Wall clock time and date at job start Tue Mar 31 2020 22:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33325 * 126.81357 * 2 1 4 4 N 1.28505 * 109.43576 * 180.02562 * 3 2 1 5 5 N 1.28716 * 110.64461 * 359.75283 * 4 3 2 6 6 H 0.96992 * 126.03537 * 180.25866 * 5 4 3 7 7 C 1.37001 * 126.81598 * 180.02562 * 2 1 3 8 8 C 1.47241 * 127.18719 * 359.93255 * 7 2 1 9 9 O 1.21618 * 119.99768 * 359.97438 * 8 7 2 10 10 N 1.34769 * 119.99855 * 180.02562 * 8 7 2 11 11 C 1.46503 * 119.99974 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47355 * 184.97642 * 11 10 8 13 13 H 1.09003 * 112.78279 * 314.88665 * 12 11 10 14 14 C 1.53755 * 113.55226 * 85.74085 * 12 11 10 15 15 C 1.53500 * 83.25862 * 140.99071 * 14 12 11 16 16 N 1.47070 * 113.46947 * 184.10333 * 12 11 10 17 17 C 1.34769 * 136.05848 * 38.14049 * 16 12 11 18 18 O 1.21288 * 119.99831 * 354.63927 * 17 16 12 19 19 C 1.50698 * 120.00200 * 174.64564 * 17 16 12 20 20 S 1.81004 * 109.47177 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00009 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00305 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00055 * 180.27708 * 21 20 19 24 24 N 1.31633 * 119.99584 * 359.72013 * 23 21 20 25 25 Si 1.86800 * 120.00095 * 179.72403 * 23 21 20 26 26 H 1.48498 * 109.47311 * 59.99566 * 25 23 21 27 27 H 1.48501 * 109.47123 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46653 * 299.99683 * 25 23 21 29 29 H 1.09000 * 109.47612 * 269.96229 * 1 2 3 30 30 H 1.09007 * 109.46973 * 29.96298 * 1 2 3 31 31 H 1.08996 * 109.47139 * 149.95977 * 1 2 3 32 32 H 0.97000 * 120.00235 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47114 * 64.97644 * 11 10 8 34 34 H 1.08995 * 109.47290 * 304.97639 * 11 10 8 35 35 H 1.08998 * 114.39379 * 27.43039 * 14 12 11 36 36 H 1.09008 * 114.08930 * 254.53003 * 14 12 11 37 37 H 1.08998 * 113.46473 * 218.98786 * 15 14 12 38 38 H 1.08996 * 113.52271 * 88.55254 * 15 14 12 39 39 H 1.08996 * 109.47639 * 59.99297 * 19 17 16 40 40 H 1.09001 * 109.46871 * 299.99064 * 19 17 16 41 41 H 0.96997 * 119.99362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6057 -0.6015 0.0043 6 1 4.4212 -1.1264 0.0085 7 6 2.3280 -1.0968 -0.0005 8 6 1.9222 -2.5122 0.0003 9 8 0.7422 -2.8064 0.0019 10 7 2.8585 -3.4815 0.0001 11 6 2.4548 -4.8899 0.0015 12 6 3.6957 -5.7760 0.1262 13 1 4.5075 -5.4602 -0.5291 14 6 4.1386 -6.0121 1.5795 15 6 4.4260 -7.4315 1.0708 16 7 3.3995 -7.2141 0.0402 17 6 2.5609 -7.9912 -0.6733 18 8 1.7434 -7.4831 -1.4112 19 6 2.6389 -9.4914 -0.5542 20 16 1.3924 -10.2474 -1.6271 21 6 1.6999 -11.9512 -1.3000 22 1 2.4773 -12.2362 -0.6065 23 6 0.9474 -12.9273 -1.9383 24 7 0.0003 -12.5799 -2.7839 25 14 1.2785 -14.7338 -1.5974 26 1 1.0739 -15.0106 -0.1528 27 1 0.3460 -15.5676 -2.3976 28 1 2.6786 -15.0593 -1.9702 29 1 -0.3634 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5144 32 1 3.7997 -3.2468 -0.0008 33 1 1.9360 -5.1200 -0.9291 34 1 1.7891 -5.0762 0.8442 35 1 3.3325 -5.9541 2.3108 36 1 5.0280 -5.4528 1.8700 37 1 4.1640 -8.2105 1.7867 38 1 5.4301 -7.5530 0.6645 39 1 2.4539 -9.7840 0.4793 40 1 3.6307 -9.8287 -0.8554 41 1 -0.5259 -13.2620 -3.2297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738698183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:28 Heat of formation + Delta-G solvation = 63.998181 kcal Electronic energy + Delta-G solvation = -25743.120939 eV Core-core repulsion = 21788.198851 eV Total energy + Delta-G solvation = -3954.922089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.83947 -40.78235 -39.69230 -37.65593 -35.44551 -34.25118 -32.85685 -32.47255 -30.91878 -29.26772 -28.30666 -27.83815 -25.52391 -24.81834 -23.63817 -22.44429 -22.15126 -21.21134 -19.77931 -18.83642 -17.79602 -17.28660 -16.98179 -16.81554 -16.41816 -15.71506 -15.54450 -15.26887 -14.84327 -14.58588 -14.26043 -14.15694 -13.97484 -13.81530 -13.40464 -13.09325 -13.04038 -12.79958 -12.58356 -12.31985 -12.27781 -12.05569 -11.79865 -11.60529 -11.12713 -11.07391 -11.04002 -11.02072 -10.81119 -10.56096 -9.88671 -9.83456 -9.62411 -9.36883 -9.10273 -8.80516 -8.30285 -6.55971 -6.25689 -3.97289 0.40299 1.81763 1.90976 2.24260 2.61520 2.75307 2.94174 3.20221 3.20465 3.25855 3.48383 3.79263 3.89483 4.08764 4.15760 4.30947 4.43903 4.51650 4.57486 4.61284 4.79060 5.00165 5.09403 5.19004 5.27106 5.31821 5.36648 5.42309 5.46163 5.53711 5.65007 5.68335 5.72824 5.84403 5.94414 6.01186 6.06308 6.08111 6.79338 7.53955 7.54838 7.68224 7.79434 8.30506 8.40070 9.19261 10.81647 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.001951 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.651292 B =14346.033715 C =15179.558055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.065 3.935 3 N -0.268 5.268 4 N -0.043 5.043 5 N -0.376 5.376 6 H 0.450 0.550 7 C -0.072 4.072 8 C 0.595 3.405 9 O -0.500 6.500 10 N -0.721 5.721 11 C 0.113 3.887 12 C 0.122 3.878 13 H 0.095 0.905 14 C -0.152 4.152 15 C 0.101 3.899 16 N -0.646 5.646 17 C 0.562 3.438 18 O -0.507 6.507 19 C -0.145 4.145 20 S -0.058 6.058 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.920 3.080 26 H -0.274 1.274 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.393 0.607 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.520 21.193 10.445 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 N -0.135 5.135 4 N -0.025 5.025 5 N -0.104 5.104 6 H 0.296 0.704 7 C -0.205 4.205 8 C 0.378 3.622 9 O -0.372 6.372 10 N -0.374 5.374 11 C -0.011 4.011 12 C 0.017 3.983 13 H 0.113 0.887 14 C -0.190 4.190 15 C -0.022 4.022 16 N -0.386 5.386 17 C 0.352 3.648 18 O -0.380 6.380 19 C -0.295 4.295 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.746 3.254 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.226 0.774 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.753 22.826 9.066 26.812 hybrid contribution 1.960 -3.052 0.994 3.761 sum 12.713 19.774 10.061 25.571 Atomic orbital electron populations 1.20372 0.84588 1.04739 1.04025 1.22401 0.98778 0.86850 0.99468 1.74986 0.95120 1.25933 1.17503 1.78202 1.16128 0.92146 1.16027 1.45447 1.08712 1.07056 1.49141 0.70363 1.22086 0.85027 0.96419 1.16998 1.16655 0.86038 0.82021 0.77490 1.90907 1.16330 1.81635 1.48312 1.45709 1.08873 1.06853 1.75925 1.21743 0.96746 0.77231 1.05343 1.22817 0.95998 0.83160 0.96328 0.88731 1.23658 1.02660 0.97000 0.95703 1.22888 0.92268 0.97878 0.89179 1.49756 1.38994 1.06892 1.42990 1.20045 0.79010 0.88208 0.77585 1.90733 1.35320 1.74861 1.37092 1.23480 1.06892 0.92681 1.06465 1.85437 1.41339 1.02239 1.54139 1.22805 1.23454 0.91020 1.31253 0.90968 1.25001 0.94466 0.99637 0.94463 1.70006 1.19806 1.34320 1.26033 0.86212 0.78303 0.82409 0.78508 1.19909 1.20761 1.19940 0.89732 0.90086 0.88532 0.77356 0.88756 0.89806 0.88276 0.89287 0.89857 0.89687 0.89269 0.89270 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.93 36.01 0.36 -0.30 16 2 C 0.06 0.64 7.30 -82.39 -0.60 0.04 16 3 N -0.27 -2.92 12.35 33.51 0.41 -2.50 16 4 N -0.04 -0.40 13.35 60.35 0.81 0.41 16 5 N -0.38 -2.25 6.97 33.31 0.23 -2.02 16 6 H 0.45 0.65 8.32 -190.34 -1.58 -0.94 16 7 C -0.07 -0.61 7.17 -82.33 -0.59 -1.20 16 8 C 0.59 5.77 7.81 -12.61 -0.10 5.67 16 9 O -0.50 -6.82 14.99 5.26 0.08 -6.74 16 10 N -0.72 -5.05 5.55 -61.45 -0.34 -5.39 16 11 C 0.11 1.15 5.40 -4.04 -0.02 1.13 16 12 C 0.12 1.00 4.09 -72.26 -0.30 0.71 16 13 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 14 C -0.15 -0.82 8.03 -26.08 -0.21 -1.03 16 15 C 0.10 0.77 8.41 -8.50 -0.07 0.70 16 16 N -0.65 -7.96 3.56 -177.27 -0.63 -8.59 16 17 C 0.56 10.16 8.02 -10.99 -0.09 10.07 16 18 O -0.51 -11.16 15.24 5.55 0.08 -11.08 16 19 C -0.14 -2.86 5.99 36.00 0.22 -2.64 16 20 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 21 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 22 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 25 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.91 6.62 -51.93 -0.34 0.57 16 32 H 0.39 1.14 7.74 -40.82 -0.32 0.83 16 33 H 0.09 1.35 7.05 -51.93 -0.37 0.99 16 34 H 0.08 0.97 7.90 -51.93 -0.41 0.55 16 35 H 0.10 0.60 7.97 -51.93 -0.41 0.18 16 36 H 0.09 0.22 8.14 -51.92 -0.42 -0.21 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -38.61 370.65 -7.84 -46.44 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -6.36 Total: -3.58 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.20 Total: 0.33 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 1.21 Total: -43.30 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.16 Total: -17.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.61 -7.84 -46.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738698183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.443 kcal (2) G-P(sol) polarization free energy of solvation -38.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds