Wall clock time and date at job start Tue Mar 31 2020 22:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 120.00298 * 2 1 4 4 H 1.48505 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47088 * 300.00070 * 3 2 1 6 6 H 1.48501 * 109.47079 * 59.99640 * 3 2 1 7 7 C 1.38952 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00613 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99370 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99716 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99566 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99906 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47255 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00352 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47611 * 179.97438 * 14 13 12 16 16 C 1.53774 * 113.61886 * 175.00104 * 15 14 13 17 17 C 1.53780 * 87.08399 * 139.98378 * 16 15 14 18 18 N 1.46491 * 113.61732 * 89.11649 * 17 16 15 19 19 C 1.34774 * 120.00423 * 156.52963 * 18 17 16 20 20 O 1.21567 * 120.00001 * 0.02562 * 19 18 17 21 21 C 1.47750 * 120.00281 * 180.02562 * 19 18 17 22 22 C 1.39353 * 124.11592 * 180.02562 * 21 19 18 23 23 N 1.30096 * 112.14649 * 179.76676 * 22 21 19 24 24 S 1.55927 * 108.75140 * 0.23335 * 23 22 21 25 25 N 1.31491 * 124.11938 * 0.20709 * 21 19 18 26 26 C 1.53783 * 87.16902 * 334.52655 * 17 16 15 27 27 H 0.97006 * 119.99846 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00112 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.47608 * 59.99130 * 12 10 9 30 30 H 1.09005 * 109.46837 * 299.99685 * 12 10 9 31 31 H 1.00893 * 110.99988 * 303.95113 * 13 12 10 32 32 H 1.09009 * 109.46676 * 59.99819 * 14 13 12 33 33 H 1.09006 * 109.47273 * 300.00575 * 14 13 12 34 34 H 1.09002 * 112.84537 * 43.80315 * 15 14 13 35 35 H 1.09005 * 113.61442 * 25.43406 * 16 15 14 36 36 H 1.08999 * 113.61723 * 254.53079 * 16 15 14 37 37 H 1.08997 * 113.61785 * 219.93960 * 17 16 15 38 38 H 0.97000 * 119.99936 * 336.53004 * 18 17 16 39 39 H 1.08002 * 123.93051 * 0.04152 * 22 21 19 40 40 H 1.09002 * 113.61407 * 140.02245 * 26 17 16 41 41 H 1.09000 * 113.61672 * 270.92151 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.4979 -7.2708 0.0018 15 6 2.5227 -8.4069 0.0019 16 6 1.8932 -9.8045 0.1248 17 6 2.9318 -10.2768 -0.9062 18 7 4.1878 -10.7342 -0.3068 19 6 4.9834 -11.5893 -0.9793 20 8 4.6591 -11.9806 -2.0836 21 6 6.2499 -12.0510 -0.3745 22 6 7.1356 -12.9319 -0.9922 23 7 8.1784 -13.1770 -0.2539 24 16 8.0458 -12.3817 1.0807 25 7 6.6769 -11.6836 0.8137 26 6 2.9819 -8.8240 -1.4081 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6179 -4.9209 -0.8896 30 1 0.6160 -4.9204 0.8903 31 1 2.8336 -5.9125 -0.7791 32 1 0.8734 -7.3455 -0.8885 33 1 0.8725 -7.3450 0.8915 34 1 3.3445 -8.2354 0.6973 35 1 0.8659 -9.8539 -0.2362 36 1 2.0191 -10.2551 1.1093 37 1 2.5323 -10.9782 -1.6387 38 1 4.4468 -10.4218 0.5742 39 1 6.9771 -13.3579 -1.9719 40 1 3.9862 -8.4836 -1.6603 41 1 2.2518 -8.6059 -2.1874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733945394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:03 Heat of formation + Delta-G solvation = 11.041552 kcal Electronic energy + Delta-G solvation = -25250.817894 eV Core-core repulsion = 21293.599433 eV Total energy + Delta-G solvation = -3957.218460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61099 -40.22844 -38.61779 -38.11699 -35.28729 -34.35298 -33.83057 -33.05354 -31.21392 -28.78962 -27.82362 -26.03398 -25.63930 -24.17920 -23.37359 -21.98977 -21.00123 -19.98686 -19.48726 -19.08401 -18.19239 -17.87492 -16.61199 -16.46966 -16.12232 -15.85899 -15.54645 -15.25731 -14.88688 -14.57938 -14.40759 -14.05415 -13.97443 -13.63278 -13.10070 -12.98112 -12.72570 -12.66611 -12.32276 -11.94296 -11.76878 -11.68362 -11.56533 -11.52833 -11.49862 -11.08905 -10.99493 -10.68386 -10.53811 -10.34354 -10.31279 -10.21473 -9.74353 -9.51716 -9.38614 -8.45201 -8.04082 -7.95192 -6.41525 -3.82216 -0.07441 0.88784 1.05794 1.12620 2.59557 2.66507 3.16470 3.26944 3.34360 3.91611 3.96551 4.06000 4.22267 4.24441 4.32166 4.51526 4.60405 4.62363 4.81086 4.99035 5.13979 5.25528 5.30005 5.42557 5.45753 5.50038 5.57792 5.68398 5.78687 5.83904 5.88485 5.96298 5.99891 6.02159 6.26799 6.34309 7.03426 7.25147 7.55681 7.66116 7.69422 8.07186 8.61877 9.18419 9.54996 10.06528 10.76314 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.001679 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.926407 B =16672.810432 C =17688.811638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.069 3.931 15 C -0.107 4.107 16 C -0.138 4.138 17 C 0.118 3.882 18 N -0.689 5.689 19 C 0.608 3.392 20 O -0.522 6.522 21 C 0.010 3.990 22 C 0.091 3.909 23 N -0.579 5.579 24 S 0.728 5.272 25 N -0.547 5.547 26 C -0.150 4.150 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.349 0.651 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.412 0.588 39 H 0.215 0.785 40 H 0.074 0.926 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.254 -27.580 1.298 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.301 5.301 14 C -0.061 4.061 15 C -0.125 4.125 16 C -0.176 4.176 17 C 0.013 3.987 18 N -0.339 5.339 19 C 0.389 3.611 20 O -0.397 6.397 21 C -0.165 4.165 22 C -0.103 4.103 23 N -0.420 5.420 24 S 0.770 5.230 25 N -0.397 5.397 26 C -0.188 4.188 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.168 0.832 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.248 0.752 39 H 0.231 0.769 40 H 0.092 0.908 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.090 -27.597 2.833 29.193 hybrid contribution -1.560 0.993 -1.884 2.640 sum 7.530 -26.604 0.949 27.665 Atomic orbital electron populations 1.69620 1.05933 1.28026 1.50759 1.25265 0.95645 0.99729 0.97381 0.85799 0.79713 0.81132 0.77688 1.19224 1.20786 1.20744 1.19758 0.93401 0.82242 1.47411 0.87879 1.41879 1.09200 1.04624 1.64442 1.19838 0.88394 0.84759 0.84376 1.90520 1.13795 1.87089 1.55347 1.21670 0.94405 0.91051 1.01126 1.60069 1.18811 0.99954 1.51287 1.21947 0.95070 0.88753 1.00328 1.22692 0.99020 0.93251 0.97565 1.23335 0.98850 0.96072 0.99383 1.21933 0.83683 0.96322 0.96751 1.45474 1.21249 1.45680 1.21543 1.16709 0.81123 0.78876 0.84428 1.90846 1.72575 1.57381 1.18877 1.22493 1.00819 1.02251 0.90978 1.23794 0.87459 0.96543 1.02485 1.72278 1.28879 1.29033 1.11774 1.79175 1.08184 1.20049 1.15600 1.72433 1.18607 1.28342 1.20308 1.23582 1.02819 0.95025 0.97387 0.91943 0.77467 0.93962 0.89651 0.83209 0.95347 0.91009 0.88151 0.88382 0.90657 0.87673 0.75203 0.76857 0.90753 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 10 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 11 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.85 16 13 N -0.67 -10.66 6.13 -115.06 -0.70 -11.36 16 14 C 0.07 0.79 5.52 -3.83 -0.02 0.77 16 15 C -0.11 -1.01 3.79 -89.67 -0.34 -1.35 16 16 C -0.14 -1.00 7.38 -25.92 -0.19 -1.19 16 17 C 0.12 0.99 4.30 -67.12 -0.29 0.70 16 18 N -0.69 -5.94 5.26 -54.00 -0.28 -6.23 16 19 C 0.61 6.06 7.82 -12.37 -0.10 5.96 16 20 O -0.52 -6.43 16.42 5.31 0.09 -6.34 16 21 C 0.01 0.08 6.81 -83.71 -0.57 -0.49 16 22 C 0.09 0.70 11.22 -17.87 -0.20 0.50 16 23 N -0.58 -4.55 11.41 19.43 0.22 -4.33 16 24 S 0.73 4.33 23.69 -107.50 -2.55 1.78 16 25 N -0.55 -4.41 11.00 23.18 0.26 -4.16 16 26 C -0.15 -1.39 7.45 -25.78 -0.19 -1.58 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.35 5.82 8.43 -39.30 -0.33 5.49 16 32 H 0.03 0.30 7.85 -51.92 -0.41 -0.10 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.93 7.50 -51.93 -0.39 0.54 16 38 H 0.41 3.21 8.29 -40.82 -0.34 2.87 16 39 H 0.22 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -33.72 370.71 -9.00 -42.72 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -5.09 Total: 13.95 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -2.26 Total: 6.54 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: 0.15 Total: -64.43 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.17 Total: -22.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -2.55 Total: 1.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.72 -9.00 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733945394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.766 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds