Wall clock time and date at job start Tue Mar 31 2020 22:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48503 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47207 * 300.00054 * 3 2 1 6 6 H 1.48507 * 109.47065 * 60.00104 * 3 2 1 7 7 C 1.38803 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00392 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00260 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99986 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99863 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99738 * 179.97438 * 13 11 10 15 15 C 1.53043 * 109.45783 * 155.00266 * 14 13 11 16 16 C 1.53189 * 109.31217 * 181.38858 * 15 14 13 17 17 N 1.46931 * 108.77335 * 305.36374 * 16 15 14 18 18 C 1.34782 * 120.62910 * 233.58328 * 17 16 15 19 19 O 1.21612 * 119.99938 * 359.93680 * 18 17 16 20 20 C 1.47236 * 119.99757 * 180.20619 * 18 17 16 21 21 C 1.36997 * 127.18763 * 208.30550 * 20 18 17 22 22 N 1.33322 * 106.37452 * 179.97438 * 21 20 18 23 23 N 1.28513 * 109.43446 * 359.97438 * 22 21 20 24 24 N 1.28708 * 110.64103 * 359.75573 * 23 22 21 25 25 H 0.97003 * 126.04000 * 180.23774 * 24 23 22 26 26 C 1.46921 * 118.73901 * 53.86240 * 17 16 15 27 27 C 1.53037 * 109.46305 * 275.07172 * 14 13 11 28 28 H 0.97007 * 120.00140 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47184 * 60.00149 * 10 9 7 30 30 H 1.09004 * 109.46834 * 300.00106 * 10 9 7 31 31 H 0.96993 * 119.99868 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.45081 * 35.03975 * 14 13 11 33 33 H 1.08995 * 109.49708 * 61.43681 * 15 14 13 34 34 H 1.09003 * 109.52356 * 301.35168 * 15 14 13 35 35 H 1.09001 * 109.58908 * 185.57604 * 16 15 14 36 36 H 1.09004 * 109.70774 * 65.22032 * 16 15 14 37 37 H 1.08002 * 126.81774 * 359.97136 * 21 20 18 38 38 H 1.09005 * 109.58616 * 65.92244 * 26 17 16 39 39 H 1.08999 * 109.58811 * 186.34627 * 26 17 16 40 40 H 1.09002 * 109.49721 * 298.56487 * 27 14 13 41 41 H 1.09001 * 109.50059 * 58.66266 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9871 -5.3028 0.0030 12 8 0.7909 -5.5023 0.0021 13 7 2.8439 -6.3432 0.0037 14 6 2.3301 -7.7151 0.0051 15 6 3.3759 -8.6518 -0.6041 16 6 2.8217 -10.0797 -0.6328 17 7 2.3978 -10.4497 0.7245 18 6 2.8575 -11.5763 1.3042 19 8 3.6298 -12.2981 0.7029 20 6 2.4200 -11.9361 2.6633 21 6 3.1155 -12.6658 3.5910 22 7 2.3368 -12.7410 4.6706 23 7 1.2380 -12.1120 4.4500 24 7 1.2349 -11.6055 3.2667 25 1 0.5190 -11.0842 2.8709 26 6 1.4585 -9.5717 1.4353 27 6 2.0322 -8.1466 1.4429 28 1 -0.4851 0.8401 -0.0004 29 1 3.1236 -3.7311 0.8925 30 1 3.1250 -3.7318 -0.8875 31 1 3.8006 -6.1836 0.0040 32 1 1.4146 -7.7605 -0.5847 33 1 4.2831 -8.6258 -0.0006 34 1 3.6053 -8.3302 -1.6200 35 1 3.5971 -10.7659 -0.9733 36 1 1.9678 -10.1290 -1.3085 37 1 4.0993 -13.0951 3.4717 38 1 0.4952 -9.5779 0.9252 39 1 1.3341 -9.9225 2.4597 40 1 2.9522 -8.1253 2.0271 41 1 1.3047 -7.4652 1.8839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737059019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:38 Heat of formation + Delta-G solvation = 41.254365 kcal Electronic energy + Delta-G solvation = -26209.498063 eV Core-core repulsion = 22253.589729 eV Total energy + Delta-G solvation = -3955.908335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.95397 -40.77796 -39.46600 -37.75028 -35.12488 -34.07172 -32.49758 -32.42053 -31.71140 -31.27197 -29.07225 -26.13012 -25.52037 -24.46864 -23.96675 -23.15104 -21.81613 -20.73119 -20.43856 -18.74185 -17.93434 -17.67441 -16.93268 -16.76573 -16.48145 -16.11702 -15.60364 -15.18415 -14.88599 -14.86395 -14.83637 -14.42946 -14.11433 -14.05170 -13.50432 -13.33832 -13.00206 -12.74620 -12.65419 -12.37571 -12.19369 -11.90739 -11.72532 -11.49650 -11.14555 -11.12039 -11.09281 -11.07387 -10.80849 -10.74927 -10.06120 -9.87633 -9.64307 -9.33808 -9.15474 -9.08688 -8.32253 -6.58068 -6.28586 -3.99644 0.38871 1.73477 1.86012 2.11918 2.46676 2.89569 2.92602 3.16880 3.22741 3.27025 3.52028 3.57206 3.97762 4.00298 4.13854 4.27318 4.37455 4.44565 4.57389 4.64125 4.66933 4.77892 4.87919 4.98531 5.07085 5.17162 5.25995 5.28407 5.41851 5.45720 5.54304 5.59426 5.77835 5.82179 5.87041 6.00831 6.04415 6.44566 6.54200 7.31532 7.52757 7.54541 7.75225 8.28769 8.44842 9.17233 10.78863 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.001992 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.740235 B =14055.310256 C =14632.139032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.155 4.155 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.736 5.736 14 C 0.148 3.852 15 C -0.143 4.143 16 C 0.118 3.882 17 N -0.605 5.605 18 C 0.597 3.403 19 O -0.513 6.513 20 C -0.064 4.064 21 C 0.031 3.969 22 N -0.267 5.267 23 N -0.047 5.047 24 N -0.378 5.378 25 H 0.454 0.546 26 C 0.091 3.909 27 C -0.145 4.145 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.204 0.796 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -23.190 1.433 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.389 5.389 14 C 0.042 3.958 15 C -0.181 4.181 16 C -0.004 4.004 17 N -0.339 5.339 18 C 0.382 3.618 19 O -0.387 6.387 20 C -0.198 4.198 21 C -0.128 4.128 22 N -0.132 5.132 23 N -0.028 5.028 24 N -0.110 5.110 25 H 0.307 0.693 26 C -0.033 4.033 27 C -0.185 4.185 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.221 0.779 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.430 -24.036 2.434 24.561 hybrid contribution 2.488 2.002 -1.119 3.384 sum 6.918 -22.034 1.315 23.132 Atomic orbital electron populations 1.70019 1.05958 1.27423 1.46841 1.24999 0.95044 0.99088 0.94475 0.86110 0.79579 0.81818 0.77952 1.19610 1.20527 1.20532 1.22896 0.94927 0.91569 1.58993 0.90860 1.85376 1.04837 0.96437 1.96735 1.23541 1.06682 0.95316 1.04981 1.20353 0.86534 0.86320 0.74736 1.90695 1.15312 1.85569 1.47445 1.46070 1.10037 1.04955 1.77857 1.20811 0.98082 0.81363 0.95533 1.22231 0.98957 0.94024 1.02938 1.21686 1.01341 0.95938 0.81460 1.48102 1.46051 1.22471 1.17254 1.16814 0.81002 0.81137 0.82802 1.90876 1.34823 1.50621 1.62337 1.22285 0.90632 1.08907 0.97970 1.23924 1.01851 0.98663 0.88402 1.75027 0.98487 1.16011 1.23663 1.78263 1.17304 1.08893 0.98378 1.46429 1.15733 1.37321 1.11534 0.69299 1.22299 0.93314 0.90903 0.96812 1.22411 1.02772 0.94766 0.98522 0.92186 0.89219 0.89167 0.76686 0.88942 0.90601 0.89217 0.87860 0.90212 0.77911 0.89308 0.90339 0.90863 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.22 55.49 0.73 -24.80 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.80 9.50 30.94 0.29 -14.51 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 11 C 0.53 8.75 7.81 -10.98 -0.09 8.67 16 12 O -0.52 -10.37 15.52 5.56 0.09 -10.28 16 13 N -0.74 -7.98 5.08 -53.77 -0.27 -8.25 16 14 C 0.15 1.28 2.41 -67.89 -0.16 1.11 16 15 C -0.14 -0.86 5.55 -26.61 -0.15 -1.01 16 16 C 0.12 0.70 6.43 -3.71 -0.02 0.67 16 17 N -0.60 -3.92 2.97 -173.84 -0.52 -4.44 16 18 C 0.60 4.95 7.66 -12.60 -0.10 4.86 16 19 O -0.51 -5.71 16.44 5.27 0.09 -5.62 16 20 C -0.06 -0.49 6.48 -82.33 -0.53 -1.03 16 21 C 0.03 0.26 11.97 -17.35 -0.21 0.05 16 22 N -0.27 -2.73 12.35 30.47 0.38 -2.35 16 23 N -0.05 -0.44 13.35 60.35 0.81 0.37 16 24 N -0.38 -2.51 5.77 33.31 0.19 -2.32 16 25 H 0.45 1.66 6.48 -190.33 -1.23 0.43 16 26 C 0.09 0.50 5.68 -3.49 -0.02 0.48 16 27 C -0.15 -1.13 5.67 -26.39 -0.15 -1.28 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 31 H 0.40 3.34 8.60 -40.82 -0.35 2.98 16 32 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.67 7.00 -51.93 -0.36 0.31 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.36 3.82 -51.93 -0.20 0.16 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -36.34 359.74 -7.22 -43.56 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.89 Total: -0.70 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.01 Total: -2.71 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.32 Total: -41.78 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.17 Total: -15.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.34 -7.22 -43.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737059019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.810 kcal (2) G-P(sol) polarization free energy of solvation -36.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds