Wall clock time and date at job start Tue Mar 31 2020 23:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.99879 * 2 1 4 4 C 1.54329 * 109.88155 * 238.90607 * 2 1 3 5 5 H 1.09002 * 110.72032 * 336.75154 * 4 2 1 6 6 N 1.46901 * 110.86959 * 99.95566 * 4 2 1 7 7 C 1.46902 * 110.99746 * 202.45261 * 6 4 2 8 8 C 1.50697 * 109.47091 * 179.97438 * 7 6 4 9 9 O 1.21290 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.37093 * 119.99596 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00108 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00041 * 180.02562 * 11 10 8 14 14 N 1.31409 * 120.00029 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00247 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47027 * 90.00049 * 15 13 11 17 17 H 1.48496 * 109.47078 * 210.00374 * 15 13 11 18 18 H 1.48502 * 109.46828 * 330.00293 * 15 13 11 19 19 C 1.55162 * 102.94140 * 218.38819 * 4 2 1 20 20 C 1.54904 * 101.58121 * 35.50310 * 19 4 2 21 21 N 1.47024 * 109.88613 * 121.10036 * 2 1 3 22 22 C 1.34774 * 125.64350 * 298.32011 * 21 2 1 23 23 O 1.21605 * 120.00344 * 0.02562 * 22 21 2 24 24 C 1.47453 * 119.99952 * 180.02562 * 22 21 2 25 25 C 1.37979 * 124.15432 * 179.72816 * 24 22 21 26 26 S 1.72109 * 104.02978 * 179.89965 * 25 24 22 27 27 N 1.56397 * 96.15615 * 0.32653 * 26 25 24 28 28 N 1.27425 * 109.87605 * 359.79972 * 27 26 25 29 29 H 1.09002 * 109.47314 * 181.09908 * 1 2 3 30 30 H 1.09002 * 109.47104 * 301.09347 * 1 2 3 31 31 H 1.08997 * 109.47621 * 61.09090 * 1 2 3 32 32 H 1.00894 * 111.00335 * 78.50055 * 6 4 2 33 33 H 1.09003 * 109.47241 * 300.00265 * 7 6 4 34 34 H 1.09009 * 109.46890 * 59.99819 * 7 6 4 35 35 H 0.96993 * 119.99883 * 0.02562 * 10 8 7 36 36 H 0.96997 * 120.00672 * 179.97438 * 14 13 11 37 37 H 1.09000 * 110.99946 * 153.57687 * 19 4 2 38 38 H 1.09000 * 111.00168 * 277.42785 * 19 4 2 39 39 H 1.08998 * 110.36955 * 81.82737 * 20 19 4 40 40 H 1.09001 * 110.36825 * 204.15266 * 20 19 4 41 41 H 1.07994 * 127.98763 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3050 -1.4459 -1.6183 6 7 2.4559 0.1957 -2.2933 7 6 2.4439 -0.4484 -3.6135 8 6 2.8592 0.5499 -4.6633 9 8 3.1382 1.6860 -4.3431 10 7 2.9215 0.1799 -5.9579 11 6 3.2998 1.0879 -6.9128 12 1 3.5483 2.0995 -6.6276 13 6 3.3636 0.7067 -8.2474 14 7 3.0607 -0.5240 -8.5944 15 14 3.8797 1.9437 -9.5485 16 1 5.3537 1.8941 -9.7216 17 1 3.2186 1.6126 -10.8363 18 1 3.4771 3.3080 -9.1218 19 6 3.2876 -1.5142 -0.6925 20 6 2.8145 -1.8794 0.7366 21 7 2.0300 -0.7142 1.1838 22 6 1.8086 -0.3614 2.4656 23 8 1.1434 0.6247 2.7187 24 6 2.3729 -1.1710 3.5612 25 6 2.2049 -0.8862 4.9008 26 16 3.0618 -2.1435 5.7052 27 7 3.5412 -2.8757 4.4091 28 7 3.1101 -2.2609 3.3796 29 1 -0.3634 -1.0275 0.0197 30 1 -0.3633 0.5307 0.8800 31 1 -0.3634 0.4968 -0.8995 32 1 3.3608 0.5951 -2.0941 33 1 3.1391 -1.2879 -3.6146 34 1 1.4387 -0.8088 -3.8328 35 1 2.6987 -0.7287 -6.2138 36 1 3.1048 -0.7901 -9.5261 37 1 3.4851 -2.4110 -1.2798 38 1 4.1654 -0.8688 -0.6605 39 1 2.1886 -2.7715 0.7127 40 1 3.6716 -2.0338 1.3921 41 1 1.6598 -0.0653 5.3425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734392774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:31 Heat of formation + Delta-G solvation = -8.177021 kcal Electronic energy + Delta-G solvation = -26354.999686 eV Core-core repulsion = 22396.947846 eV Total energy + Delta-G solvation = -3958.051840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.28141 -40.99387 -40.09868 -38.93931 -36.22008 -35.57816 -33.45660 -33.23727 -32.28746 -31.67241 -28.48103 -28.14131 -26.47499 -25.50955 -24.76496 -23.14822 -21.92383 -21.39139 -20.98463 -19.90580 -19.46585 -17.89710 -17.85134 -17.31972 -17.13437 -16.84800 -16.58152 -16.31474 -15.97920 -15.85237 -15.41918 -15.24879 -14.92508 -14.47321 -14.26261 -14.08992 -13.86842 -13.53741 -13.47569 -13.34822 -13.11137 -13.05906 -12.91384 -12.68115 -12.57082 -12.40384 -12.12249 -12.02906 -11.81374 -11.49640 -11.37476 -11.19072 -11.16706 -10.89681 -10.33588 -9.99858 -9.81431 -9.30291 -8.45517 -5.93784 -0.95453 -0.06825 0.29212 0.52339 1.38593 1.42554 1.55005 1.73143 1.95295 2.07469 2.30146 2.67166 2.89146 3.21991 3.38517 3.47927 3.59766 3.67770 3.83376 4.02059 4.20181 4.25039 4.32637 4.34760 4.41615 4.52114 4.57294 4.64748 4.71954 4.87561 5.00044 5.02961 5.08116 5.24106 5.28834 5.42478 5.89843 6.10527 6.25620 6.33405 6.41482 6.61947 6.86591 7.14423 7.58437 8.14083 8.71709 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.001884 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.911814 B =14857.916096 C =15216.446854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.143 3.857 3 H 0.065 0.935 4 C 0.090 3.910 5 H 0.114 0.886 6 N -0.672 5.672 7 C 0.069 3.931 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.275 1.275 19 C -0.162 4.162 20 C 0.107 3.893 21 N -0.595 5.595 22 C 0.611 3.389 23 O -0.557 6.557 24 C -0.043 4.043 25 C -0.238 4.238 26 S 0.566 5.434 27 N -0.332 5.332 28 N -0.226 5.226 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.347 0.653 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -10.120 28.883 30.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.021 4.021 5 H 0.132 0.868 6 N -0.303 5.303 7 C -0.063 4.063 8 C 0.225 3.775 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.200 1.200 19 C -0.201 4.201 20 C -0.015 4.015 21 N -0.327 5.327 22 C 0.396 3.604 23 O -0.435 6.435 24 C -0.190 4.190 25 C -0.395 4.395 26 S 0.701 5.299 27 N -0.312 5.312 28 N -0.096 5.096 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.592 -10.198 29.445 31.202 hybrid contribution 0.098 1.006 -1.633 1.921 sum -1.495 -9.193 27.812 29.330 Atomic orbital electron populations 1.21986 0.93695 1.02530 1.02495 1.21499 0.95178 0.95953 0.83394 0.91708 1.22674 0.97603 0.92172 0.89688 0.86838 1.59883 1.36616 1.33635 1.00196 1.21547 1.03275 0.94020 0.87486 1.20931 0.82906 0.89739 0.83966 1.90504 1.55736 1.23172 1.81774 1.41917 1.60104 1.13491 1.05494 1.19641 1.44183 0.94705 0.87714 0.90465 1.26011 0.96988 0.98752 0.99531 1.69660 1.48705 1.18044 1.19581 0.84951 0.78510 0.77850 0.77171 1.19631 1.19558 1.19957 1.23601 0.98047 1.02533 0.95957 1.22601 0.96261 0.87480 0.95185 1.48411 1.51181 1.28911 1.04210 1.16556 0.79929 0.83138 0.80782 1.90817 1.41499 1.27756 1.83468 1.22443 1.04408 0.97114 0.95073 1.29261 1.05731 1.08540 0.95984 1.81200 1.27826 1.05429 1.15449 1.78361 1.25325 1.27051 1.00512 1.71733 1.09838 1.05990 1.22001 0.91423 0.92951 0.90983 0.83359 0.90707 0.87351 0.76855 0.91317 0.87387 0.90874 0.89660 0.88441 0.75683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.10 71.98 0.65 -2.89 16 2 C 0.14 3.55 3.22 45.34 0.15 3.70 16 3 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16 4 C 0.09 1.98 2.77 46.11 0.13 2.11 16 5 H 0.11 2.18 7.57 -2.39 -0.02 2.16 16 6 N -0.67 -20.13 5.93 -489.41 -2.90 -23.03 16 7 C 0.07 2.19 6.04 85.56 0.52 2.71 16 8 C 0.44 20.33 7.82 87.65 0.69 21.02 16 9 O -0.63 -34.51 15.78 -3.06 -0.05 -34.56 16 10 N -0.57 -28.91 5.29 -306.98 -1.62 -30.53 16 11 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 12 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 13 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 14 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 15 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 C -0.16 -2.95 6.66 31.99 0.21 -2.74 16 20 C 0.11 1.98 6.08 86.85 0.53 2.51 16 21 N -0.60 -13.74 3.06 -791.88 -2.43 -16.16 16 22 C 0.61 15.24 7.63 86.67 0.66 15.90 16 23 O -0.56 -16.84 15.85 -4.05 -0.06 -16.90 16 24 C -0.04 -0.83 6.76 41.36 0.28 -0.55 16 25 C -0.24 -2.86 11.21 67.76 0.76 -2.10 16 26 S 0.57 4.27 23.38 -56.49 -1.32 2.95 16 27 N -0.33 -5.38 12.49 37.02 0.46 -4.92 16 28 N -0.23 -4.39 8.51 -50.34 -0.43 -4.82 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.40 6.90 -2.39 -0.02 1.38 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.35 11.19 7.96 -89.70 -0.71 10.48 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 3.06 8.08 -2.38 -0.02 3.04 16 35 H 0.40 18.88 7.90 -92.71 -0.73 18.14 16 36 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.47 7.79 -2.39 -0.02 1.45 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.87 6.07 -2.39 -0.01 1.86 16 41 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -74.39 361.21 -0.53 -74.92 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.34 Total: 35.54 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 5.85 Total: 21.41 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -6.63 Total: -128.36 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.11 Total: -51.46 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.32 Total: 2.95 kcal Total: -74.39 -0.53 -74.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734392774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.744 kcal (2) G-P(sol) polarization free energy of solvation -74.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds