Wall clock time and date at job start Tue Mar 31 2020 22:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48507 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47091 * 299.99753 * 3 2 1 6 6 H 1.48495 * 109.47430 * 60.00035 * 3 2 1 7 7 C 1.38795 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99785 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00514 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00498 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47544 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99616 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99435 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.89665 * 328.87925 * 14 13 11 16 16 C 1.55164 * 111.00510 * 92.80227 * 14 13 11 17 17 C 1.54338 * 103.01948 * 153.37672 * 16 14 13 18 18 N 1.47018 * 107.26735 * 338.14177 * 17 16 14 19 19 C 1.34776 * 125.64727 * 178.85202 * 18 17 16 20 20 O 1.21282 * 119.99940 * 179.69585 * 19 18 17 21 21 C 1.50698 * 120.00035 * 359.68700 * 19 18 17 22 22 C 1.50706 * 109.47294 * 180.02562 * 21 19 18 23 23 N 1.33243 * 125.52280 * 90.00034 * 22 21 19 24 24 C 1.30836 * 109.82576 * 180.02562 * 23 22 21 25 25 N 1.34429 * 108.07502 * 0.02562 * 24 23 22 26 26 H 0.97002 * 126.81744 * 180.02562 * 25 24 23 27 27 N 1.30711 * 125.52822 * 269.69858 * 22 21 19 28 28 C 1.47429 * 108.70306 * 358.58680 * 18 17 16 29 29 H 0.97002 * 119.99760 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47006 * 59.99625 * 10 9 7 31 31 H 1.09007 * 109.47091 * 300.00454 * 10 9 7 32 32 H 0.96994 * 120.00027 * 359.97438 * 13 11 10 33 33 H 1.08999 * 110.72195 * 271.93721 * 16 14 13 34 34 H 1.09000 * 110.71612 * 35.03498 * 16 14 13 35 35 H 1.09005 * 109.99074 * 218.66564 * 17 16 14 36 36 H 1.08999 * 109.77992 * 97.50274 * 17 16 14 37 37 H 1.09001 * 109.46665 * 60.00498 * 21 19 18 38 38 H 1.09000 * 109.47722 * 300.00830 * 21 19 18 39 39 H 1.08002 * 125.95922 * 179.97438 * 24 23 22 40 40 H 1.09000 * 110.36242 * 143.19455 * 28 18 17 41 41 H 1.09002 * 110.36441 * 265.51128 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 2.3303 -7.7150 0.0061 15 1 1.3774 -7.7728 0.5321 16 6 2.2021 -8.2621 -1.4402 17 6 2.3412 -9.7872 -1.2486 18 7 3.0359 -10.0050 0.0287 19 6 3.3303 -11.2045 0.5681 20 8 3.9138 -11.2653 1.6296 21 6 2.9342 -12.4702 -0.1475 22 6 3.3756 -13.6633 0.6605 23 7 2.6519 -14.2742 1.5978 24 6 3.3313 -15.2717 2.1030 25 7 4.5251 -15.3179 1.4867 26 1 5.2402 -15.9522 1.6516 27 7 4.5282 -14.2702 0.5515 28 6 3.3628 -8.6940 0.6185 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7305 0.8928 31 1 3.1245 -3.7321 -0.8872 32 1 3.8008 -6.1835 0.0051 33 1 1.2291 -8.0113 -1.8626 34 1 3.0048 -7.8787 -2.0701 35 1 2.9241 -10.2137 -2.0651 36 1 1.3533 -10.2466 -1.2164 37 1 3.4111 -12.4980 -1.1273 38 1 1.8514 -12.4950 -0.2697 39 1 2.9923 -15.9407 2.8802 40 1 3.2560 -8.7287 1.7027 41 1 4.3755 -8.3972 0.3456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737342080.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:47 Heat of formation + Delta-G solvation = 22.282008 kcal Electronic energy + Delta-G solvation = -25337.178634 eV Core-core repulsion = 21380.447597 eV Total energy + Delta-G solvation = -3956.731038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.52237 -40.48066 -39.21027 -37.51484 -34.24276 -33.71127 -32.44192 -32.14496 -31.26295 -29.84633 -29.41900 -27.74895 -25.49754 -23.91946 -23.18976 -21.76259 -21.10312 -20.50763 -19.46828 -18.70623 -17.94701 -17.61267 -17.03237 -16.34502 -15.95398 -15.87230 -15.39744 -15.14622 -14.92019 -14.81423 -14.44578 -13.99822 -13.87299 -13.66824 -13.33112 -13.11137 -12.92481 -12.63425 -12.56305 -12.47254 -12.32938 -11.98331 -11.62721 -11.09585 -11.07461 -11.02946 -10.76876 -10.63308 -10.46800 -10.31621 -9.99527 -9.82330 -9.48954 -9.10462 -9.06254 -8.96010 -8.25560 -6.51824 -6.23219 -3.93881 1.17886 2.14525 2.29508 2.30643 2.68486 2.99475 3.05665 3.21014 3.27955 3.32434 3.62785 3.67669 4.06218 4.17302 4.18987 4.28398 4.46237 4.55661 4.73097 4.89210 4.90425 4.92785 5.04609 5.12316 5.13856 5.24436 5.46137 5.52587 5.61178 5.71501 5.77446 5.84932 5.85783 5.92672 5.95764 6.11399 6.52365 6.58852 7.09602 7.58429 7.60716 7.64379 7.79781 8.34117 8.52558 9.22500 10.84257 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.043796 B = 0.001603 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.178628 B =17466.963053 C =17606.110565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.514 6.514 13 N -0.729 5.729 14 C 0.136 3.864 15 H 0.108 0.892 16 C -0.146 4.146 17 C 0.099 3.901 18 N -0.617 5.617 19 C 0.540 3.460 20 O -0.529 6.529 21 C -0.043 4.043 22 C 0.247 3.753 23 N -0.534 5.534 24 C 0.264 3.736 25 N -0.483 5.483 26 H 0.442 0.558 27 N -0.304 5.304 28 C 0.103 3.897 29 H 0.268 0.732 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.400 0.600 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.224 0.776 40 H 0.087 0.913 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 -30.834 -1.548 32.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.387 6.387 13 N -0.384 5.384 14 C 0.029 3.971 15 H 0.126 0.874 16 C -0.185 4.185 17 C -0.025 4.025 18 N -0.352 5.352 19 C 0.327 3.673 20 O -0.404 6.404 21 C -0.086 4.086 22 C -0.036 4.036 23 N -0.262 5.262 24 C -0.035 4.035 25 N -0.201 5.201 26 H 0.288 0.712 27 N -0.133 5.133 28 C -0.020 4.020 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.235 0.765 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.240 0.760 40 H 0.105 0.895 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.614 -30.825 -1.350 31.780 hybrid contribution 2.869 0.734 0.283 2.975 sum 10.483 -30.091 -1.067 31.882 Atomic orbital electron populations 1.70026 1.05952 1.27373 1.46908 1.24990 0.95025 0.99043 0.94506 0.86114 0.79585 0.81870 0.77909 1.19619 1.20561 1.20564 1.22909 0.94960 0.91624 1.58902 0.90843 1.85399 1.04810 0.96359 1.96726 1.23537 1.06687 0.95149 1.05076 1.20342 0.86490 0.86215 0.74721 1.90710 1.15313 1.85491 1.47213 1.45847 1.10088 1.04529 1.77900 1.21952 0.98250 0.81183 0.95724 0.87357 1.23106 1.04488 0.92937 0.97950 1.22164 0.97453 0.97436 0.85402 1.48271 1.58828 1.05166 1.22981 1.19816 0.79015 0.83216 0.85249 1.90757 1.41061 1.86457 1.22131 1.19842 1.04527 0.86270 0.97934 1.23272 0.88477 0.96798 0.95067 1.70370 1.33799 1.09136 1.12863 1.26100 0.83151 0.96600 0.97633 1.48077 1.16153 1.26358 1.29520 0.71222 1.77966 1.21027 1.01833 1.12516 1.22376 0.98327 0.81713 0.99633 0.92218 0.89080 0.89096 0.76507 0.88870 0.89916 0.90702 0.90505 0.86333 0.85741 0.75976 0.89467 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 11 C 0.54 9.34 7.85 -10.98 -0.09 9.25 16 12 O -0.51 -11.00 15.50 5.55 0.09 -10.91 16 13 N -0.73 -8.78 5.20 -51.73 -0.27 -9.04 16 14 C 0.14 1.44 3.43 -65.78 -0.23 1.22 16 15 H 0.11 1.39 7.54 -51.93 -0.39 0.99 16 16 C -0.15 -1.21 6.64 -24.89 -0.17 -1.38 16 17 C 0.10 0.64 6.49 -3.06 -0.02 0.62 16 18 N -0.62 -5.68 3.33 -170.51 -0.57 -6.24 16 19 C 0.54 5.96 7.84 -10.99 -0.09 5.87 16 20 O -0.53 -8.14 16.29 5.56 0.09 -8.05 16 21 C -0.04 -0.35 5.52 -29.03 -0.16 -0.51 16 22 C 0.25 2.61 6.63 -156.85 -1.04 1.57 16 23 N -0.53 -5.51 11.19 -11.97 -0.13 -5.64 16 24 C 0.26 1.65 13.13 -90.65 -1.19 0.46 16 25 N -0.48 -3.08 7.45 29.53 0.22 -2.86 16 26 H 0.44 1.06 8.96 -182.34 -1.63 -0.58 16 27 N -0.30 -3.15 12.80 32.42 0.41 -2.74 16 28 C 0.10 1.00 6.55 -2.53 -0.02 0.98 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 32 H 0.40 3.68 8.57 -40.82 -0.35 3.33 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.22 0.21 8.06 -52.49 -0.42 -0.21 16 40 H 0.09 0.97 8.04 -51.93 -0.42 0.56 16 41 H 0.07 0.64 8.00 -51.93 -0.42 0.22 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -41.11 372.06 -10.18 -51.29 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.56 Total: -1.19 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.57 Total: 2.55 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.40 Total: -51.71 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.18 Total: -18.97 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -41.11 -10.18 -51.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737342080.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.576 kcal (2) G-P(sol) polarization free energy of solvation -41.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds