Wall clock time and date at job start Tue Mar 31 2020 23:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.99879 * 2 1 4 4 C 1.54329 * 109.88155 * 238.90607 * 2 1 3 5 5 H 1.09002 * 110.72032 * 336.75154 * 4 2 1 6 6 N 1.46901 * 110.86959 * 99.95566 * 4 2 1 7 7 C 1.46902 * 110.99746 * 202.45261 * 6 4 2 8 8 C 1.50697 * 109.47091 * 179.97438 * 7 6 4 9 9 O 1.21290 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.37093 * 119.99596 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00108 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00041 * 180.02562 * 11 10 8 14 14 N 1.31409 * 120.00029 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00247 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47027 * 90.00049 * 15 13 11 17 17 H 1.48496 * 109.47078 * 210.00374 * 15 13 11 18 18 H 1.48502 * 109.46828 * 330.00293 * 15 13 11 19 19 C 1.55162 * 102.94140 * 218.38819 * 4 2 1 20 20 C 1.54904 * 101.58121 * 35.50310 * 19 4 2 21 21 N 1.47024 * 109.88613 * 121.10036 * 2 1 3 22 22 C 1.34774 * 125.64350 * 298.32011 * 21 2 1 23 23 O 1.21605 * 120.00344 * 0.02562 * 22 21 2 24 24 C 1.47453 * 119.99952 * 180.02562 * 22 21 2 25 25 C 1.37979 * 124.15432 * 179.72816 * 24 22 21 26 26 S 1.72109 * 104.02978 * 179.89965 * 25 24 22 27 27 N 1.56397 * 96.15615 * 0.32653 * 26 25 24 28 28 N 1.27425 * 109.87605 * 359.79972 * 27 26 25 29 29 H 1.09002 * 109.47314 * 181.09908 * 1 2 3 30 30 H 1.09002 * 109.47104 * 301.09347 * 1 2 3 31 31 H 1.08997 * 109.47621 * 61.09090 * 1 2 3 32 32 H 1.00894 * 111.00335 * 78.50055 * 6 4 2 33 33 H 1.09003 * 109.47241 * 300.00265 * 7 6 4 34 34 H 1.09009 * 109.46890 * 59.99819 * 7 6 4 35 35 H 0.96993 * 119.99883 * 0.02562 * 10 8 7 36 36 H 0.96997 * 120.00672 * 179.97438 * 14 13 11 37 37 H 1.09000 * 110.99946 * 153.57687 * 19 4 2 38 38 H 1.09000 * 111.00168 * 277.42785 * 19 4 2 39 39 H 1.08998 * 110.36955 * 81.82737 * 20 19 4 40 40 H 1.09001 * 110.36825 * 204.15266 * 20 19 4 41 41 H 1.07994 * 127.98763 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3050 -1.4459 -1.6183 6 7 2.4559 0.1957 -2.2933 7 6 2.4439 -0.4484 -3.6135 8 6 2.8592 0.5499 -4.6633 9 8 3.1382 1.6860 -4.3431 10 7 2.9215 0.1799 -5.9579 11 6 3.2998 1.0879 -6.9128 12 1 3.5483 2.0995 -6.6276 13 6 3.3636 0.7067 -8.2474 14 7 3.0607 -0.5240 -8.5944 15 14 3.8797 1.9437 -9.5485 16 1 5.3537 1.8941 -9.7216 17 1 3.2186 1.6126 -10.8363 18 1 3.4771 3.3080 -9.1218 19 6 3.2876 -1.5142 -0.6925 20 6 2.8145 -1.8794 0.7366 21 7 2.0300 -0.7142 1.1838 22 6 1.8086 -0.3614 2.4656 23 8 1.1434 0.6247 2.7187 24 6 2.3729 -1.1710 3.5612 25 6 2.2049 -0.8862 4.9008 26 16 3.0618 -2.1435 5.7052 27 7 3.5412 -2.8757 4.4091 28 7 3.1101 -2.2609 3.3796 29 1 -0.3634 -1.0275 0.0197 30 1 -0.3633 0.5307 0.8800 31 1 -0.3634 0.4968 -0.8995 32 1 3.3608 0.5951 -2.0941 33 1 3.1391 -1.2879 -3.6146 34 1 1.4387 -0.8088 -3.8328 35 1 2.6987 -0.7287 -6.2138 36 1 3.1048 -0.7901 -9.5261 37 1 3.4851 -2.4110 -1.2798 38 1 4.1654 -0.8688 -0.6605 39 1 2.1886 -2.7715 0.7127 40 1 3.6716 -2.0338 1.3921 41 1 1.6598 -0.0653 5.3425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734392774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:32 Heat of formation + Delta-G solvation = 17.971918 kcal Electronic energy + Delta-G solvation = -26353.865783 eV Core-core repulsion = 22396.947846 eV Total energy + Delta-G solvation = -3956.917937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57854 -40.11210 -38.46634 -37.75715 -34.80116 -33.80945 -32.71484 -31.41335 -31.25864 -30.63469 -27.56772 -26.98075 -24.96391 -24.59578 -23.47646 -22.34753 -21.10537 -20.52210 -19.27595 -18.65185 -17.90742 -16.97805 -16.78233 -16.41239 -15.99893 -15.94439 -15.23675 -15.18469 -14.56059 -14.53037 -13.97729 -13.91323 -13.74434 -13.49032 -13.24625 -12.98150 -12.62585 -12.57772 -12.42456 -12.24721 -11.96203 -11.68655 -11.58058 -11.47030 -11.11849 -11.02929 -10.92076 -10.57938 -10.53907 -10.39851 -10.38931 -10.36451 -10.22003 -9.51502 -8.89003 -8.48762 -8.08829 -7.96636 -6.42196 -3.82966 -0.40876 0.44269 1.03235 1.06195 2.58488 2.80381 3.17810 3.26653 3.32742 3.37462 3.89597 4.01334 4.16793 4.23824 4.33231 4.41860 4.66195 4.81331 4.94673 5.08793 5.12115 5.19259 5.25928 5.38125 5.47792 5.61889 5.66572 5.75051 5.82243 5.89512 5.96236 6.03303 6.19581 6.22508 6.28306 7.00135 7.14520 7.19198 7.54977 7.57272 7.75960 8.05662 8.60491 9.17448 9.53511 10.04825 10.75468 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.001884 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.911814 B =14857.916096 C =15216.446854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.091 0.909 4 C 0.083 3.917 5 H 0.097 0.903 6 N -0.657 5.657 7 C 0.052 3.948 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.170 4.170 20 C 0.102 3.898 21 N -0.594 5.594 22 C 0.616 3.384 23 O -0.523 6.523 24 C -0.017 4.017 25 C -0.236 4.236 26 S 0.461 5.539 27 N -0.292 5.292 28 N -0.208 5.208 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.353 0.647 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -8.394 27.693 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.028 4.028 5 H 0.115 0.885 6 N -0.288 5.288 7 C -0.080 4.080 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.210 4.210 20 C -0.021 4.021 21 N -0.327 5.327 22 C 0.399 3.601 23 O -0.399 6.399 24 C -0.164 4.164 25 C -0.394 4.394 26 S 0.597 5.403 27 N -0.272 5.272 28 N -0.078 5.078 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.174 0.826 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.699 -8.417 28.255 29.531 hybrid contribution 0.124 0.468 -1.483 1.560 sum -1.575 -7.949 26.772 27.971 Atomic orbital electron populations 1.22076 0.94006 1.01954 1.03479 1.21613 0.94963 0.96928 0.82448 0.89075 1.22689 0.96447 0.92666 0.91042 0.88523 1.59935 1.36810 1.32192 0.99900 1.21690 1.01712 0.95544 0.89067 1.19789 0.84963 0.89184 0.83524 1.90533 1.54354 1.20764 1.81037 1.41857 1.59495 1.13642 1.04993 1.19702 1.42031 0.94906 0.86215 0.87911 1.25265 0.97514 0.96941 0.98253 1.69606 1.48797 1.17068 1.18828 0.85854 0.78557 0.80411 0.79456 1.20438 1.20928 1.19393 1.23644 0.99316 1.02227 0.95811 1.22548 0.96249 0.87824 0.95524 1.48351 1.51257 1.28624 1.04464 1.16202 0.80404 0.83316 0.80188 1.90849 1.39900 1.26261 1.82864 1.22675 1.02669 0.96284 0.94738 1.28894 1.06268 1.07633 0.96567 1.81570 1.31154 1.08525 1.19049 1.78696 1.23928 1.25556 0.99028 1.71709 1.09316 1.05796 1.21014 0.92881 0.91475 0.90524 0.82588 0.93591 0.89441 0.77453 0.91872 0.89398 0.90156 0.90930 0.88434 0.77394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.10 37.15 0.34 -1.54 16 2 C 0.14 1.77 3.22 -66.95 -0.22 1.56 16 3 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 4 C 0.08 0.98 2.77 -65.87 -0.18 0.80 16 5 H 0.10 1.06 7.57 -51.93 -0.39 0.67 16 6 N -0.66 -10.04 5.93 -106.04 -0.63 -10.67 16 7 C 0.05 0.87 6.04 -4.98 -0.03 0.84 16 8 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 9 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 10 N -0.56 -14.08 5.29 -10.96 -0.06 -14.13 16 11 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 12 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 15 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 C -0.17 -1.70 6.66 -24.58 -0.16 -1.86 16 20 C 0.10 1.01 6.08 -2.53 -0.02 0.99 16 21 N -0.59 -6.92 3.06 -164.27 -0.50 -7.42 16 22 C 0.62 7.62 7.63 -12.51 -0.10 7.52 16 23 O -0.52 -7.68 15.85 5.27 0.08 -7.60 16 24 C -0.02 -0.17 6.76 -83.78 -0.57 -0.73 16 25 C -0.24 -1.62 11.21 30.64 0.34 -1.27 16 26 S 0.46 2.36 23.38 -107.50 -2.51 -0.16 16 27 N -0.29 -2.62 12.49 60.35 0.75 -1.86 16 28 N -0.21 -2.12 8.51 32.74 0.28 -1.85 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.35 5.67 7.96 -39.29 -0.31 5.35 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.34 8.08 -51.92 -0.42 0.92 16 35 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.98 6.07 -51.93 -0.32 0.67 16 41 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -33.39 361.21 -7.26 -40.65 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.99 Total: 12.39 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.91 Total: 8.44 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.57 Total: -59.58 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.17 Total: -23.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.51 Total: -0.16 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.39 -7.26 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734392774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.620 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds