Wall clock time and date at job start Tue Mar 31 2020 22:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33325 * 126.81357 * 2 1 4 4 N 1.28505 * 109.43576 * 180.02562 * 3 2 1 5 5 N 1.28716 * 110.64461 * 359.75283 * 4 3 2 6 6 H 0.96992 * 126.03537 * 180.25866 * 5 4 3 7 7 C 1.37001 * 126.81598 * 180.02562 * 2 1 3 8 8 C 1.47241 * 127.18719 * 359.93255 * 7 2 1 9 9 O 1.21618 * 119.99768 * 359.97438 * 8 7 2 10 10 N 1.34769 * 119.99855 * 180.02562 * 8 7 2 11 11 C 1.46503 * 119.99974 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47355 * 184.97642 * 11 10 8 13 13 H 1.09003 * 112.78279 * 314.88665 * 12 11 10 14 14 C 1.53755 * 113.55226 * 85.74085 * 12 11 10 15 15 C 1.53500 * 83.25862 * 140.99071 * 14 12 11 16 16 N 1.47070 * 113.46947 * 184.10333 * 12 11 10 17 17 C 1.34769 * 136.05848 * 38.14049 * 16 12 11 18 18 O 1.21288 * 119.99831 * 354.63927 * 17 16 12 19 19 C 1.50698 * 120.00200 * 174.64564 * 17 16 12 20 20 S 1.81004 * 109.47177 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00009 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00305 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00055 * 180.27708 * 21 20 19 24 24 N 1.31633 * 119.99584 * 359.72013 * 23 21 20 25 25 Si 1.86800 * 120.00095 * 179.72403 * 23 21 20 26 26 H 1.48498 * 109.47311 * 59.99566 * 25 23 21 27 27 H 1.48501 * 109.47123 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46653 * 299.99683 * 25 23 21 29 29 H 1.09000 * 109.47612 * 269.96229 * 1 2 3 30 30 H 1.09007 * 109.46973 * 29.96298 * 1 2 3 31 31 H 1.08996 * 109.47139 * 149.95977 * 1 2 3 32 32 H 0.97000 * 120.00235 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47114 * 64.97644 * 11 10 8 34 34 H 1.08995 * 109.47290 * 304.97639 * 11 10 8 35 35 H 1.08998 * 114.39379 * 27.43039 * 14 12 11 36 36 H 1.09008 * 114.08930 * 254.53003 * 14 12 11 37 37 H 1.08998 * 113.46473 * 218.98786 * 15 14 12 38 38 H 1.08996 * 113.52271 * 88.55254 * 15 14 12 39 39 H 1.08996 * 109.47639 * 59.99297 * 19 17 16 40 40 H 1.09001 * 109.46871 * 299.99064 * 19 17 16 41 41 H 0.96997 * 119.99362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6057 -0.6015 0.0043 6 1 4.4212 -1.1264 0.0085 7 6 2.3280 -1.0968 -0.0005 8 6 1.9222 -2.5122 0.0003 9 8 0.7422 -2.8064 0.0019 10 7 2.8585 -3.4815 0.0001 11 6 2.4548 -4.8899 0.0015 12 6 3.6957 -5.7760 0.1262 13 1 4.5075 -5.4602 -0.5291 14 6 4.1386 -6.0121 1.5795 15 6 4.4260 -7.4315 1.0708 16 7 3.3995 -7.2141 0.0402 17 6 2.5609 -7.9912 -0.6733 18 8 1.7434 -7.4831 -1.4112 19 6 2.6389 -9.4914 -0.5542 20 16 1.3924 -10.2474 -1.6271 21 6 1.6999 -11.9512 -1.3000 22 1 2.4773 -12.2362 -0.6065 23 6 0.9474 -12.9273 -1.9383 24 7 0.0003 -12.5799 -2.7839 25 14 1.2785 -14.7338 -1.5974 26 1 1.0739 -15.0106 -0.1528 27 1 0.3460 -15.5676 -2.3976 28 1 2.6786 -15.0593 -1.9702 29 1 -0.3634 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5144 32 1 3.7997 -3.2468 -0.0008 33 1 1.9360 -5.1200 -0.9291 34 1 1.7891 -5.0762 0.8442 35 1 3.3325 -5.9541 2.3108 36 1 5.0280 -5.4528 1.8700 37 1 4.1640 -8.2105 1.7867 38 1 5.4301 -7.5530 0.6645 39 1 2.4539 -9.7840 0.4793 40 1 3.6307 -9.8287 -0.8554 41 1 -0.5259 -13.2620 -3.2297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738698183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:27 Heat of formation + Delta-G solvation = 31.991652 kcal Electronic energy + Delta-G solvation = -25744.508847 eV Core-core repulsion = 21788.198851 eV Total energy + Delta-G solvation = -3956.309996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.53152 -41.66755 -40.57996 -38.90547 -36.25582 -34.96473 -34.60596 -33.58568 -32.18039 -30.05669 -29.46417 -28.58478 -27.65989 -25.54129 -24.33627 -23.25348 -22.96327 -21.97033 -20.58418 -20.04193 -19.35854 -18.08836 -17.95899 -17.67165 -17.34682 -16.90119 -16.75317 -16.59923 -16.27512 -15.82639 -15.60401 -15.10991 -14.87586 -14.71164 -14.51196 -14.06007 -13.94431 -13.83020 -13.72663 -13.40976 -13.17781 -13.03688 -12.94532 -12.87478 -12.65633 -12.43389 -12.32997 -11.78515 -11.76431 -11.70174 -11.39741 -11.14630 -10.89248 -10.58197 -10.31143 -10.24284 -9.79474 -8.70426 -8.36323 -6.15517 -0.30110 1.07075 1.14527 1.31601 1.40889 1.42902 1.51811 1.55111 1.69118 1.83926 2.11657 2.25959 2.97673 3.13724 3.17959 3.32710 3.42488 3.61745 3.69035 3.75717 3.88130 3.98068 4.01506 4.23611 4.43765 4.47180 4.55826 4.60156 4.65741 4.71794 4.73597 4.85616 4.91233 4.97831 5.11054 5.26550 5.32648 5.39118 5.63358 6.17191 6.17418 6.59160 6.84277 7.04441 7.09005 7.10363 8.72650 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.001951 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.651292 B =14346.033715 C =15179.558055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.051 3.949 3 N -0.295 5.295 4 N -0.048 5.048 5 N -0.344 5.344 6 H 0.471 0.529 7 C -0.068 4.068 8 C 0.598 3.402 9 O -0.545 6.545 10 N -0.697 5.697 11 C 0.121 3.879 12 C 0.119 3.881 13 H 0.130 0.870 14 C -0.126 4.126 15 C 0.093 3.907 16 N -0.650 5.650 17 C 0.557 3.443 18 O -0.563 6.563 19 C -0.118 4.118 20 S -0.154 6.154 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.261 1.261 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.418 0.582 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.363 21.250 12.630 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.161 5.161 4 N -0.030 5.030 5 N -0.076 5.076 6 H 0.322 0.678 7 C -0.203 4.203 8 C 0.382 3.618 9 O -0.420 6.420 10 N -0.350 5.350 11 C -0.003 4.003 12 C 0.016 3.984 13 H 0.147 0.853 14 C -0.163 4.163 15 C -0.028 4.028 16 N -0.387 5.387 17 C 0.346 3.654 18 O -0.441 6.441 19 C -0.269 4.269 20 S 0.073 5.927 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.185 1.185 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.256 0.744 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.733 22.919 11.307 29.499 hybrid contribution 0.893 -2.937 0.391 3.095 sum 15.626 19.982 11.699 27.934 Atomic orbital electron populations 1.20363 0.84211 1.04507 1.04482 1.22672 0.99470 0.87207 0.99644 1.74981 0.95675 1.26638 1.18849 1.78127 1.15647 0.93135 1.16119 1.45372 1.08837 1.06332 1.47013 0.67771 1.21759 0.85793 0.95373 1.17370 1.16778 0.85658 0.82657 0.76746 1.90899 1.18391 1.82307 1.50409 1.45368 1.09863 1.05175 1.74605 1.21440 0.97604 0.79081 1.02219 1.23278 0.95474 0.80078 0.99554 0.85272 1.23621 1.04198 0.95518 0.92979 1.23366 0.92087 0.99521 0.87807 1.49792 1.38250 1.08866 1.41833 1.19664 0.79889 0.87819 0.78007 1.90714 1.38042 1.75469 1.39908 1.23264 1.04579 0.94071 1.04989 1.85632 1.45707 1.03883 1.57434 1.23151 1.23714 0.91152 1.31401 0.89864 1.26169 0.93962 1.05182 0.93957 1.70185 1.21133 1.36052 1.27400 0.84985 0.78641 0.75429 0.78824 1.18591 1.20444 1.18504 0.88955 0.89046 0.89940 0.74442 0.93433 0.91541 0.88879 0.84254 0.89624 0.86643 0.87836 0.87577 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.93 71.24 0.71 -0.62 16 2 C 0.05 0.98 7.30 42.04 0.31 1.29 16 3 N -0.30 -6.17 12.35 -47.88 -0.59 -6.76 16 4 N -0.05 -0.80 13.35 37.02 0.49 -0.31 16 5 N -0.34 -3.27 6.97 -48.52 -0.34 -3.60 16 6 H 0.47 -0.40 8.32 -219.91 -1.83 -2.23 16 7 C -0.07 -1.08 7.17 40.41 0.29 -0.79 16 8 C 0.60 11.24 7.81 86.61 0.68 11.91 16 9 O -0.54 -15.49 14.99 -4.09 -0.06 -15.55 16 10 N -0.70 -8.45 5.55 -466.58 -2.59 -11.04 16 11 C 0.12 2.41 5.40 86.38 0.47 2.87 16 12 C 0.12 1.59 4.09 41.88 0.17 1.76 16 13 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 14 C -0.13 -0.72 8.03 31.02 0.25 -0.47 16 15 C 0.09 1.00 8.41 83.18 0.70 1.70 16 16 N -0.65 -14.75 3.56 -833.15 -2.97 -17.71 16 17 C 0.56 20.37 8.02 87.66 0.70 21.07 16 18 O -0.56 -26.20 15.24 -3.05 -0.05 -26.24 16 19 C -0.12 -4.67 5.99 71.24 0.43 -4.24 16 20 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 21 C -0.55 -31.13 9.50 67.96 0.65 -30.48 16 22 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 23 C 0.01 0.69 5.49 84.86 0.47 1.15 16 24 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 25 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.31 8.14 -2.38 -0.02 1.30 16 31 H 0.08 1.66 6.62 -2.39 -0.02 1.65 16 32 H 0.42 0.80 7.74 -92.71 -0.72 0.08 16 33 H 0.05 1.45 7.05 -2.39 -0.02 1.43 16 34 H 0.07 1.56 7.90 -2.39 -0.02 1.54 16 35 H 0.09 0.75 7.97 -2.39 -0.02 0.73 16 36 H 0.14 -0.40 8.14 -2.38 -0.02 -0.42 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 3.74 8.14 -2.40 -0.02 3.72 16 40 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -92.31 370.65 -0.59 -92.90 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -1.45 Total: 3.53 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.81 Total: 5.16 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -5.71 Total: -95.34 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.11 Total: -41.79 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -92.31 -0.59 -92.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738698183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.888 kcal (2) G-P(sol) polarization free energy of solvation -92.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds