -27.42629 -26.72895 -24.76609 -23.61125 -22.76951 -21.71592 -20.76321 -19.86203 -18.46650 -18.42229 -18.03073 -17.81446 -17.48968 -17.11879 -16.94198 -16.84764 -16.42560 -16.06708 -15.75741 -15.40805 -15.02356 -14.92193 -14.67936 -14.57246 -14.36325 -14.22470 -14.09346 -13.78219 -13.43955 -13.34962 -13.32452 -13.01897 -12.69725 -12.54607 -12.26717 -11.89009 -11.49852 -11.34275 -11.18369 -10.95272 -10.76913 -10.67134 -10.55048 -10.20212 -9.96317 -9.59868 -9.01029 -8.52734 -6.23592 -0.15604 -0.00652 0.97528 1.30270 1.45222 1.53187 1.54229 2.13744 2.23865 2.47586 2.68228 2.85532 2.87145 2.94142 3.09448 3.42416 3.57441 3.61457 3.69207 3.82216 3.86677 3.96214 4.05486 4.11808 4.21302 4.37308 4.45420 4.53015 4.65592 4.68371 4.75693 4.80718 4.84176 4.87623 5.04439 5.12029 5.32067 5.38161 5.56545 5.69562 5.89243 6.10479 6.22272 6.42235 6.75979 6.92454 7.15256 8.59587 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.002221 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.446237 B =12605.528322 C =14065.668248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.176 6.176 10 C -0.112 4.112 11 C 0.535 3.465 12 O -0.563 6.563 13 N -0.708 5.708 14 C 0.132 3.868 15 C 0.012 3.988 16 N -0.639 5.639 17 C 0.102 3.898 18 C -0.096 4.096 19 C 0.109 3.891 20 N -0.477 5.477 21 C 0.069 3.931 22 C 0.035 3.965 23 F -0.138 7.138 24 C -0.109 4.109 25 C -0.136 4.136 26 C -0.148 4.148 27 H 0.277 0.723 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.415 0.585 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.347 0.653 34 H 0.107 0.893 35 H 0.045 0.955 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.150 0.850 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.338 -20.725 4.435 30.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.263 4.263 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.362 5.362 14 C 0.007 3.993 15 C -0.081 4.081 16 N -0.269 5.269 17 C -0.027 4.027 18 C -0.098 4.098 19 C -0.048 4.048 20 N -0.185 5.185 21 C -0.089 4.089 22 C 0.013 3.987 23 F -0.117 7.117 24 C -0.136 4.136 25 C -0.174 4.174 26 C -0.186 4.186 27 H 0.086 0.914 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.166 0.834 34 H 0.125 0.875 35 H 0.063 0.937 36 H 0.202 0.798 37 H 0.200 0.800 38 H 0.168 0.832 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 24.298 -20.420 4.316 32.031 hybrid contribution -2.623 1.302 0.636 2.996 sum 21.675 -19.118 4.952 29.322 Atomic orbital electron populations 1.70019 1.07298 1.29014 1.49119 1.25577 0.95290 1.02287 0.92944 0.85863 0.80658 0.79606 0.80217 1.18671 1.18427 1.16064 1.22457 0.90258 0.96666 1.58222 0.91927 1.84712 1.06417 1.06241 1.97587 1.23271 0.95991 0.99569 1.07426 1.19948 0.89326 0.83398 0.75264 1.90697 1.59294 1.43897 1.50277 1.45777 1.08507 1.06649 1.75244 1.21403 0.80337 0.95344 1.02266 1.21499 1.10000 0.88985 0.87569 1.60389 1.05822 1.59812 1.00860 1.20813 0.95447 0.95298 0.91116 1.20729 0.97301 0.96888 0.94919 1.23137 0.94448 0.90801 0.96445 1.67837 1.21287 1.30529 0.98839 1.23211 0.93687 0.93487 0.98518 1.18952 0.99425 0.97863 0.82441 1.91521 1.84166 1.89729 1.46305 1.21829 0.99760 1.00714 0.91283 1.23200 0.94155 1.02323 0.97745 1.23150 0.96323 1.00292 0.98848 0.91374 0.86853 0.86925 0.74744 0.91347 0.92029 0.83444 0.87501 0.93707 0.79838 0.79990 0.83176 0.87812 0.86761 0.87231 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 13.97 21.65 0.30 -55.16 16 2 C 0.04 2.59 5.50 84.86 0.47 3.05 16 3 Si 0.91 44.63 27.74 68.60 1.90 46.54 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 7 C -0.53 -30.38 10.04 67.96 0.68 -29.70 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 9 S -0.18 -8.72 18.55 -56.49 -1.05 -9.76 16 10 C -0.11 -4.01 6.16 71.23 0.44 -3.57 16 11 C 0.54 17.11 7.85 87.66 0.69 17.80 16 12 O -0.56 -22.89 15.85 -3.04 -0.05 -22.94 16 13 N -0.71 -14.54 5.46 -463.07 -2.53 -17.07 16 14 C 0.13 2.28 5.76 86.38 0.50 2.78 16 15 C 0.01 0.13 1.83 3.53 0.01 0.14 16 16 N -0.64 -6.80 6.55 -474.14 -3.11 -9.91 16 17 C 0.10 1.04 5.52 85.56 0.47 1.51 16 18 C -0.10 -1.16 5.48 -19.78 -0.11 -1.27 16 19 C 0.11 1.36 10.86 84.69 0.92 2.28 16 20 N -0.48 -7.60 10.36 -195.66 -2.03 -9.63 16 21 C 0.07 1.02 11.17 84.73 0.95 1.97 16 22 C 0.03 0.56 7.35 22.47 0.17 0.72 16 23 F -0.14 -2.56 17.28 44.97 0.78 -1.78 16 24 C -0.11 -1.57 9.85 22.51 0.22 -1.35 16 25 C -0.14 -1.14 10.01 30.62 0.31 -0.84 16 26 C -0.15 -1.39 9.59 30.62 0.29 -1.10 16 27 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 28 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 29 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 30 H 0.42 6.28 8.06 -92.70 -0.75 5.53 16 31 H 0.07 1.29 7.88 -2.39 -0.02 1.27 16 32 H 0.06 1.24 6.64 -2.39 -0.02 1.22 16 33 H 0.35 4.08 8.90 -89.70 -0.80 3.28 16 34 H 0.11 0.82 7.94 -2.39 -0.02 0.80 16 35 H 0.04 0.55 6.93 -2.39 -0.02 0.53 16 36 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.10 0.82 8.03 -2.39 -0.02 0.80 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -73.64 379.27 -0.29 -73.93 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.51 Total: 13.34 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 6.00 Total: -7.56 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -7.36 Total: -91.76 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.76 kcal Total: -73.64 -0.29 -73.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733237171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.689 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds