Wall clock time and date at job start Tue Mar 31 2020 22:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 120.00298 * 2 1 4 4 H 1.48505 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47088 * 300.00070 * 3 2 1 6 6 H 1.48501 * 109.47079 * 59.99640 * 3 2 1 7 7 C 1.38952 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00613 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99370 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99716 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99566 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99906 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47255 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00352 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47611 * 179.97438 * 14 13 12 16 16 C 1.53774 * 113.61886 * 175.00104 * 15 14 13 17 17 C 1.53780 * 87.08399 * 139.98378 * 16 15 14 18 18 N 1.46491 * 113.61732 * 89.11649 * 17 16 15 19 19 C 1.34774 * 120.00423 * 156.52963 * 18 17 16 20 20 O 1.21567 * 120.00001 * 0.02562 * 19 18 17 21 21 C 1.47750 * 120.00281 * 180.02562 * 19 18 17 22 22 C 1.39353 * 124.11592 * 180.02562 * 21 19 18 23 23 N 1.30096 * 112.14649 * 179.76676 * 22 21 19 24 24 S 1.55927 * 108.75140 * 0.23335 * 23 22 21 25 25 N 1.31491 * 124.11938 * 0.20709 * 21 19 18 26 26 C 1.53783 * 87.16902 * 334.52655 * 17 16 15 27 27 H 0.97006 * 119.99846 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00112 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.47608 * 59.99130 * 12 10 9 30 30 H 1.09005 * 109.46837 * 299.99685 * 12 10 9 31 31 H 1.00893 * 110.99988 * 303.95113 * 13 12 10 32 32 H 1.09009 * 109.46676 * 59.99819 * 14 13 12 33 33 H 1.09006 * 109.47273 * 300.00575 * 14 13 12 34 34 H 1.09002 * 112.84537 * 43.80315 * 15 14 13 35 35 H 1.09005 * 113.61442 * 25.43406 * 16 15 14 36 36 H 1.08999 * 113.61723 * 254.53079 * 16 15 14 37 37 H 1.08997 * 113.61785 * 219.93960 * 17 16 15 38 38 H 0.97000 * 119.99936 * 336.53004 * 18 17 16 39 39 H 1.08002 * 123.93051 * 0.04152 * 22 21 19 40 40 H 1.09002 * 113.61407 * 140.02245 * 26 17 16 41 41 H 1.09000 * 113.61672 * 270.92151 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.4979 -7.2708 0.0018 15 6 2.5227 -8.4069 0.0019 16 6 1.8932 -9.8045 0.1248 17 6 2.9318 -10.2768 -0.9062 18 7 4.1878 -10.7342 -0.3068 19 6 4.9834 -11.5893 -0.9793 20 8 4.6591 -11.9806 -2.0836 21 6 6.2499 -12.0510 -0.3745 22 6 7.1356 -12.9319 -0.9922 23 7 8.1784 -13.1770 -0.2539 24 16 8.0458 -12.3817 1.0807 25 7 6.6769 -11.6836 0.8137 26 6 2.9819 -8.8240 -1.4081 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6179 -4.9209 -0.8896 30 1 0.6160 -4.9204 0.8903 31 1 2.8336 -5.9125 -0.7791 32 1 0.8734 -7.3455 -0.8885 33 1 0.8725 -7.3450 0.8915 34 1 3.3445 -8.2354 0.6973 35 1 0.8659 -9.8539 -0.2362 36 1 2.0191 -10.2551 1.1093 37 1 2.5323 -10.9782 -1.6387 38 1 4.4468 -10.4218 0.5742 39 1 6.9771 -13.3579 -1.9719 40 1 3.9862 -8.4836 -1.6603 41 1 2.2518 -8.6059 -2.1874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733945394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:03 Heat of formation + Delta-G solvation = -16.615477 kcal Electronic energy + Delta-G solvation = -25252.017192 eV Core-core repulsion = 21293.599433 eV Total energy + Delta-G solvation = -3958.417759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.24106 -40.94326 -40.13103 -39.25957 -36.55363 -35.79500 -35.00043 -33.85916 -33.25518 -29.91218 -28.60451 -27.25632 -26.63704 -25.47252 -24.33281 -22.85217 -21.67979 -21.13736 -20.55449 -20.06677 -19.84587 -18.87772 -17.88890 -17.24013 -17.10038 -16.96013 -16.53075 -16.40196 -16.11458 -15.75436 -15.70917 -15.37501 -15.10573 -14.93414 -14.35898 -14.15700 -13.69635 -13.51326 -13.34132 -13.29413 -13.08435 -12.84468 -12.59493 -12.52672 -12.41499 -12.29869 -12.12407 -12.12179 -11.83799 -11.52156 -11.45289 -11.27599 -11.06715 -10.35913 -10.32923 -10.06087 -10.02008 -9.28559 -8.47377 -5.96107 -0.68026 0.32743 0.42288 0.60183 1.36219 1.41507 1.55767 1.91709 1.96468 2.04848 2.28923 2.94337 3.19907 3.36768 3.50068 3.54569 3.65831 3.76526 3.90069 3.98751 4.01424 4.33765 4.45601 4.46563 4.50836 4.56466 4.68917 4.78647 4.83753 4.87124 4.91801 5.08373 5.18253 5.23320 5.31315 5.40598 5.61096 5.91316 6.14519 6.33585 6.44225 6.59875 6.94837 7.12217 7.55904 8.11395 8.70192 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.001679 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.926407 B =16672.810432 C =17688.811638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.685 5.685 14 C 0.070 3.930 15 C -0.105 4.105 16 C -0.118 4.118 17 C 0.118 3.882 18 N -0.684 5.684 19 C 0.607 3.393 20 O -0.552 6.552 21 C -0.007 4.007 22 C 0.088 3.912 23 N -0.600 5.600 24 S 0.794 5.206 25 N -0.564 5.564 26 C -0.150 4.150 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.341 0.659 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.225 0.775 40 H 0.055 0.945 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -28.212 1.958 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.512 6.512 12 C -0.068 4.068 13 N -0.317 5.317 14 C -0.058 4.058 15 C -0.124 4.124 16 C -0.157 4.157 17 C 0.013 3.987 18 N -0.334 5.334 19 C 0.388 3.612 20 O -0.429 6.429 21 C -0.180 4.180 22 C -0.103 4.103 23 N -0.442 5.442 24 S 0.836 5.164 25 N -0.416 5.416 26 C -0.189 4.189 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.159 0.841 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.253 0.747 39 H 0.241 0.759 40 H 0.073 0.927 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.420 -28.244 3.501 29.680 hybrid contribution -1.286 1.151 -2.016 2.654 sum 7.134 -27.093 1.484 28.056 Atomic orbital electron populations 1.69675 1.06792 1.29241 1.50346 1.26044 0.96575 1.02412 0.96284 0.84868 0.77989 0.77085 0.78359 1.19881 1.19558 1.19541 1.19701 0.92679 0.84090 1.49906 0.90427 1.41948 1.09348 1.04723 1.65064 1.20961 0.88273 0.86283 0.82100 1.90487 1.15981 1.88010 1.56685 1.21539 0.94067 0.88114 1.03055 1.60093 1.19132 1.01238 1.51240 1.22065 0.95481 0.86880 1.01410 1.22616 0.98544 0.93907 0.97315 1.23273 0.99125 0.93664 0.99604 1.21946 0.83948 0.95571 0.97255 1.45482 1.21202 1.45139 1.21557 1.16894 0.81508 0.78668 0.84104 1.90820 1.73427 1.58589 1.20106 1.22303 1.00847 1.03361 0.91494 1.23908 0.87197 0.96308 1.02928 1.72202 1.29206 1.29994 1.12836 1.78907 1.06036 1.17733 1.13764 1.72283 1.19951 1.29052 1.20298 1.23598 1.01967 0.95728 0.97609 0.91281 0.76927 0.91648 0.87727 0.84073 0.93846 0.90067 0.89440 0.86626 0.89553 0.87940 0.74700 0.75867 0.92652 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.65 13.05 21.66 0.28 -49.36 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.12 29.55 68.60 2.03 45.14 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.63 5.29 -306.98 -1.62 -31.25 16 10 C 0.44 20.94 7.82 87.65 0.69 21.62 16 11 O -0.63 -35.16 15.78 -3.06 -0.05 -35.20 16 12 C 0.06 2.19 6.17 85.56 0.53 2.72 16 13 N -0.69 -21.12 6.13 -517.94 -3.17 -24.29 16 14 C 0.07 1.45 5.52 86.30 0.48 1.93 16 15 C -0.11 -1.84 3.79 -10.18 -0.04 -1.88 16 16 C -0.12 -1.43 7.38 31.12 0.23 -1.20 16 17 C 0.12 1.85 4.30 45.52 0.20 2.04 16 18 N -0.68 -11.49 5.26 -443.02 -2.33 -13.82 16 19 C 0.61 12.11 7.82 86.76 0.68 12.79 16 20 O -0.55 -13.80 16.42 -3.93 -0.06 -13.86 16 21 C -0.01 -0.12 6.81 41.98 0.29 0.17 16 22 C 0.09 1.34 11.22 85.22 0.96 2.30 16 23 N -0.60 -8.86 11.41 -92.43 -1.05 -9.91 16 24 S 0.79 8.37 23.69 -56.49 -1.34 7.03 16 25 N -0.56 -8.63 11.00 -80.58 -0.89 -9.51 16 26 C -0.15 -2.69 7.45 31.21 0.23 -2.46 16 27 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 28 H 0.40 19.36 7.90 -92.71 -0.73 18.62 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 31 H 0.34 11.35 8.43 -89.70 -0.76 10.59 16 32 H 0.04 0.80 7.85 -2.38 -0.02 0.78 16 33 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.12 1.06 8.10 -2.38 -0.02 1.04 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.72 7.50 -2.39 -0.02 1.71 16 38 H 0.42 6.23 8.29 -92.71 -0.77 5.46 16 39 H 0.23 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.63 7.90 -2.39 -0.02 1.61 16 Total: -1.00 -73.27 370.71 -3.84 -77.11 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -1.14 Total: 38.49 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 5.51 Total: 19.44 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -8.78 Total: -138.15 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.11 Total: -49.06 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 8.37 SS G_CDS: -1.34 Total: 7.03 kcal Total: -73.27 -3.84 -77.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733945394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.493 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds