Wall clock time and date at job start Tue Mar 31 2020 23:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.00036 * 2 1 4 4 C 1.54325 * 109.88348 * 238.89929 * 2 1 3 5 5 H 1.09000 * 110.87131 * 144.34115 * 4 2 1 6 6 N 1.46901 * 110.71849 * 21.13892 * 4 2 1 7 7 C 1.46898 * 111.00189 * 160.02256 * 6 4 2 8 8 C 1.50696 * 109.47176 * 180.02562 * 7 6 4 9 9 O 1.21288 * 120.00279 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99735 * 179.97438 * 8 7 6 11 11 C 1.37105 * 119.99904 * 179.97438 * 10 8 7 12 12 H 1.07991 * 119.99780 * 0.02562 * 11 10 8 13 13 C 1.38954 * 119.99815 * 179.72596 * 11 10 8 14 14 N 1.31414 * 119.99692 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00158 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46896 * 89.99806 * 15 13 11 17 17 H 1.48499 * 109.47039 * 209.99966 * 15 13 11 18 18 H 1.48502 * 109.46906 * 329.99872 * 15 13 11 19 19 C 1.55155 * 102.94472 * 262.77681 * 4 2 1 20 20 C 1.54909 * 101.58170 * 324.49745 * 19 4 2 21 21 N 1.47029 * 109.88017 * 121.09467 * 2 1 3 22 22 C 1.34776 * 125.64588 * 300.51510 * 21 2 1 23 23 O 1.21601 * 120.00426 * 359.97438 * 22 21 2 24 24 C 1.47450 * 119.99754 * 179.97438 * 22 21 2 25 25 C 1.37982 * 124.15473 * 180.02562 * 24 22 21 26 26 S 1.72104 * 104.03192 * 180.02562 * 25 24 22 27 27 N 1.56403 * 96.15749 * 359.97438 * 26 25 24 28 28 N 1.27426 * 109.87116 * 359.72890 * 27 26 25 29 29 H 1.08998 * 109.47284 * 181.09837 * 1 2 3 30 30 H 1.09003 * 109.47046 * 301.09942 * 1 2 3 31 31 H 1.08996 * 109.47021 * 61.09826 * 1 2 3 32 32 H 1.00907 * 110.99760 * 36.07056 * 6 4 2 33 33 H 1.09000 * 109.46741 * 60.00112 * 7 6 4 34 34 H 1.09002 * 109.46898 * 300.00102 * 7 6 4 35 35 H 0.97005 * 120.00189 * 0.02562 * 10 8 7 36 36 H 0.96995 * 119.99830 * 180.02562 * 14 13 11 37 37 H 1.09009 * 111.00227 * 82.57023 * 19 4 2 38 38 H 1.08994 * 111.00705 * 206.38265 * 19 4 2 39 39 H 1.09009 * 110.36755 * 155.84673 * 20 19 4 40 40 H 1.08997 * 110.36772 * 278.06054 * 20 19 4 41 41 H 1.08000 * 127.98184 * 359.96336 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9651 -0.2845 -1.6210 6 7 1.0265 -0.8029 -2.2903 7 6 1.6268 -1.0698 -3.6042 8 6 0.5438 -1.1166 -4.6511 9 8 -0.6141 -0.9441 -4.3340 10 7 0.8621 -1.3491 -5.9399 11 6 -0.1232 -1.3922 -6.8923 12 1 -1.1543 -1.2394 -6.6098 13 6 0.2056 -1.6263 -8.2220 14 7 -0.7388 -1.6671 -9.1349 15 14 1.9899 -1.8830 -8.7117 16 1 2.3215 -3.3284 -8.6339 17 1 2.1958 -1.4020 -10.1015 18 1 2.8707 -1.1226 -7.7891 19 6 2.3519 -2.1696 -0.6923 20 6 2.8568 -1.8498 0.7369 21 7 2.0300 -0.7141 1.1840 22 6 1.7741 -0.3853 2.4657 23 8 1.0750 0.5770 2.7187 24 6 2.3419 -1.1924 3.5613 25 6 2.1357 -0.9342 4.9010 26 16 3.0202 -2.1721 5.7055 27 7 3.5452 -2.8725 4.4094 28 7 3.1099 -2.2608 3.3798 29 1 -0.3634 -1.0274 0.0197 30 1 -0.3633 0.5308 0.8800 31 1 -0.3633 0.4967 -0.8996 32 1 0.4830 0.0471 -2.3070 33 1 2.1485 -2.0265 -3.5776 34 1 2.3337 -0.2770 -3.8484 35 1 1.7882 -1.4868 -6.1936 36 1 -0.5094 -1.8308 -10.0630 37 1 1.4451 -2.7737 -0.6602 38 1 3.1265 -2.6622 -1.2798 39 1 2.7088 -2.7081 1.3924 40 1 3.9096 -1.5686 0.7132 41 1 1.5543 -0.1384 5.3427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734392811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:37 Heat of formation + Delta-G solvation = 4.110370 kcal Electronic energy + Delta-G solvation = -26530.027145 eV Core-core repulsion = 22572.508126 eV Total energy + Delta-G solvation = -3957.519019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28144 -41.04055 -40.22010 -38.97089 -36.24613 -35.62760 -33.73916 -33.38092 -32.22739 -31.70719 -28.49971 -28.08233 -26.47492 -25.66797 -24.93494 -23.25238 -21.60321 -21.26193 -20.78466 -20.28103 -19.61140 -17.88599 -17.68111 -17.33565 -17.18407 -17.06689 -16.66593 -16.49527 -16.19557 -15.80915 -15.44719 -15.11389 -14.76243 -14.58470 -14.43932 -14.32006 -13.93137 -13.65455 -13.46988 -13.34945 -13.20321 -13.04424 -12.90567 -12.65813 -12.39974 -12.38778 -11.96188 -11.88596 -11.66683 -11.49166 -11.35380 -11.17133 -11.15817 -10.89220 -10.41060 -10.22894 -9.82182 -9.34666 -8.39578 -6.00465 -0.94817 -0.06142 0.29834 0.53029 1.31708 1.37748 1.46334 1.73301 1.95713 1.98763 2.24898 2.65786 2.75404 3.16963 3.33964 3.39505 3.63032 3.65257 3.75966 4.02719 4.17402 4.26208 4.29065 4.33155 4.43477 4.48240 4.59373 4.63403 4.67830 4.90845 5.01332 5.03377 5.23422 5.28867 5.37007 5.54738 5.92026 6.05566 6.24185 6.34871 6.41730 6.61626 6.86373 6.90357 7.42182 7.99287 8.78120 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.002010 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.093845 B =13930.172875 C =14499.809759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.138 3.862 3 H 0.084 0.916 4 C 0.083 3.917 5 H 0.087 0.913 6 N -0.672 5.672 7 C 0.062 3.938 8 C 0.449 3.551 9 O -0.615 6.615 10 N -0.591 5.591 11 C -0.327 4.327 12 H 0.054 0.946 13 C -0.018 4.018 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.257 1.257 17 H -0.277 1.277 18 H -0.229 1.229 19 C -0.120 4.120 20 C 0.104 3.896 21 N -0.593 5.593 22 C 0.612 3.388 23 O -0.557 6.557 24 C -0.043 4.043 25 C -0.239 4.239 26 S 0.564 5.436 27 N -0.331 5.331 28 N -0.226 5.226 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.348 0.652 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.390 0.610 36 H 0.278 0.722 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.427 -0.280 31.051 35.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.028 4.028 5 H 0.105 0.895 6 N -0.308 5.308 7 C -0.071 4.071 8 C 0.237 3.763 9 O -0.499 6.499 10 N -0.233 5.233 11 C -0.457 4.457 12 H 0.072 0.928 13 C -0.216 4.216 14 N -0.577 5.577 15 Si 0.786 3.214 16 H -0.182 1.182 17 H -0.202 1.202 18 H -0.152 1.152 19 C -0.158 4.158 20 C -0.019 4.019 21 N -0.325 5.325 22 C 0.397 3.603 23 O -0.435 6.435 24 C -0.191 4.191 25 C -0.395 4.395 26 S 0.699 5.301 27 N -0.312 5.312 28 N -0.095 5.095 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.226 0.774 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 17.133 -1.826 31.802 36.170 hybrid contribution -0.422 1.891 -1.836 2.669 sum 16.711 0.065 29.966 34.310 Atomic orbital electron populations 1.21885 0.94622 1.02172 1.01811 1.21661 0.94962 0.95924 0.84021 0.89843 1.22624 0.93738 0.96806 0.89593 0.89511 1.60338 1.23681 1.44009 1.02746 1.21694 0.93570 1.04505 0.87282 1.21011 0.90747 0.81102 0.83463 1.90554 1.23266 1.54735 1.81350 1.42024 1.08673 1.65852 1.06752 1.18997 0.89996 1.48381 0.88291 0.92799 1.26156 1.04570 0.96304 0.94610 1.69813 1.35723 1.49526 1.02605 0.85342 0.76863 0.80066 0.79095 1.18161 1.20249 1.15176 1.22918 1.02496 0.96033 0.94371 1.22705 0.94813 0.88800 0.95551 1.48355 1.49358 1.30747 1.04038 1.16539 0.79932 0.83059 0.80770 1.90813 1.39862 1.29315 1.83494 1.22446 1.03891 0.97651 0.95071 1.29260 1.06028 1.08242 0.96003 1.81215 1.25887 1.07459 1.15522 1.78372 1.25241 1.27101 1.00490 1.71733 1.10023 1.05757 1.21973 0.92981 0.92770 0.91186 0.82990 0.86377 0.90072 0.77405 0.91214 0.91191 0.87485 0.88567 0.89484 0.75688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.40 71.98 0.60 -3.26 16 2 C 0.14 3.04 3.41 45.34 0.15 3.20 16 3 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.08 1.64 3.11 46.10 0.14 1.78 16 5 H 0.09 1.35 7.89 -2.39 -0.02 1.33 16 6 N -0.67 -18.44 5.21 -489.46 -2.55 -20.99 16 7 C 0.06 1.73 6.02 85.56 0.52 2.25 16 8 C 0.45 19.68 7.82 87.66 0.69 20.36 16 9 O -0.61 -33.65 15.78 -3.05 -0.05 -33.70 16 10 N -0.59 -27.30 5.09 -306.99 -1.56 -28.86 16 11 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 12 H 0.05 3.76 7.39 -2.92 -0.02 3.74 16 13 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 14 N -0.94 -56.55 13.96 21.66 0.30 -56.25 16 15 Si 0.97 38.34 27.73 68.60 1.90 40.24 16 16 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 17 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 19 C -0.12 -2.14 6.71 31.99 0.21 -1.93 16 20 C 0.10 1.81 6.08 86.85 0.53 2.34 16 21 N -0.59 -12.89 3.08 -791.84 -2.44 -15.33 16 22 C 0.61 14.56 7.62 86.67 0.66 15.22 16 23 O -0.56 -16.01 15.70 -4.03 -0.06 -16.07 16 24 C -0.04 -0.81 6.76 41.36 0.28 -0.53 16 25 C -0.24 -2.72 11.21 67.76 0.76 -1.96 16 26 S 0.56 4.04 23.38 -56.49 -1.32 2.72 16 27 N -0.33 -5.22 12.49 37.02 0.46 -4.76 16 28 N -0.23 -4.24 8.51 -50.34 -0.43 -4.67 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.53 6.76 -2.39 -0.02 1.51 16 31 H 0.07 1.89 6.23 -2.39 -0.01 1.87 16 32 H 0.35 10.45 6.14 -89.69 -0.55 9.90 16 33 H 0.12 2.71 8.13 -2.39 -0.02 2.69 16 34 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 35 H 0.39 14.71 5.76 -92.70 -0.53 14.18 16 36 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.81 6.07 -2.38 -0.01 1.80 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.23 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -82.69 354.02 0.08 -82.61 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.04 Total: 36.35 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 5.87 Total: 18.70 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -6.22 Total: -130.86 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.11 Total: -49.77 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.32 Total: 2.72 kcal Total: -82.69 0.08 -82.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734392811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.721 kcal (2) G-P(sol) polarization free energy of solvation -82.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds