Wall clock time and date at job start Tue Mar 31 2020 22:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48503 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47207 * 300.00054 * 3 2 1 6 6 H 1.48507 * 109.47065 * 60.00104 * 3 2 1 7 7 C 1.38803 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00392 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00260 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99986 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99863 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99738 * 179.97438 * 13 11 10 15 15 C 1.53043 * 109.45783 * 155.00266 * 14 13 11 16 16 C 1.53189 * 109.31217 * 181.38858 * 15 14 13 17 17 N 1.46931 * 108.77335 * 305.36374 * 16 15 14 18 18 C 1.34782 * 120.62910 * 233.58328 * 17 16 15 19 19 O 1.21612 * 119.99938 * 359.93680 * 18 17 16 20 20 C 1.47236 * 119.99757 * 180.20619 * 18 17 16 21 21 C 1.36997 * 127.18763 * 208.30550 * 20 18 17 22 22 N 1.33322 * 106.37452 * 179.97438 * 21 20 18 23 23 N 1.28513 * 109.43446 * 359.97438 * 22 21 20 24 24 N 1.28708 * 110.64103 * 359.75573 * 23 22 21 25 25 H 0.97003 * 126.04000 * 180.23774 * 24 23 22 26 26 C 1.46921 * 118.73901 * 53.86240 * 17 16 15 27 27 C 1.53037 * 109.46305 * 275.07172 * 14 13 11 28 28 H 0.97007 * 120.00140 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47184 * 60.00149 * 10 9 7 30 30 H 1.09004 * 109.46834 * 300.00106 * 10 9 7 31 31 H 0.96993 * 119.99868 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.45081 * 35.03975 * 14 13 11 33 33 H 1.08995 * 109.49708 * 61.43681 * 15 14 13 34 34 H 1.09003 * 109.52356 * 301.35168 * 15 14 13 35 35 H 1.09001 * 109.58908 * 185.57604 * 16 15 14 36 36 H 1.09004 * 109.70774 * 65.22032 * 16 15 14 37 37 H 1.08002 * 126.81774 * 359.97136 * 21 20 18 38 38 H 1.09005 * 109.58616 * 65.92244 * 26 17 16 39 39 H 1.08999 * 109.58811 * 186.34627 * 26 17 16 40 40 H 1.09002 * 109.49721 * 298.56487 * 27 14 13 41 41 H 1.09001 * 109.50059 * 58.66266 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9871 -5.3028 0.0030 12 8 0.7909 -5.5023 0.0021 13 7 2.8439 -6.3432 0.0037 14 6 2.3301 -7.7151 0.0051 15 6 3.3759 -8.6518 -0.6041 16 6 2.8217 -10.0797 -0.6328 17 7 2.3978 -10.4497 0.7245 18 6 2.8575 -11.5763 1.3042 19 8 3.6298 -12.2981 0.7029 20 6 2.4200 -11.9361 2.6633 21 6 3.1155 -12.6658 3.5910 22 7 2.3368 -12.7410 4.6706 23 7 1.2380 -12.1120 4.4500 24 7 1.2349 -11.6055 3.2667 25 1 0.5190 -11.0842 2.8709 26 6 1.4585 -9.5717 1.4353 27 6 2.0322 -8.1466 1.4429 28 1 -0.4851 0.8401 -0.0004 29 1 3.1236 -3.7311 0.8925 30 1 3.1250 -3.7318 -0.8875 31 1 3.8006 -6.1836 0.0040 32 1 1.4146 -7.7605 -0.5847 33 1 4.2831 -8.6258 -0.0006 34 1 3.6053 -8.3302 -1.6200 35 1 3.5971 -10.7659 -0.9733 36 1 1.9678 -10.1290 -1.3085 37 1 4.0993 -13.0951 3.4717 38 1 0.4952 -9.5779 0.9252 39 1 1.3341 -9.9225 2.4597 40 1 2.9522 -8.1253 2.0271 41 1 1.3047 -7.4652 1.8839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737059019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:37 Heat of formation + Delta-G solvation = 13.077385 kcal Electronic energy + Delta-G solvation = -26210.719909 eV Core-core repulsion = 22253.589729 eV Total energy + Delta-G solvation = -3957.130180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.59024 -41.48092 -40.54961 -38.57427 -35.99304 -34.78911 -34.58800 -33.14472 -32.54032 -31.89562 -30.35354 -27.69706 -26.77402 -25.05434 -24.66186 -23.78440 -22.47923 -21.66467 -21.34326 -19.84343 -19.28662 -18.38125 -17.81575 -17.53628 -17.44672 -17.09374 -16.88275 -16.46222 -16.15236 -15.91609 -15.46959 -15.43800 -15.09273 -14.82951 -14.70973 -14.51155 -14.08501 -13.70077 -13.44932 -13.31527 -13.16236 -13.13315 -12.92505 -12.59690 -12.51897 -12.34832 -12.18569 -11.81554 -11.76609 -11.65329 -11.43681 -11.16421 -10.94733 -10.71406 -10.27376 -10.13200 -9.96564 -8.65940 -8.35688 -6.12690 -0.23627 1.08885 1.27237 1.27922 1.40639 1.47170 1.52800 1.57707 1.62169 1.88036 2.24658 2.29673 2.94924 2.98844 3.31194 3.40181 3.45067 3.65313 3.78650 3.84260 3.96397 4.00577 4.06134 4.15080 4.28121 4.30761 4.33167 4.52027 4.54986 4.71648 4.72680 4.85523 4.88444 4.99724 5.15774 5.27777 5.41954 5.48342 5.51076 5.95286 6.19428 6.50937 6.69246 7.06438 7.10057 7.25237 8.73501 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.001992 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.740235 B =14055.310256 C =14632.139032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.559 6.559 13 N -0.710 5.710 14 C 0.145 3.855 15 C -0.130 4.130 16 C 0.117 3.883 17 N -0.597 5.597 18 C 0.603 3.397 19 O -0.542 6.542 20 C -0.062 4.062 21 C 0.027 3.973 22 N -0.294 5.294 23 N -0.064 5.064 24 N -0.359 5.359 25 H 0.466 0.534 26 C 0.095 3.905 27 C -0.141 4.141 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.415 0.585 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.222 0.778 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.824 -23.573 1.023 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.284 4.284 11 C 0.324 3.676 12 O -0.437 6.437 13 N -0.363 5.363 14 C 0.040 3.960 15 C -0.169 4.169 16 C -0.005 4.005 17 N -0.330 5.330 18 C 0.388 3.612 19 O -0.418 6.418 20 C -0.197 4.197 21 C -0.133 4.133 22 N -0.158 5.158 23 N -0.046 5.046 24 N -0.094 5.094 25 H 0.322 0.678 26 C -0.028 4.028 27 C -0.181 4.181 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.252 0.748 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.238 0.762 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.406 -24.435 2.028 25.342 hybrid contribution 1.918 2.019 -1.018 2.965 sum 8.324 -22.416 1.010 23.933 Atomic orbital electron populations 1.70176 1.07894 1.28517 1.48097 1.26097 0.95961 1.03260 0.93836 0.84935 0.78637 0.76522 0.78048 1.18087 1.19976 1.20030 1.23233 0.95313 0.92131 1.58650 0.90021 1.85511 1.10482 0.99122 1.97033 1.23396 1.03562 0.94775 1.06642 1.19963 0.86307 0.86481 0.74883 1.90687 1.17129 1.85963 1.49903 1.45821 1.10251 1.04766 1.75507 1.21011 0.98517 0.80250 0.96238 1.22148 0.98071 0.93160 1.03504 1.21782 1.01954 0.95550 0.81222 1.48119 1.45585 1.21887 1.17400 1.16781 0.80564 0.81226 0.82630 1.90868 1.36254 1.51676 1.63021 1.22244 0.90809 1.08883 0.97778 1.24306 1.02513 0.98504 0.87977 1.75009 0.99084 1.16944 1.24776 1.78216 1.17410 1.09566 0.99360 1.46415 1.15748 1.36470 1.10777 0.67838 1.22335 0.93609 0.89255 0.97641 1.22318 1.02461 0.95645 0.97643 0.92014 0.87506 0.87351 0.74784 0.90254 0.89897 0.88006 0.87983 0.88871 0.76185 0.87502 0.89404 0.90520 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.65 13.22 21.65 0.29 -54.37 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.60 29.55 68.60 2.03 44.63 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.55 -30.20 9.50 67.96 0.65 -29.56 16 8 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 9 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 10 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 11 C 0.54 17.13 7.81 87.66 0.68 17.81 16 12 O -0.56 -22.64 15.52 -3.02 -0.05 -22.69 16 13 N -0.71 -13.88 5.08 -442.41 -2.25 -16.12 16 14 C 0.14 2.20 2.41 45.02 0.11 2.31 16 15 C -0.13 -1.19 5.55 30.67 0.17 -1.02 16 16 C 0.12 1.07 6.43 86.36 0.56 1.63 16 17 N -0.60 -6.34 2.97 -822.16 -2.44 -8.77 16 18 C 0.60 8.85 7.66 86.61 0.66 9.52 16 19 O -0.54 -11.22 16.44 -4.07 -0.07 -11.29 16 20 C -0.06 -0.87 6.48 40.40 0.26 -0.61 16 21 C 0.03 0.41 11.97 84.18 1.01 1.42 16 22 N -0.29 -5.81 12.35 -57.50 -0.71 -6.52 16 23 N -0.06 -1.15 13.35 37.02 0.49 -0.65 16 24 N -0.36 -4.25 5.77 -48.52 -0.28 -4.53 16 25 H 0.47 2.58 6.48 -219.90 -1.42 1.15 16 26 C 0.10 0.83 5.68 86.51 0.49 1.32 16 27 C -0.14 -1.95 5.67 30.82 0.17 -1.78 16 28 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 29 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 30 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.42 5.63 8.60 -92.71 -0.80 4.83 16 32 H 0.08 1.50 7.58 -2.39 -0.02 1.48 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 1.08 7.00 -2.39 -0.02 1.06 16 36 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.09 0.61 3.82 -2.39 -0.01 0.61 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -80.92 359.74 0.41 -80.51 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -1.12 Total: 10.95 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 5.67 Total: -2.11 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -4.89 Total: -90.97 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.11 Total: -33.98 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -80.92 0.41 -80.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737059019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.587 kcal (2) G-P(sol) polarization free energy of solvation -80.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds