Wall clock time and date at job start Tue Mar 31 2020 22:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48507 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47091 * 299.99753 * 3 2 1 6 6 H 1.48495 * 109.47430 * 60.00035 * 3 2 1 7 7 C 1.38795 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99785 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00514 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00498 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47544 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99616 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99435 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.89665 * 328.87925 * 14 13 11 16 16 C 1.55164 * 111.00510 * 92.80227 * 14 13 11 17 17 C 1.54338 * 103.01948 * 153.37672 * 16 14 13 18 18 N 1.47018 * 107.26735 * 338.14177 * 17 16 14 19 19 C 1.34776 * 125.64727 * 178.85202 * 18 17 16 20 20 O 1.21282 * 119.99940 * 179.69585 * 19 18 17 21 21 C 1.50698 * 120.00035 * 359.68700 * 19 18 17 22 22 C 1.50706 * 109.47294 * 180.02562 * 21 19 18 23 23 N 1.33243 * 125.52280 * 90.00034 * 22 21 19 24 24 C 1.30836 * 109.82576 * 180.02562 * 23 22 21 25 25 N 1.34429 * 108.07502 * 0.02562 * 24 23 22 26 26 H 0.97002 * 126.81744 * 180.02562 * 25 24 23 27 27 N 1.30711 * 125.52822 * 269.69858 * 22 21 19 28 28 C 1.47429 * 108.70306 * 358.58680 * 18 17 16 29 29 H 0.97002 * 119.99760 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47006 * 59.99625 * 10 9 7 31 31 H 1.09007 * 109.47091 * 300.00454 * 10 9 7 32 32 H 0.96994 * 120.00027 * 359.97438 * 13 11 10 33 33 H 1.08999 * 110.72195 * 271.93721 * 16 14 13 34 34 H 1.09000 * 110.71612 * 35.03498 * 16 14 13 35 35 H 1.09005 * 109.99074 * 218.66564 * 17 16 14 36 36 H 1.08999 * 109.77992 * 97.50274 * 17 16 14 37 37 H 1.09001 * 109.46665 * 60.00498 * 21 19 18 38 38 H 1.09000 * 109.47722 * 300.00830 * 21 19 18 39 39 H 1.08002 * 125.95922 * 179.97438 * 24 23 22 40 40 H 1.09000 * 110.36242 * 143.19455 * 28 18 17 41 41 H 1.09002 * 110.36441 * 265.51128 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 2.3303 -7.7150 0.0061 15 1 1.3774 -7.7728 0.5321 16 6 2.2021 -8.2621 -1.4402 17 6 2.3412 -9.7872 -1.2486 18 7 3.0359 -10.0050 0.0287 19 6 3.3303 -11.2045 0.5681 20 8 3.9138 -11.2653 1.6296 21 6 2.9342 -12.4702 -0.1475 22 6 3.3756 -13.6633 0.6605 23 7 2.6519 -14.2742 1.5978 24 6 3.3313 -15.2717 2.1030 25 7 4.5251 -15.3179 1.4867 26 1 5.2402 -15.9522 1.6516 27 7 4.5282 -14.2702 0.5515 28 6 3.3628 -8.6940 0.6185 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7305 0.8928 31 1 3.1245 -3.7321 -0.8872 32 1 3.8008 -6.1835 0.0051 33 1 1.2291 -8.0113 -1.8626 34 1 3.0048 -7.8787 -2.0701 35 1 2.9241 -10.2137 -2.0651 36 1 1.3533 -10.2466 -1.2164 37 1 3.4111 -12.4980 -1.1273 38 1 1.8514 -12.4950 -0.2697 39 1 2.9923 -15.9407 2.8802 40 1 3.2560 -8.7287 1.7027 41 1 4.3755 -8.3972 0.3456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737342080.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:46 Heat of formation + Delta-G solvation = -9.498451 kcal Electronic energy + Delta-G solvation = -25338.556739 eV Core-core repulsion = 21380.447597 eV Total energy + Delta-G solvation = -3958.109142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.08849 -41.36505 -40.42238 -38.48511 -35.35927 -34.57083 -34.33477 -32.79319 -32.23133 -30.69676 -30.40717 -28.70907 -27.62686 -24.68594 -23.72149 -22.66285 -21.82769 -21.68830 -20.18388 -19.84221 -19.22824 -18.43768 -18.10050 -17.56291 -16.87148 -16.83329 -16.61388 -16.37458 -16.13498 -15.96837 -15.61556 -15.11892 -14.79353 -14.58244 -14.49284 -14.30717 -13.84387 -13.76651 -13.64806 -13.17727 -13.14515 -13.04882 -12.92803 -12.85879 -12.66351 -12.53385 -11.83422 -11.69481 -11.33166 -11.14699 -11.10299 -11.02259 -10.96889 -10.65723 -10.25294 -10.15809 -9.75658 -8.64473 -8.33757 -6.11086 0.62310 1.25511 1.42231 1.43403 1.51057 1.54796 1.60225 1.63565 1.84206 2.03233 2.28079 2.40554 3.00751 3.14654 3.29864 3.34359 3.54979 3.64942 3.81497 3.95485 4.00485 4.15011 4.22031 4.27683 4.33554 4.40683 4.53042 4.54392 4.60587 4.78625 4.82504 5.00419 5.12319 5.15678 5.22149 5.33369 5.43809 5.46798 6.21364 6.25265 6.35396 6.48410 7.00913 7.08173 7.08512 7.23078 8.75609 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.043796 B = 0.001603 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.178628 B =17466.963053 C =17606.110565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.131 4.131 11 C 0.540 3.460 12 O -0.560 6.560 13 N -0.703 5.703 14 C 0.133 3.867 15 H 0.083 0.917 16 C -0.139 4.139 17 C 0.100 3.900 18 N -0.614 5.614 19 C 0.537 3.463 20 O -0.581 6.581 21 C -0.039 4.039 22 C 0.229 3.771 23 N -0.577 5.577 24 C 0.274 3.726 25 N -0.475 5.475 26 H 0.458 0.542 27 N -0.338 5.338 28 C 0.108 3.892 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.418 0.582 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.271 0.729 40 H 0.067 0.933 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.341 -32.046 -2.432 34.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.326 3.674 12 O -0.438 6.438 13 N -0.357 5.357 14 C 0.027 3.973 15 H 0.102 0.898 16 C -0.178 4.178 17 C -0.022 4.022 18 N -0.348 5.348 19 C 0.326 3.674 20 O -0.461 6.461 21 C -0.081 4.081 22 C -0.054 4.054 23 N -0.306 5.306 24 C -0.024 4.024 25 N -0.194 5.194 26 H 0.307 0.693 27 N -0.169 5.169 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.256 0.744 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.286 0.714 40 H 0.086 0.914 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.741 -32.087 -2.262 33.609 hybrid contribution 2.274 0.944 0.607 2.536 sum 12.016 -31.142 -1.655 33.421 Atomic orbital electron populations 1.70186 1.07941 1.28514 1.48116 1.26100 0.95939 1.03255 0.93786 0.84920 0.78627 0.76462 0.78030 1.18065 1.19905 1.20095 1.23249 0.95384 0.92079 1.58682 0.89894 1.85562 1.10477 0.99164 1.97047 1.23379 1.03607 0.94230 1.06969 1.20006 0.86171 0.86484 0.74701 1.90703 1.17297 1.85953 1.49824 1.45522 1.10414 1.04105 1.75677 1.21976 0.97425 0.80246 0.97666 0.89836 1.23060 1.04588 0.94214 0.95935 1.22364 0.98767 0.96149 0.84898 1.48321 1.58347 1.04484 1.23657 1.20343 0.78121 0.84241 0.84681 1.90726 1.43654 1.87215 1.24507 1.19965 1.05895 0.83919 0.98296 1.23694 0.88658 0.97489 0.95554 1.70359 1.35361 1.10903 1.13975 1.27002 0.82360 0.95789 0.97230 1.48028 1.16891 1.25825 1.28704 0.69337 1.77847 1.21483 1.03248 1.14287 1.22253 0.98735 0.82007 0.98543 0.92019 0.87300 0.86852 0.74385 0.89700 0.88577 0.87476 0.88871 0.83622 0.83774 0.71352 0.91407 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.55 13.22 21.65 0.29 -55.27 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -30.79 9.50 67.95 0.65 -30.14 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.14 20.57 -56.49 -1.16 -9.30 16 10 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 11 C 0.54 18.59 7.85 87.66 0.69 19.28 16 12 O -0.56 -24.55 15.50 -3.04 -0.05 -24.60 16 13 N -0.70 -15.87 5.20 -435.97 -2.27 -18.14 16 14 C 0.13 2.70 3.43 46.39 0.16 2.86 16 15 H 0.08 2.18 7.54 -2.39 -0.02 2.16 16 16 C -0.14 -2.02 6.64 31.79 0.21 -1.80 16 17 C 0.10 1.00 6.49 86.73 0.56 1.56 16 18 N -0.61 -10.26 3.33 -811.76 -2.70 -12.96 16 19 C 0.54 11.35 7.84 87.66 0.69 12.04 16 20 O -0.58 -18.10 16.29 -3.04 -0.05 -18.15 16 21 C -0.04 -0.57 5.52 29.10 0.16 -0.41 16 22 C 0.23 4.66 6.63 138.63 0.92 5.58 16 23 N -0.58 -11.41 11.19 -191.79 -2.15 -13.55 16 24 C 0.27 2.96 13.13 180.36 2.37 5.33 16 25 N -0.47 -5.43 7.45 -60.49 -0.45 -5.88 16 26 H 0.46 1.51 8.96 -213.10 -1.91 -0.40 16 27 N -0.34 -6.75 12.80 -51.33 -0.66 -7.41 16 28 C 0.11 1.98 6.55 86.85 0.57 2.55 16 29 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 30 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 31 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 32 H 0.42 6.60 8.57 -92.71 -0.79 5.80 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.27 -0.30 8.06 -2.91 -0.02 -0.32 16 40 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 41 H 0.09 1.38 8.00 -2.39 -0.02 1.36 16 Total: -1.00 -94.18 372.06 -0.90 -95.08 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -1.61 Total: 11.26 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 7.88 Total: 13.60 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -7.93 Total: -113.20 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -0.10 Total: -42.75 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -94.18 -0.90 -95.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737342080.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.579 kcal (2) G-P(sol) polarization free energy of solvation -94.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds