Wall clock time and date at job start Tue Mar 31 2020 23:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.87701 * 2 1 4 4 C 1.54321 * 109.88596 * 121.01777 * 2 1 3 5 5 H 1.09002 * 110.71668 * 23.22457 * 4 2 1 6 6 N 1.46895 * 110.72216 * 260.13274 * 4 2 1 7 7 C 1.46893 * 111.00318 * 157.43754 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55157 * 103.10301 * 141.67388 * 4 2 1 20 20 C 1.55116 * 101.48512 * 324.71781 * 19 4 2 21 21 N 1.47026 * 110.01004 * 238.90454 * 2 1 3 22 22 C 1.34776 * 125.64920 * 61.60070 * 21 2 1 23 23 O 1.21605 * 120.00061 * 0.02562 * 22 21 2 24 24 C 1.47458 * 119.99794 * 180.02562 * 22 21 2 25 25 C 1.37981 * 124.15182 * 180.02562 * 24 22 21 26 26 S 1.72099 * 104.03100 * 179.97438 * 25 24 22 27 27 N 1.56400 * 96.15480 * 0.02562 * 26 25 24 28 28 N 1.27424 * 109.87608 * 359.72013 * 27 26 25 29 29 H 1.08994 * 109.46628 * 298.98423 * 1 2 3 30 30 H 1.09003 * 109.47044 * 58.98049 * 1 2 3 31 31 H 1.09001 * 109.46887 * 178.97921 * 1 2 3 32 32 H 1.00908 * 110.99391 * 281.38916 * 6 4 2 33 33 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 34 34 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 35 35 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 36 36 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 37 37 H 1.09000 * 111.00261 * 82.66761 * 19 4 2 38 38 H 1.09002 * 111.00076 * 206.51382 * 19 4 2 39 39 H 1.09001 * 110.21229 * 277.95737 * 20 19 4 40 40 H 1.09002 * 110.51269 * 155.75313 * 20 19 4 41 41 H 1.08002 * 127.98246 * 359.96628 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0550 -0.7478 1.2437 5 1 1.3051 -1.4434 1.6204 6 7 2.4532 0.2016 2.2914 7 6 2.4391 -0.4374 3.6140 8 6 2.8527 0.5649 4.6607 9 8 3.1322 1.6998 4.3366 10 7 2.9130 0.1999 5.9567 11 6 3.2888 1.1119 6.9088 12 1 3.5368 2.1226 6.6204 13 6 3.3504 0.7357 8.2451 14 7 3.0481 -0.4940 8.5961 15 14 3.8631 1.9781 9.5424 16 1 3.8483 1.3323 10.8795 17 1 5.2326 2.4688 9.2441 18 1 2.9153 3.1212 9.5349 19 6 3.2894 -1.5136 0.6987 20 6 2.8196 -1.8769 -0.7343 21 7 2.0331 -0.7135 -1.1830 22 6 1.8125 -0.3618 -2.4652 23 8 1.1462 0.6232 -2.7195 24 6 2.3790 -1.1714 -3.5597 25 6 2.2079 -0.8904 -4.8997 26 16 3.0724 -2.1434 -5.7025 27 7 3.5500 -2.8752 -4.4054 28 7 3.1212 -2.2576 -3.3767 29 1 -0.3632 0.4980 0.8989 30 1 -0.3633 0.5296 -0.8807 31 1 -0.3633 -1.0275 -0.0183 32 1 3.3582 0.6010 2.0924 33 1 3.1351 -1.2763 3.6196 34 1 1.4339 -0.7978 3.8328 35 1 2.6899 -0.7078 6.2158 36 1 3.0916 -0.7567 9.5289 37 1 4.1675 -0.8685 0.6689 38 1 3.4847 -2.4096 1.2878 39 1 2.1956 -2.7704 -0.7108 40 1 3.6768 -2.0310 -1.3898 41 1 1.6583 -0.0730 -5.3425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734392809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:34 Heat of formation + Delta-G solvation = -8.133330 kcal Electronic energy + Delta-G solvation = -26354.752335 eV Core-core repulsion = 22396.702390 eV Total energy + Delta-G solvation = -3958.049946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.28063 -40.98875 -40.09796 -38.93586 -36.21797 -35.57715 -33.45600 -33.23607 -32.28274 -31.66943 -28.47788 -28.14242 -26.47234 -25.51105 -24.76476 -23.15272 -21.92291 -21.39126 -20.98301 -19.90419 -19.46590 -17.89465 -17.84771 -17.31695 -17.13905 -16.84591 -16.57750 -16.31342 -15.98071 -15.85510 -15.41883 -15.24589 -14.92206 -14.47199 -14.26364 -14.08587 -13.87176 -13.53587 -13.47000 -13.34654 -13.10982 -13.05876 -12.90934 -12.67638 -12.57196 -12.41834 -12.12200 -12.02989 -11.81414 -11.49035 -11.37545 -11.19442 -11.16118 -10.89910 -10.33470 -9.99897 -9.81335 -9.30283 -8.45272 -5.93640 -0.95461 -0.06820 0.29176 0.52320 1.40581 1.42589 1.53157 1.73107 1.95244 2.07695 2.30269 2.67173 2.89318 3.22187 3.38654 3.47648 3.59676 3.67713 3.83329 4.01929 4.19921 4.25051 4.32594 4.34720 4.41791 4.52217 4.57334 4.64764 4.71940 4.87640 5.00154 5.03000 5.07995 5.24089 5.28842 5.42360 5.89896 6.10561 6.25627 6.33329 6.41485 6.62058 6.86541 7.14389 7.58529 8.14167 8.71689 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032794 B = 0.001884 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.612938 B =14856.678052 C =15213.242531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.143 3.857 3 H 0.065 0.935 4 C 0.089 3.911 5 H 0.114 0.886 6 N -0.672 5.672 7 C 0.069 3.931 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.270 1.270 17 H -0.272 1.272 18 H -0.273 1.273 19 C -0.161 4.161 20 C 0.107 3.893 21 N -0.595 5.595 22 C 0.611 3.389 23 O -0.557 6.557 24 C -0.043 4.043 25 C -0.239 4.239 26 S 0.566 5.434 27 N -0.332 5.332 28 N -0.226 5.226 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.347 0.653 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 -10.187 -28.850 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.022 4.022 5 H 0.132 0.868 6 N -0.303 5.303 7 C -0.063 4.063 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.195 1.195 17 H -0.197 1.197 18 H -0.199 1.199 19 C -0.201 4.201 20 C -0.016 4.016 21 N -0.327 5.327 22 C 0.396 3.604 23 O -0.435 6.435 24 C -0.190 4.190 25 C -0.395 4.395 26 S 0.701 5.299 27 N -0.313 5.313 28 N -0.096 5.096 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.536 -10.266 -29.412 31.191 hybrid contribution 0.080 1.015 1.632 1.924 sum -1.456 -9.251 -27.780 29.316 Atomic orbital electron populations 1.21987 0.93691 1.02528 1.02494 1.21500 0.95169 0.95966 0.83395 0.91728 1.22676 0.97617 0.92141 0.89720 0.86844 1.59895 1.36671 1.33582 1.00188 1.21547 1.03272 0.94023 0.87489 1.20929 0.82921 0.89769 0.83944 1.90503 1.55726 1.23308 1.81659 1.41912 1.60132 1.13482 1.05452 1.19610 1.44356 0.94668 0.87710 0.90446 1.26015 0.96962 0.98791 0.99500 1.69659 1.48665 1.18172 1.19471 0.85013 0.78759 0.77775 0.76939 1.19479 1.19737 1.19876 1.23631 0.98015 1.02534 0.95908 1.22633 0.96263 0.87503 0.95158 1.48402 1.51039 1.29045 1.04210 1.16557 0.79944 0.83125 0.80775 1.90817 1.41483 1.27801 1.83433 1.22441 1.04259 0.97273 0.95063 1.29262 1.05682 1.08591 0.95990 1.81198 1.27620 1.05618 1.15446 1.78361 1.25502 1.26870 1.00517 1.71728 1.09860 1.05942 1.22037 0.90976 0.92952 0.91428 0.83362 0.90727 0.87353 0.76855 0.91310 0.90886 0.87351 0.89708 0.88413 0.75680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.10 71.98 0.66 -2.89 16 2 C 0.14 3.55 3.21 45.34 0.15 3.70 16 3 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16 4 C 0.09 1.98 2.77 46.10 0.13 2.11 16 5 H 0.11 2.18 7.57 -2.39 -0.02 2.16 16 6 N -0.67 -20.14 5.92 -489.46 -2.90 -23.04 16 7 C 0.07 2.19 6.04 85.56 0.52 2.71 16 8 C 0.44 20.33 7.82 87.66 0.69 21.01 16 9 O -0.63 -34.50 15.78 -3.05 -0.05 -34.55 16 10 N -0.57 -28.90 5.29 -306.98 -1.62 -30.53 16 11 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 12 H 0.08 4.68 7.16 -2.92 -0.02 4.66 16 13 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 14 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 15 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 C -0.16 -2.94 6.68 32.06 0.21 -2.73 16 20 C 0.11 1.98 6.08 86.93 0.53 2.51 16 21 N -0.60 -13.75 3.07 -791.42 -2.43 -16.18 16 22 C 0.61 15.26 7.64 86.67 0.66 15.92 16 23 O -0.56 -16.85 15.85 -4.05 -0.06 -16.91 16 24 C -0.04 -0.83 6.76 41.36 0.28 -0.55 16 25 C -0.24 -2.86 11.21 67.76 0.76 -2.10 16 26 S 0.57 4.27 23.38 -56.49 -1.32 2.95 16 27 N -0.33 -5.38 12.49 37.02 0.46 -4.92 16 28 N -0.23 -4.39 8.51 -50.34 -0.43 -4.82 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.40 6.91 -2.39 -0.02 1.38 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.35 11.20 7.95 -89.69 -0.71 10.48 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 3.06 8.08 -2.39 -0.02 3.04 16 35 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 36 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.07 1.46 7.79 -2.39 -0.02 1.45 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 1.88 6.06 -2.39 -0.01 1.87 16 41 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -74.32 361.22 -0.53 -74.84 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -0.34 Total: 35.69 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 5.86 Total: 21.39 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -6.63 Total: -128.39 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.11 Total: -51.46 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.32 Total: 2.95 kcal Total: -74.32 -0.53 -74.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734392809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.711 kcal (2) G-P(sol) polarization free energy of solvation -74.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds