Wall clock time and date at job start Tue Mar 31 2020 23:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.00036 * 2 1 4 4 C 1.54325 * 109.88348 * 238.89929 * 2 1 3 5 5 H 1.09000 * 110.87131 * 144.34115 * 4 2 1 6 6 N 1.46901 * 110.71849 * 21.13892 * 4 2 1 7 7 C 1.46898 * 111.00189 * 160.02256 * 6 4 2 8 8 C 1.50696 * 109.47176 * 180.02562 * 7 6 4 9 9 O 1.21288 * 120.00279 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99735 * 179.97438 * 8 7 6 11 11 C 1.37105 * 119.99904 * 179.97438 * 10 8 7 12 12 H 1.07991 * 119.99780 * 0.02562 * 11 10 8 13 13 C 1.38954 * 119.99815 * 179.72596 * 11 10 8 14 14 N 1.31414 * 119.99692 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00158 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46896 * 89.99806 * 15 13 11 17 17 H 1.48499 * 109.47039 * 209.99966 * 15 13 11 18 18 H 1.48502 * 109.46906 * 329.99872 * 15 13 11 19 19 C 1.55155 * 102.94472 * 262.77681 * 4 2 1 20 20 C 1.54909 * 101.58170 * 324.49745 * 19 4 2 21 21 N 1.47029 * 109.88017 * 121.09467 * 2 1 3 22 22 C 1.34776 * 125.64588 * 300.51510 * 21 2 1 23 23 O 1.21601 * 120.00426 * 359.97438 * 22 21 2 24 24 C 1.47450 * 119.99754 * 179.97438 * 22 21 2 25 25 C 1.37982 * 124.15473 * 180.02562 * 24 22 21 26 26 S 1.72104 * 104.03192 * 180.02562 * 25 24 22 27 27 N 1.56403 * 96.15749 * 359.97438 * 26 25 24 28 28 N 1.27426 * 109.87116 * 359.72890 * 27 26 25 29 29 H 1.08998 * 109.47284 * 181.09837 * 1 2 3 30 30 H 1.09003 * 109.47046 * 301.09942 * 1 2 3 31 31 H 1.08996 * 109.47021 * 61.09826 * 1 2 3 32 32 H 1.00907 * 110.99760 * 36.07056 * 6 4 2 33 33 H 1.09000 * 109.46741 * 60.00112 * 7 6 4 34 34 H 1.09002 * 109.46898 * 300.00102 * 7 6 4 35 35 H 0.97005 * 120.00189 * 0.02562 * 10 8 7 36 36 H 0.96995 * 119.99830 * 180.02562 * 14 13 11 37 37 H 1.09009 * 111.00227 * 82.57023 * 19 4 2 38 38 H 1.08994 * 111.00705 * 206.38265 * 19 4 2 39 39 H 1.09009 * 110.36755 * 155.84673 * 20 19 4 40 40 H 1.08997 * 110.36772 * 278.06054 * 20 19 4 41 41 H 1.08000 * 127.98184 * 359.96336 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9651 -0.2845 -1.6210 6 7 1.0265 -0.8029 -2.2903 7 6 1.6268 -1.0698 -3.6042 8 6 0.5438 -1.1166 -4.6511 9 8 -0.6141 -0.9441 -4.3340 10 7 0.8621 -1.3491 -5.9399 11 6 -0.1232 -1.3922 -6.8923 12 1 -1.1543 -1.2394 -6.6098 13 6 0.2056 -1.6263 -8.2220 14 7 -0.7388 -1.6671 -9.1349 15 14 1.9899 -1.8830 -8.7117 16 1 2.3215 -3.3284 -8.6339 17 1 2.1958 -1.4020 -10.1015 18 1 2.8707 -1.1226 -7.7891 19 6 2.3519 -2.1696 -0.6923 20 6 2.8568 -1.8498 0.7369 21 7 2.0300 -0.7141 1.1840 22 6 1.7741 -0.3853 2.4657 23 8 1.0750 0.5770 2.7187 24 6 2.3419 -1.1924 3.5613 25 6 2.1357 -0.9342 4.9010 26 16 3.0202 -2.1721 5.7055 27 7 3.5452 -2.8725 4.4094 28 7 3.1099 -2.2608 3.3798 29 1 -0.3634 -1.0274 0.0197 30 1 -0.3633 0.5308 0.8800 31 1 -0.3633 0.4967 -0.8996 32 1 0.4830 0.0471 -2.3070 33 1 2.1485 -2.0265 -3.5776 34 1 2.3337 -0.2770 -3.8484 35 1 1.7882 -1.4868 -6.1936 36 1 -0.5094 -1.8308 -10.0630 37 1 1.4451 -2.7737 -0.6602 38 1 3.1265 -2.6622 -1.2798 39 1 2.7088 -2.7081 1.3924 40 1 3.9096 -1.5686 0.7132 41 1 1.5543 -0.1384 5.3427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734392811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:38 Heat of formation + Delta-G solvation = 32.287426 kcal Electronic energy + Delta-G solvation = -26528.805296 eV Core-core repulsion = 22572.508126 eV Total energy + Delta-G solvation = -3956.297170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60498 -40.19321 -38.60918 -37.87093 -34.91038 -33.87423 -32.70054 -31.68883 -31.31814 -30.73166 -27.62213 -26.88601 -25.30016 -24.61316 -23.59896 -22.48203 -20.94125 -19.90405 -19.41124 -18.83141 -18.39319 -17.02320 -16.57363 -16.53370 -16.19611 -15.88977 -15.51834 -15.36532 -14.96919 -14.69686 -14.06448 -13.92308 -13.49971 -13.45706 -13.21629 -12.99620 -12.63411 -12.54821 -12.45927 -12.33478 -12.05897 -12.01415 -11.63129 -11.47631 -11.19952 -10.97828 -10.77062 -10.60841 -10.60237 -10.55609 -10.39725 -10.38175 -9.98048 -9.57847 -8.94832 -8.60776 -8.23859 -8.17588 -6.31479 -3.82985 -0.42496 0.42609 1.00972 1.04638 2.53818 2.76934 3.01768 3.06430 3.14692 3.34805 3.73024 4.00641 4.09841 4.12217 4.26314 4.46396 4.50193 4.76687 4.84340 4.94205 5.09635 5.17207 5.22857 5.35992 5.46055 5.54930 5.61932 5.71000 5.78019 5.84610 5.90851 6.02404 6.09311 6.18806 6.42400 6.97812 7.04178 7.14143 7.49778 7.57589 7.71112 8.14023 8.59059 8.94529 9.41865 9.81803 10.81612 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.002010 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.093845 B =13930.172875 C =14499.809759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 H 0.078 0.922 4 C 0.076 3.924 5 H 0.061 0.939 6 N -0.654 5.654 7 C 0.047 3.953 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C -0.124 4.124 20 C 0.097 3.903 21 N -0.591 5.591 22 C 0.617 3.383 23 O -0.524 6.524 24 C -0.017 4.017 25 C -0.237 4.237 26 S 0.462 5.538 27 N -0.291 5.291 28 N -0.207 5.207 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.355 0.645 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 0.221 29.280 32.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.035 4.035 5 H 0.078 0.922 6 N -0.290 5.290 7 C -0.086 4.086 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.230 5.230 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.163 4.163 20 C -0.026 4.026 21 N -0.324 5.324 22 C 0.400 3.600 23 O -0.400 6.400 24 C -0.164 4.164 25 C -0.394 4.394 26 S 0.598 5.402 27 N -0.272 5.272 28 N -0.078 5.078 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.766 -1.304 30.007 32.636 hybrid contribution 1.080 1.734 -1.518 2.545 sum 13.845 0.430 28.489 31.678 Atomic orbital electron populations 1.22019 0.93111 1.03622 1.02684 1.21695 0.96215 0.95322 0.83316 0.90359 1.22582 0.93949 0.96010 0.90959 0.92162 1.60360 1.22241 1.43943 1.02444 1.21767 0.95949 1.01641 0.89265 1.19674 0.89787 0.84098 0.82877 1.90571 1.20227 1.53350 1.80419 1.42205 1.08754 1.65044 1.06982 1.19430 0.91272 1.46328 0.86310 0.86272 1.25050 0.97975 0.97674 0.95529 1.69623 1.32175 1.48413 1.01888 0.86663 0.84515 0.79072 0.79070 1.19591 1.20217 1.19537 1.22925 1.02656 0.96856 0.93834 1.22670 0.94379 0.89412 0.96114 1.48269 1.49412 1.30478 1.04198 1.16204 0.80388 0.83219 0.80171 1.90843 1.38361 1.27847 1.82910 1.22638 1.02235 0.96817 0.94676 1.28893 1.06452 1.07460 0.96567 1.81579 1.29093 1.10487 1.19044 1.78701 1.23784 1.25653 0.99019 1.71707 1.09479 1.05570 1.21012 0.91353 0.91628 0.90646 0.82189 0.89341 0.93616 0.79698 0.91615 0.89140 0.89819 0.88250 0.91080 0.77401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.40 37.16 0.31 -1.67 16 2 C 0.14 1.58 3.41 -66.95 -0.23 1.35 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 C 0.08 0.85 3.11 -65.88 -0.21 0.65 16 5 H 0.06 0.61 7.89 -51.93 -0.41 0.20 16 6 N -0.65 -9.47 5.21 -106.06 -0.55 -10.02 16 7 C 0.05 0.73 6.02 -4.98 -0.03 0.70 16 8 C 0.45 9.95 7.82 -10.99 -0.09 9.87 16 9 O -0.56 -14.86 15.78 5.55 0.09 -14.77 16 10 N -0.59 -13.84 5.09 -10.96 -0.06 -13.89 16 11 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 12 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 13 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 15 Si 0.88 19.21 27.73 -169.99 -4.71 14.50 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 19 C -0.12 -1.26 6.71 -24.58 -0.16 -1.43 16 20 C 0.10 0.94 6.08 -2.53 -0.02 0.92 16 21 N -0.59 -6.65 3.08 -164.25 -0.51 -7.16 16 22 C 0.62 7.40 7.62 -12.51 -0.10 7.30 16 23 O -0.52 -7.44 15.70 5.28 0.08 -7.35 16 24 C -0.02 -0.16 6.76 -83.78 -0.57 -0.73 16 25 C -0.24 -1.56 11.21 30.64 0.34 -1.22 16 26 S 0.46 2.28 23.38 -107.50 -2.51 -0.24 16 27 N -0.29 -2.56 12.49 60.35 0.75 -1.80 16 28 N -0.21 -2.07 8.51 32.74 0.28 -1.79 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.88 6.76 -51.93 -0.35 0.53 16 31 H 0.07 0.97 6.23 -51.93 -0.32 0.65 16 32 H 0.35 5.39 6.14 -39.29 -0.24 5.15 16 33 H 0.09 1.23 8.13 -51.93 -0.42 0.80 16 34 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.99 6.07 -51.92 -0.31 0.68 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.21 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 354.02 15.07 5.34 5.34 Total: -1.00 -34.60 354.02 -6.82 -41.42 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -4.81 Total: 12.63 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.98 Total: 8.04 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.69 Total: -59.56 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.17 Total: -22.12 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.51 Total: -0.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.60 -6.82 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734392811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.709 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds