Wall clock time and date at job start Tue Mar 31 2020 22:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33327 * 126.81189 * 2 1 4 4 N 1.28516 * 109.43462 * 180.02562 * 3 2 1 5 5 N 1.28716 * 110.63963 * 359.75485 * 4 3 2 6 6 H 0.97000 * 126.03362 * 180.26458 * 5 4 3 7 7 C 1.37002 * 126.81275 * 180.02562 * 2 1 3 8 8 C 1.47231 * 127.19308 * 359.92768 * 7 2 1 9 9 O 1.21619 * 119.99749 * 359.97438 * 8 7 2 10 10 N 1.34771 * 120.00370 * 180.02562 * 8 7 2 11 11 C 1.46501 * 120.00153 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47074 * 185.10805 * 11 10 8 13 13 H 1.09001 * 112.96861 * 308.95469 * 12 11 10 14 14 C 1.53938 * 113.76959 * 177.26913 * 12 11 10 15 15 C 1.53945 * 86.29540 * 221.98380 * 14 12 11 16 16 N 1.47581 * 113.86830 * 80.72644 * 12 11 10 17 17 C 1.34774 * 134.49659 * 318.95352 * 16 12 11 18 18 O 1.21287 * 119.99937 * 4.99790 * 17 16 12 19 19 C 1.50703 * 120.00175 * 184.99553 * 17 16 12 20 20 S 1.81006 * 109.46932 * 179.97438 * 19 17 16 21 21 C 1.76202 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00084 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99996 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99988 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00148 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47140 * 60.00284 * 25 23 21 27 27 H 1.48503 * 109.47256 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47028 * 300.00393 * 25 23 21 29 29 H 1.09000 * 109.46927 * 269.95933 * 1 2 3 30 30 H 1.09001 * 109.47046 * 29.95722 * 1 2 3 31 31 H 1.08996 * 109.46944 * 149.95378 * 1 2 3 32 32 H 0.97006 * 119.99774 * 359.97438 * 10 8 7 33 33 H 1.08995 * 109.46853 * 65.10980 * 11 10 8 34 34 H 1.08995 * 109.46866 * 305.10561 * 11 10 8 35 35 H 1.09001 * 113.74228 * 336.33086 * 14 12 11 36 36 H 1.09003 * 113.74023 * 107.63483 * 14 12 11 37 37 H 1.08990 * 113.77179 * 137.90784 * 15 14 12 38 38 H 1.08998 * 113.76501 * 269.19798 * 15 14 12 39 39 H 1.08998 * 109.47173 * 299.99732 * 19 17 16 40 40 H 1.08997 * 109.47122 * 60.00336 * 19 17 16 41 41 H 0.96999 * 120.00312 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 -0.0005 5 7 3.6057 -0.6015 0.0042 6 1 4.4213 -1.1265 0.0085 7 6 2.3280 -1.0968 -0.0005 8 6 1.9223 -2.5121 0.0004 9 8 0.7422 -2.8064 0.0021 10 7 2.8585 -3.4816 0.0002 11 6 2.4548 -4.8899 0.0016 12 6 3.6955 -5.7760 0.1296 13 1 4.4719 -5.5279 -0.5942 14 6 3.3782 -7.2802 0.2082 15 6 4.4557 -7.3484 1.3056 16 7 4.1929 -5.9109 1.5125 17 6 4.3458 -5.0624 2.5484 18 8 3.9521 -3.9187 2.4586 19 6 5.0059 -5.5346 3.8182 20 16 5.0627 -4.1740 5.0106 21 6 5.8585 -4.9822 6.3591 22 1 6.1474 -6.0192 6.2728 23 6 6.1151 -4.2856 7.5319 24 7 5.7635 -3.0215 7.6370 25 14 6.9593 -5.1421 8.9613 26 1 8.2964 -5.6233 8.5301 27 1 7.1160 -4.1873 10.0879 28 1 6.1363 -6.2967 9.4024 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3633 -0.8895 -0.5145 32 1 3.7997 -3.2468 -0.0008 33 1 1.9381 -5.1206 -0.9299 34 1 1.7873 -5.0756 0.8431 35 1 2.3723 -7.4984 0.5667 36 1 3.6373 -7.8312 -0.6960 37 1 4.1786 -7.9724 2.1552 38 1 5.4549 -7.5641 0.9274 39 1 4.4349 -6.3627 4.2383 40 1 6.0203 -5.8672 3.5984 41 1 5.9424 -2.5348 8.4567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738698184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:30 Heat of formation + Delta-G solvation = 29.310770 kcal Electronic energy + Delta-G solvation = -26709.631402 eV Core-core repulsion = 22753.205155 eV Total energy + Delta-G solvation = -3956.426248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.50927 -41.51452 -40.40385 -38.70433 -36.08975 -34.91179 -34.62961 -33.55212 -32.12552 -30.01818 -29.36394 -28.57130 -27.67708 -25.56093 -24.36776 -23.02557 -22.92403 -21.83108 -20.50196 -20.02808 -19.30415 -18.09452 -17.83894 -17.64931 -17.21205 -16.98620 -16.90912 -16.57445 -16.14484 -15.70285 -15.67343 -15.01894 -14.83909 -14.67048 -14.45015 -14.05794 -13.78851 -13.71550 -13.46020 -13.29357 -13.15852 -13.05589 -13.02082 -12.90174 -12.65530 -12.34224 -12.32141 -12.07211 -11.77738 -11.70520 -11.29308 -11.16911 -10.72748 -10.53857 -10.32097 -10.14630 -9.70102 -8.70479 -8.38907 -6.16977 -0.26311 1.08030 1.19857 1.35527 1.40038 1.40861 1.50360 1.61213 1.78693 1.96695 2.06611 2.24379 2.95512 3.14772 3.20411 3.40524 3.51613 3.67355 3.70388 3.77653 3.92117 4.03906 4.18976 4.24966 4.40437 4.45371 4.49942 4.57968 4.71921 4.73032 4.75771 4.89954 5.03313 5.06643 5.15762 5.28033 5.36279 5.36628 5.55451 6.14577 6.19830 6.61524 6.86727 7.02546 7.09015 7.16620 8.69765 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003301 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.498339 B = 8479.005404 C =10616.623611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.045 3.955 3 N -0.294 5.294 4 N -0.059 5.059 5 N -0.352 5.352 6 H 0.464 0.536 7 C -0.071 4.071 8 C 0.601 3.399 9 O -0.546 6.546 10 N -0.696 5.696 11 C 0.121 3.879 12 C 0.119 3.881 13 H 0.129 0.871 14 C -0.119 4.119 15 C 0.095 3.905 16 N -0.648 5.648 17 C 0.551 3.449 18 O -0.552 6.552 19 C -0.121 4.121 20 S -0.147 6.147 21 C -0.549 4.549 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.260 1.260 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.404 0.596 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -10.646 -22.220 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 N -0.160 5.160 4 N -0.040 5.040 5 N -0.081 5.081 6 H 0.313 0.687 7 C -0.206 4.206 8 C 0.385 3.615 9 O -0.422 6.422 10 N -0.345 5.345 11 C -0.003 4.003 12 C 0.017 3.983 13 H 0.146 0.854 14 C -0.157 4.157 15 C -0.027 4.027 16 N -0.386 5.386 17 C 0.340 3.660 18 O -0.430 6.430 19 C -0.272 4.272 20 S 0.080 5.920 21 C -0.697 4.697 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.548 5.548 25 Si 0.818 3.182 26 H -0.185 1.185 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.239 0.761 33 H 0.126 0.874 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.148 0.852 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.369 -7.561 -22.086 23.749 hybrid contribution 1.544 -2.295 1.631 3.211 sum -2.824 -9.855 -20.455 22.881 Atomic orbital electron populations 1.20358 0.83419 1.05020 1.04138 1.22787 0.99772 0.86898 1.00114 1.74906 0.95603 1.26796 1.18722 1.78116 1.15940 0.93137 1.16839 1.45414 1.09218 1.06469 1.47018 0.68682 1.22132 0.85368 0.96642 1.16427 1.16618 0.85807 0.82437 0.76678 1.90790 1.17471 1.82316 1.51664 1.45586 1.09239 1.06554 1.73162 1.21727 0.97116 0.78311 1.03117 1.23482 0.94968 0.97108 0.82780 0.85372 1.23497 1.00005 0.91687 1.00486 1.23523 1.01069 0.79111 0.98953 1.50362 1.64550 1.12225 1.11457 1.19624 0.77882 0.84505 0.84013 1.90668 1.50087 1.19786 1.82416 1.23286 1.03867 1.03482 0.96605 1.85497 1.79032 1.16610 1.10842 1.23165 1.45058 1.00274 1.01186 0.90135 1.26106 0.95990 0.95528 1.01338 1.70170 1.45848 1.10271 1.28492 0.85037 0.78863 0.77993 0.76342 1.18488 1.20431 1.18681 0.89931 0.88560 0.88867 0.76098 0.87361 0.93135 0.88596 0.85226 0.89673 0.87061 0.88676 0.88051 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 9.93 71.24 0.71 -0.93 16 2 C 0.04 1.29 7.29 42.04 0.31 1.60 16 3 N -0.29 -9.24 12.35 -47.88 -0.59 -9.83 16 4 N -0.06 -1.74 13.35 37.02 0.49 -1.25 16 5 N -0.35 -8.65 6.97 -48.52 -0.34 -8.98 16 6 H 0.46 8.21 8.32 -219.90 -1.83 6.38 16 7 C -0.07 -1.94 7.17 40.40 0.29 -1.65 16 8 C 0.60 16.27 7.81 86.61 0.68 16.95 16 9 O -0.55 -17.17 14.99 -4.09 -0.06 -17.23 16 10 N -0.70 -14.82 4.19 -466.58 -1.95 -16.77 16 11 C 0.12 2.09 5.23 86.38 0.45 2.55 16 12 C 0.12 1.41 4.29 45.09 0.19 1.61 16 13 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 14 C -0.12 -0.69 7.86 31.25 0.25 -0.44 16 15 C 0.09 0.99 8.61 86.48 0.74 1.74 16 16 N -0.65 -13.09 3.49 -814.01 -2.84 -15.93 16 17 C 0.55 18.22 8.00 87.66 0.70 18.92 16 18 O -0.55 -22.07 14.43 -3.05 -0.04 -22.12 16 19 C -0.12 -4.62 5.91 71.24 0.42 -4.20 16 20 S -0.15 -7.98 20.57 -56.49 -1.16 -9.15 16 21 C -0.55 -31.08 9.50 67.95 0.65 -30.44 16 22 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 23 C 0.02 0.87 5.49 84.86 0.47 1.33 16 24 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 25 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 2.14 6.62 -2.39 -0.02 2.12 16 32 H 0.40 7.50 7.41 -92.70 -0.69 6.81 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.23 8.13 -2.39 -0.02 1.22 16 35 H 0.10 0.68 8.10 -2.39 -0.02 0.66 16 36 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 39 H 0.09 3.42 8.14 -2.40 -0.02 3.40 16 40 H 0.10 3.53 8.14 -2.40 -0.02 3.51 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -85.75 369.49 0.25 -85.50 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -1.42 Total: 19.16 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.85 Total: 7.03 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.94 Total: -108.49 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.11 Total: -39.35 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.15 kcal Total: -85.75 0.25 -85.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738698184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.815 kcal (2) G-P(sol) polarization free energy of solvation -85.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds