Wall clock time and date at job start Tue Mar 31 2020 23:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.87701 * 2 1 4 4 C 1.54321 * 109.88596 * 121.01777 * 2 1 3 5 5 H 1.09002 * 110.71668 * 23.22457 * 4 2 1 6 6 N 1.46895 * 110.72216 * 260.13274 * 4 2 1 7 7 C 1.46893 * 111.00318 * 157.43754 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55157 * 103.10301 * 141.67388 * 4 2 1 20 20 C 1.55116 * 101.48512 * 324.71781 * 19 4 2 21 21 N 1.47026 * 110.01004 * 238.90454 * 2 1 3 22 22 C 1.34776 * 125.64920 * 61.60070 * 21 2 1 23 23 O 1.21605 * 120.00061 * 0.02562 * 22 21 2 24 24 C 1.47458 * 119.99794 * 180.02562 * 22 21 2 25 25 C 1.37981 * 124.15182 * 180.02562 * 24 22 21 26 26 S 1.72099 * 104.03100 * 179.97438 * 25 24 22 27 27 N 1.56400 * 96.15480 * 0.02562 * 26 25 24 28 28 N 1.27424 * 109.87608 * 359.72013 * 27 26 25 29 29 H 1.08994 * 109.46628 * 298.98423 * 1 2 3 30 30 H 1.09003 * 109.47044 * 58.98049 * 1 2 3 31 31 H 1.09001 * 109.46887 * 178.97921 * 1 2 3 32 32 H 1.00908 * 110.99391 * 281.38916 * 6 4 2 33 33 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 34 34 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 35 35 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 36 36 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 37 37 H 1.09000 * 111.00261 * 82.66761 * 19 4 2 38 38 H 1.09002 * 111.00076 * 206.51382 * 19 4 2 39 39 H 1.09001 * 110.21229 * 277.95737 * 20 19 4 40 40 H 1.09002 * 110.51269 * 155.75313 * 20 19 4 41 41 H 1.08002 * 127.98246 * 359.96628 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0550 -0.7478 1.2437 5 1 1.3051 -1.4434 1.6204 6 7 2.4532 0.2016 2.2914 7 6 2.4391 -0.4374 3.6140 8 6 2.8527 0.5649 4.6607 9 8 3.1322 1.6998 4.3366 10 7 2.9130 0.1999 5.9567 11 6 3.2888 1.1119 6.9088 12 1 3.5368 2.1226 6.6204 13 6 3.3504 0.7357 8.2451 14 7 3.0481 -0.4940 8.5961 15 14 3.8631 1.9781 9.5424 16 1 3.8483 1.3323 10.8795 17 1 5.2326 2.4688 9.2441 18 1 2.9153 3.1212 9.5349 19 6 3.2894 -1.5136 0.6987 20 6 2.8196 -1.8769 -0.7343 21 7 2.0331 -0.7135 -1.1830 22 6 1.8125 -0.3618 -2.4652 23 8 1.1462 0.6232 -2.7195 24 6 2.3790 -1.1714 -3.5597 25 6 2.2079 -0.8904 -4.8997 26 16 3.0724 -2.1434 -5.7025 27 7 3.5500 -2.8752 -4.4054 28 7 3.1212 -2.2576 -3.3767 29 1 -0.3632 0.4980 0.8989 30 1 -0.3633 0.5296 -0.8807 31 1 -0.3633 -1.0275 -0.0183 32 1 3.3582 0.6010 2.0924 33 1 3.1351 -1.2763 3.6196 34 1 1.4339 -0.7978 3.8328 35 1 2.6899 -0.7078 6.2158 36 1 3.0916 -0.7567 9.5289 37 1 4.1675 -0.8685 0.6689 38 1 3.4847 -2.4096 1.2878 39 1 2.1956 -2.7704 -0.7108 40 1 3.6768 -2.0310 -1.3898 41 1 1.6583 -0.0730 -5.3425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734392809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:35 Heat of formation + Delta-G solvation = 17.987442 kcal Electronic energy + Delta-G solvation = -26353.619654 eV Core-core repulsion = 22396.702390 eV Total energy + Delta-G solvation = -3956.917264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57788 -40.10528 -38.46518 -37.75266 -34.79967 -33.80786 -32.71374 -31.40816 -31.25689 -30.63091 -27.56850 -26.97727 -24.96109 -24.59754 -23.47545 -22.35099 -21.10465 -20.52040 -19.27426 -18.65117 -17.90608 -16.97429 -16.77802 -16.41645 -15.99612 -15.94192 -15.23295 -15.18612 -14.56114 -14.52719 -13.97721 -13.91286 -13.74127 -13.49098 -13.24380 -12.98276 -12.62719 -12.57783 -12.42154 -12.24364 -11.95517 -11.68759 -11.57908 -11.46640 -11.11328 -11.01325 -10.91995 -10.57405 -10.53982 -10.44329 -10.39342 -10.36679 -10.21452 -9.50379 -8.88813 -8.48641 -8.08725 -7.96505 -6.42006 -3.82840 -0.40860 0.44299 1.03267 1.06193 2.58505 2.80396 3.20306 3.26062 3.30534 3.37512 3.89787 4.01608 4.16859 4.23850 4.33163 4.41675 4.66252 4.81239 4.94715 5.08827 5.12188 5.19170 5.25973 5.38420 5.47938 5.62032 5.66645 5.75156 5.82399 5.89498 5.96377 6.03461 6.19768 6.22547 6.28363 7.00169 7.14681 7.19317 7.54918 7.57306 7.75985 8.05611 8.60636 9.17457 9.53609 10.04973 10.75562 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032794 B = 0.001884 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.612938 B =14856.678052 C =15213.242531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.091 0.909 4 C 0.083 3.917 5 H 0.097 0.903 6 N -0.657 5.657 7 C 0.052 3.948 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.285 1.285 17 H -0.274 1.274 18 H -0.273 1.273 19 C -0.170 4.170 20 C 0.102 3.898 21 N -0.594 5.594 22 C 0.616 3.384 23 O -0.523 6.523 24 C -0.017 4.017 25 C -0.237 4.237 26 S 0.461 5.539 27 N -0.292 5.292 28 N -0.208 5.208 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.353 0.647 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 -8.482 -27.649 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.029 4.029 5 H 0.115 0.885 6 N -0.288 5.288 7 C -0.080 4.080 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.210 4.210 20 C -0.022 4.022 21 N -0.327 5.327 22 C 0.399 3.601 23 O -0.399 6.399 24 C -0.164 4.164 25 C -0.394 4.394 26 S 0.597 5.403 27 N -0.272 5.272 28 N -0.078 5.078 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.174 0.826 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.226 0.774 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.633 -8.507 -28.210 29.511 hybrid contribution 0.105 0.484 1.481 1.562 sum -1.528 -8.023 -26.729 27.949 Atomic orbital electron populations 1.22077 0.94003 1.01950 1.03480 1.21614 0.94952 0.96949 0.82445 0.89084 1.22690 0.96454 0.92642 0.91077 0.88529 1.59946 1.36868 1.32127 0.99907 1.21689 1.01704 0.95571 0.89049 1.19788 0.84980 0.89197 0.83514 1.90532 1.54350 1.20905 1.80925 1.41850 1.59521 1.13637 1.04944 1.19654 1.42227 0.94829 0.86221 0.87964 1.25266 0.97493 0.96957 0.98230 1.69603 1.48753 1.17184 1.18764 0.85913 0.79303 0.79947 0.79030 1.20992 1.19921 1.19875 1.23672 0.99291 1.02226 0.95761 1.22581 0.96253 0.87845 0.95492 1.48342 1.51113 1.28761 1.04461 1.16203 0.80418 0.83304 0.80183 1.90849 1.39884 1.26306 1.82828 1.22674 1.02528 0.96436 0.94725 1.28895 1.06195 1.07707 0.96576 1.81569 1.30946 1.08719 1.19048 1.78697 1.24099 1.25386 0.99029 1.71703 1.09338 1.05746 1.21049 0.90513 0.91477 0.92889 0.82588 0.93604 0.89442 0.77448 0.91819 0.90168 0.89370 0.90975 0.88407 0.77392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.10 37.16 0.34 -1.54 16 2 C 0.14 1.77 3.21 -66.95 -0.21 1.56 16 3 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 4 C 0.08 0.98 2.77 -65.88 -0.18 0.80 16 5 H 0.10 1.06 7.57 -51.93 -0.39 0.67 16 6 N -0.66 -10.05 5.92 -106.06 -0.63 -10.68 16 7 C 0.05 0.87 6.04 -4.98 -0.03 0.84 16 8 C 0.44 10.17 7.82 -10.98 -0.09 10.09 16 9 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 10 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 11 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 12 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 15 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C -0.17 -1.70 6.68 -24.47 -0.16 -1.86 16 20 C 0.10 1.00 6.08 -2.42 -0.01 0.99 16 21 N -0.59 -6.92 3.07 -164.12 -0.50 -7.43 16 22 C 0.62 7.63 7.64 -12.51 -0.10 7.53 16 23 O -0.52 -7.69 15.85 5.27 0.08 -7.61 16 24 C -0.02 -0.17 6.76 -83.78 -0.57 -0.73 16 25 C -0.24 -1.62 11.21 30.64 0.34 -1.28 16 26 S 0.46 2.36 23.38 -107.50 -2.51 -0.16 16 27 N -0.29 -2.62 12.49 60.35 0.75 -1.87 16 28 N -0.21 -2.13 8.51 32.74 0.28 -1.85 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.87 6.91 -51.93 -0.36 0.51 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.35 5.67 7.95 -39.29 -0.31 5.36 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 35 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.99 6.06 -51.93 -0.31 0.67 16 41 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -33.36 361.22 -7.26 -40.62 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.99 Total: 12.44 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.91 Total: 8.43 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.57 Total: -59.60 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.17 Total: -23.18 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.51 Total: -0.16 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.36 -7.26 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734392809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.607 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds