Wall clock time and date at job start Tue Mar 31 2020 22:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47358 * 269.99964 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00689 * 3 2 1 6 6 H 1.48505 * 109.46671 * 150.00078 * 3 2 1 7 7 C 1.38802 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00332 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.09007 * 110.63969 * 34.30354 * 14 13 11 16 16 C 1.55154 * 110.72324 * 271.16199 * 14 13 11 17 17 C 1.54912 * 101.58394 * 206.13123 * 16 14 13 18 18 N 1.47420 * 104.83066 * 37.00976 * 17 16 14 19 19 C 1.34771 * 125.64997 * 155.83681 * 18 17 16 20 20 O 1.21288 * 120.00158 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.99919 * 0.02562 * 19 18 17 22 22 C 1.50701 * 109.47208 * 180.02562 * 21 19 18 23 23 N 1.33238 * 125.52701 * 89.99935 * 22 21 19 24 24 C 1.30835 * 109.82983 * 180.02562 * 23 22 21 25 25 N 1.34434 * 108.07504 * 359.97438 * 24 23 22 26 26 H 0.96995 * 126.81933 * 180.02562 * 25 24 23 27 27 N 1.30716 * 125.52576 * 269.69477 * 22 21 19 28 28 C 1.47329 * 108.73493 * 335.71532 * 18 17 16 29 29 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 31 31 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 32 32 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 33 33 H 1.08997 * 111.00426 * 324.20751 * 16 14 13 34 34 H 1.09009 * 111.00378 * 88.05826 * 16 14 13 35 35 H 1.08995 * 110.36820 * 155.84739 * 17 16 14 36 36 H 1.08996 * 110.36564 * 278.06258 * 17 16 14 37 37 H 1.09004 * 109.46821 * 300.00003 * 21 19 18 38 38 H 1.08993 * 109.46959 * 60.00041 * 21 19 18 39 39 H 1.08002 * 125.96199 * 179.97438 * 24 23 22 40 40 H 1.09001 * 110.06042 * 241.87098 * 28 18 17 41 41 H 1.09001 * 109.84840 * 120.61393 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3439 -2.2964 -0.0070 13 7 6.0457 -4.4948 -0.0030 14 6 7.4906 -4.7359 -0.0037 15 1 8.0086 -3.9681 0.5711 16 6 8.0364 -4.7970 -1.4548 17 6 9.2913 -5.6879 -1.2779 18 7 8.9024 -6.6919 -0.2709 19 6 9.4562 -7.9116 -0.1233 20 8 9.0546 -8.6592 0.7433 21 6 10.5746 -8.3468 -1.0349 22 6 11.0124 -9.7400 -0.6632 23 7 10.5122 -10.8685 -1.1649 24 6 11.1145 -11.8983 -0.6278 25 7 12.0291 -11.4387 0.2438 26 1 12.6283 -11.9696 0.7914 27 7 11.9484 -10.0373 0.1995 28 6 7.8100 -6.1406 0.5496 29 1 -0.4850 0.8400 0.0004 30 1 3.6433 -3.4311 -0.8926 31 1 3.6440 -3.4323 0.8874 32 1 5.4290 -5.2435 -0.0036 33 1 7.3152 -5.2663 -2.1240 34 1 8.3094 -3.8039 -1.8117 35 1 9.5471 -6.1741 -2.2193 36 1 10.1310 -5.0932 -0.9185 37 1 10.2254 -8.3393 -2.0674 38 1 11.4156 -7.6613 -0.9308 39 1 10.9122 -12.9364 -0.8464 40 1 8.1251 -6.0663 1.5905 41 1 6.9299 -6.7789 0.4713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737003219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:44 Heat of formation + Delta-G solvation = 23.334908 kcal Electronic energy + Delta-G solvation = -25408.797525 eV Core-core repulsion = 21452.112145 eV Total energy + Delta-G solvation = -3956.685380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.54860 -40.53329 -39.31142 -37.56706 -34.31770 -33.74431 -32.45005 -32.17333 -31.31950 -29.90474 -29.51149 -27.82795 -25.62531 -23.96675 -23.22554 -21.88062 -21.09035 -20.60202 -19.54807 -18.74294 -17.97912 -17.63981 -17.03814 -16.34199 -16.06852 -15.85016 -15.63701 -15.17820 -15.07230 -14.96267 -14.43443 -13.97035 -13.89855 -13.64664 -13.43159 -13.22273 -12.85543 -12.80941 -12.58388 -12.51514 -12.38183 -12.11237 -11.75808 -11.28034 -11.21106 -11.02032 -10.66134 -10.62913 -10.49774 -10.34328 -10.02094 -9.87518 -9.61429 -9.17045 -9.02539 -8.99523 -8.52698 -6.93802 -6.29944 -4.02138 1.15420 2.11572 2.25750 2.28247 2.61228 2.82030 2.87149 3.28748 3.32775 3.49112 3.59658 3.62730 3.98868 4.13498 4.22878 4.31843 4.39786 4.51504 4.69560 4.76294 4.84104 4.87282 4.91106 4.99681 5.09105 5.16074 5.23601 5.40643 5.52838 5.65999 5.72432 5.73868 5.78982 5.87751 5.91972 5.99129 6.43467 6.56449 7.05196 7.49795 7.61535 7.76433 7.92985 8.39342 8.40918 9.16031 10.79257 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.043384 B = 0.001671 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.243444 B =16756.849217 C =17063.867837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.729 5.729 14 C 0.137 3.863 15 H 0.107 0.893 16 C -0.146 4.146 17 C 0.097 3.903 18 N -0.618 5.618 19 C 0.539 3.461 20 O -0.528 6.528 21 C -0.043 4.043 22 C 0.247 3.753 23 N -0.534 5.534 24 C 0.264 3.736 25 N -0.483 5.483 26 H 0.442 0.558 27 N -0.303 5.303 28 C 0.105 3.895 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.402 0.598 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.224 0.776 40 H 0.079 0.921 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.215 -22.858 -3.586 34.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.383 5.383 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.185 4.185 17 C -0.026 4.026 18 N -0.353 5.353 19 C 0.326 3.674 20 O -0.404 6.404 21 C -0.086 4.086 22 C -0.037 4.037 23 N -0.262 5.262 24 C -0.035 4.035 25 N -0.201 5.201 26 H 0.288 0.712 27 N -0.133 5.133 28 C -0.018 4.018 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.237 0.763 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.240 0.760 40 H 0.097 0.903 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 26.262 -21.122 -2.977 33.834 hybrid contribution -0.813 -1.381 0.286 1.628 sum 25.449 -22.504 -2.692 34.078 Atomic orbital electron populations 1.69940 1.05922 1.27780 1.47976 1.24716 0.94449 0.98966 0.93164 0.86731 0.81884 0.83287 0.79916 1.19208 1.19939 1.15933 1.22317 0.88244 0.97563 1.58882 0.89359 1.84773 1.09348 0.99887 1.97441 1.23288 0.93774 1.04524 1.05970 1.20301 0.90664 0.82088 0.74820 1.90699 1.58723 1.42117 1.47509 1.45930 1.06316 1.08429 1.77642 1.21845 0.82526 0.96059 0.96484 0.87490 1.23258 0.96695 1.01069 0.97471 1.22462 0.98161 0.89986 0.92025 1.48396 1.37005 1.14888 1.35060 1.19830 0.83039 0.79864 0.84664 1.90761 1.62693 1.52083 1.34863 1.19842 0.98322 0.89186 1.01216 1.23265 0.92233 0.95207 0.92962 1.70360 1.29000 0.97118 1.29758 1.26097 0.87998 1.00665 0.88721 1.48080 1.31880 1.05418 1.34694 0.71197 1.77977 1.23127 0.89848 1.22303 1.22144 0.90684 0.93574 0.95422 0.91928 0.88361 0.88339 0.76321 0.89835 0.88681 0.89843 0.90394 0.85820 0.86279 0.75974 0.90267 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.53 27.74 -169.99 -4.71 16.81 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 10 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 11 C 0.54 8.76 7.85 -10.98 -0.09 8.67 16 12 O -0.52 -10.29 15.55 5.56 0.09 -10.21 16 13 N -0.73 -8.32 5.19 -52.03 -0.27 -8.59 16 14 C 0.14 1.34 3.26 -66.10 -0.22 1.13 16 15 H 0.11 1.19 7.63 -51.92 -0.40 0.80 16 16 C -0.15 -1.16 6.77 -24.58 -0.17 -1.33 16 17 C 0.10 0.58 6.69 -2.53 -0.02 0.56 16 18 N -0.62 -5.38 3.33 -170.28 -0.57 -5.95 16 19 C 0.54 5.71 7.84 -10.99 -0.09 5.62 16 20 O -0.53 -7.93 16.36 5.55 0.09 -7.84 16 21 C -0.04 -0.33 5.33 -29.03 -0.15 -0.49 16 22 C 0.25 2.52 6.63 -156.85 -1.04 1.48 16 23 N -0.53 -5.31 11.19 -11.97 -0.13 -5.44 16 24 C 0.26 1.57 13.13 -90.65 -1.19 0.38 16 25 N -0.48 -2.97 7.45 29.53 0.22 -2.75 16 26 H 0.44 0.98 8.96 -182.34 -1.63 -0.65 16 27 N -0.30 -3.08 12.80 32.42 0.41 -2.67 16 28 C 0.10 0.97 6.64 -2.90 -0.02 0.95 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 32 H 0.40 3.63 8.34 -40.82 -0.34 3.29 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.08 0.32 7.47 -51.93 -0.39 -0.07 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.12 0.67 7.85 -51.93 -0.41 0.26 16 38 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.22 0.14 8.06 -52.49 -0.42 -0.28 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -40.71 368.26 -9.61 -50.32 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.53 Total: -1.22 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.54 Total: 3.03 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.44 Total: -50.98 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.18 Total: -18.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.71 -9.61 -50.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737003219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.654 kcal (2) G-P(sol) polarization free energy of solvation -40.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds