Wall clock time and date at job start Tue Mar 31 2020 22:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.33317 * 126.81393 * 2 1 4 4 N 1.28519 * 109.43982 * 180.02562 * 3 2 1 5 5 N 1.28716 * 110.63938 * 359.75336 * 4 3 2 6 6 H 0.96988 * 126.04081 * 180.26362 * 5 4 3 7 7 C 1.37004 * 126.81294 * 180.02562 * 2 1 3 8 8 C 1.47236 * 127.19299 * 359.92295 * 7 2 1 9 9 O 1.21626 * 119.99438 * 0.02562 * 8 7 2 10 10 N 1.34771 * 120.00179 * 180.02562 * 8 7 2 11 11 C 1.46505 * 119.99611 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.46831 * 174.96827 * 11 10 8 13 13 N 1.46495 * 115.54715 * 85.77478 * 12 11 10 14 14 C 1.34779 * 120.00375 * 65.40694 * 13 12 11 15 15 O 1.21283 * 119.99626 * 354.97760 * 14 13 12 16 16 C 1.50700 * 120.00262 * 174.97499 * 14 13 12 17 17 S 1.81006 * 109.46951 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99857 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99846 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00231 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99666 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00450 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47294 * 89.99398 * 22 20 18 24 24 H 1.48497 * 109.47047 * 210.00145 * 22 20 18 25 25 H 1.48502 * 109.46965 * 329.99758 * 22 20 18 26 26 C 1.52993 * 117.49722 * 231.44326 * 12 11 10 27 27 C 1.52997 * 117.49928 * 300.10289 * 12 11 10 28 28 H 1.09003 * 109.47110 * 269.95550 * 1 2 3 29 29 H 1.09004 * 109.47615 * 29.95388 * 1 2 3 30 30 H 1.08997 * 109.47559 * 149.95720 * 1 2 3 31 31 H 0.96999 * 120.00486 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47545 * 54.97056 * 11 10 8 33 33 H 1.08996 * 109.46839 * 294.96726 * 11 10 8 34 34 H 0.97002 * 119.99938 * 245.40447 * 13 12 11 35 35 H 1.08999 * 109.47302 * 300.00003 * 16 14 13 36 36 H 1.08998 * 109.46945 * 60.00407 * 16 14 13 37 37 H 0.97004 * 119.99765 * 180.02562 * 21 20 18 38 38 H 1.09005 * 117.49813 * 215.00448 * 26 12 11 39 39 H 1.08997 * 117.50305 * 0.02987 * 26 12 11 40 40 H 1.08999 * 117.49998 * 359.97438 * 27 12 11 41 41 H 1.09000 * 117.49970 * 144.97302 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6056 -0.6015 0.0043 6 1 4.4211 -1.1265 0.0086 7 6 2.3278 -1.0968 -0.0005 8 6 1.9221 -2.5122 0.0005 9 8 0.7420 -2.8065 0.0014 10 7 2.8584 -3.4816 0.0003 11 6 2.4546 -4.8899 0.0007 12 6 3.6954 -5.7762 -0.1261 13 7 4.3756 -6.0945 1.1317 14 6 3.7536 -6.8437 2.0635 15 8 2.5991 -7.1780 1.9011 16 6 4.4926 -7.2661 3.3071 17 16 3.3960 -8.2552 4.3538 18 6 4.4845 -8.6024 5.6952 19 1 5.4955 -8.2226 5.6823 20 6 4.0431 -9.3647 6.7677 21 7 2.8111 -9.8279 6.7831 22 14 5.1973 -9.7334 8.1895 23 1 5.0741 -8.6678 9.2163 24 1 4.8399 -11.0436 8.7902 25 1 6.5957 -9.7820 7.6920 26 6 3.6886 -6.8491 -1.2167 27 6 4.5630 -5.6027 -1.3743 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5145 31 1 3.7996 -3.2470 -0.0008 32 1 1.7872 -5.0768 -0.8405 33 1 1.9378 -5.1194 0.9325 34 1 5.2738 -5.7660 1.2939 35 1 5.3624 -7.8611 3.0285 36 1 4.8177 -6.3815 3.8547 37 1 2.5024 -10.3604 7.5329 38 1 4.1904 -7.7919 -0.9984 39 1 2.8005 -6.9233 -1.8443 40 1 4.2497 -4.8574 -2.1053 41 1 5.6400 -5.7249 -1.2595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738982921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:15 Heat of formation + Delta-G solvation = 47.942196 kcal Electronic energy + Delta-G solvation = -26020.880314 eV Core-core repulsion = 22065.261985 eV Total energy + Delta-G solvation = -3955.618328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.79321 -40.39698 -39.42935 -37.52042 -35.06368 -34.04529 -32.93753 -32.74400 -32.48731 -29.23568 -28.68353 -27.18698 -25.55031 -24.50730 -23.10573 -22.51742 -21.55637 -21.05673 -20.00345 -19.26446 -17.95153 -17.33989 -16.94343 -16.59640 -16.50379 -16.05942 -15.39991 -15.22265 -14.86030 -14.69337 -14.43420 -14.18749 -14.07337 -13.44136 -13.38319 -13.05663 -13.01648 -12.94495 -12.55938 -12.27249 -12.12023 -11.92901 -11.57045 -11.22895 -11.11721 -11.08486 -10.97979 -10.89585 -10.78978 -10.43881 -9.88749 -9.81906 -9.61603 -9.35985 -9.15771 -9.10151 -8.31963 -6.57487 -6.27680 -3.99102 0.44532 1.85882 1.95957 2.42278 2.65285 2.75959 2.89036 3.17948 3.20346 3.25620 3.37044 3.52994 3.83260 4.09610 4.14151 4.16083 4.40029 4.43570 4.55780 4.61674 4.93233 5.07705 5.14884 5.19758 5.29904 5.30899 5.39733 5.55390 5.56588 5.57939 5.70630 5.73201 5.76781 5.82423 5.96555 6.01684 6.11288 6.45155 6.85252 7.47833 7.53514 7.57729 7.83747 8.28747 8.43849 9.17693 10.79671 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.002335 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.930735 B =11987.450290 C =12852.939718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.064 3.936 3 N -0.269 5.269 4 N -0.043 5.043 5 N -0.376 5.376 6 H 0.450 0.550 7 C -0.072 4.072 8 C 0.594 3.406 9 O -0.504 6.504 10 N -0.720 5.720 11 C 0.150 3.850 12 C 0.086 3.914 13 N -0.711 5.711 14 C 0.535 3.465 15 O -0.503 6.503 16 C -0.154 4.154 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.866 5.866 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.281 1.281 25 H -0.272 1.272 26 C -0.154 4.154 27 C -0.172 4.172 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.394 0.606 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.400 0.600 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 15.346 -18.895 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 N -0.136 5.136 4 N -0.025 5.025 5 N -0.103 5.103 6 H 0.296 0.704 7 C -0.206 4.206 8 C 0.378 3.622 9 O -0.377 6.377 10 N -0.371 5.371 11 C 0.026 3.974 12 C -0.003 4.003 13 N -0.366 5.366 14 C 0.321 3.679 15 O -0.376 6.376 16 C -0.304 4.304 17 S 0.170 5.830 18 C -0.686 4.686 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.193 4.193 27 C -0.210 4.210 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.227 0.773 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.627 15.771 -19.045 24.866 hybrid contribution 3.284 -0.951 1.310 3.662 sum 5.911 14.820 -17.735 23.855 Atomic orbital electron populations 1.20359 0.84632 1.04516 1.04142 1.22384 0.98752 0.86863 0.99552 1.74982 0.95129 1.25937 1.17525 1.78209 1.16103 0.92144 1.16017 1.45453 1.08738 1.07054 1.49053 0.70370 1.22098 0.85022 0.96469 1.16972 1.16684 0.86052 0.82062 0.77433 1.90885 1.16335 1.81733 1.48766 1.45878 1.08922 1.06856 1.75490 1.21216 0.94382 0.76676 1.05077 1.20636 0.95984 1.02059 0.81573 1.45454 1.19236 1.55653 1.16279 1.20393 0.87117 0.76752 0.83614 1.90720 1.16485 1.53198 1.77155 1.23537 1.04573 1.04912 0.97398 1.85441 1.16330 1.63540 1.17696 1.22849 1.00309 1.39161 1.06247 0.90951 1.24996 0.95663 0.94869 0.98034 1.70014 1.15636 1.33239 1.31268 0.86164 0.80250 0.77954 0.81115 1.20237 1.20690 1.19713 1.23372 1.02142 0.94055 0.99710 1.23354 0.98402 1.01630 0.97611 0.89654 0.90162 0.88641 0.77307 0.89540 0.88598 0.76494 0.89160 0.89310 0.92101 0.87653 0.87582 0.87695 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.93 36.00 0.36 -0.32 16 2 C 0.06 0.67 7.29 -82.40 -0.60 0.07 16 3 N -0.27 -3.08 12.35 33.51 0.41 -2.67 16 4 N -0.04 -0.43 13.35 60.35 0.81 0.38 16 5 N -0.38 -2.58 6.98 33.31 0.23 -2.35 16 6 H 0.45 1.17 8.32 -190.34 -1.58 -0.42 16 7 C -0.07 -0.66 7.17 -82.33 -0.59 -1.25 16 8 C 0.59 6.01 7.81 -12.61 -0.10 5.91 16 9 O -0.50 -6.82 14.99 5.25 0.08 -6.74 16 10 N -0.72 -5.60 5.44 -61.44 -0.33 -5.93 16 11 C 0.15 1.55 5.63 -4.03 -0.02 1.53 16 12 C 0.09 0.77 1.79 -131.82 -0.24 0.54 16 13 N -0.71 -7.56 5.45 -47.61 -0.26 -7.82 16 14 C 0.53 8.83 7.66 -10.98 -0.08 8.74 16 15 O -0.50 -10.34 14.64 5.56 0.08 -10.26 16 16 C -0.15 -2.85 6.16 36.01 0.22 -2.63 16 17 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 18 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 19 H 0.07 1.89 7.80 -52.48 -0.41 1.49 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 22 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 C -0.15 -1.30 10.11 -26.70 -0.27 -1.57 16 27 C -0.17 -0.95 9.94 -26.70 -0.27 -1.21 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.87 6.62 -51.93 -0.34 0.53 16 31 H 0.39 1.76 7.63 -40.82 -0.31 1.45 16 32 H 0.09 0.88 7.89 -51.93 -0.41 0.47 16 33 H 0.10 1.39 6.83 -51.93 -0.35 1.04 16 34 H 0.40 3.01 8.83 -40.82 -0.36 2.65 16 35 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 36 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -37.17 373.63 -7.53 -44.70 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.28 Total: 0.58 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.39 Total: -2.83 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 1.59 Total: -43.38 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.16 Total: -17.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.17 -7.53 -44.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738982921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.642 kcal (2) G-P(sol) polarization free energy of solvation -37.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds