Wall clock time and date at job start Tue Mar 31 2020 22:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.33317 * 126.81393 * 2 1 4 4 N 1.28519 * 109.43982 * 180.02562 * 3 2 1 5 5 N 1.28716 * 110.63938 * 359.75336 * 4 3 2 6 6 H 0.96988 * 126.04081 * 180.26362 * 5 4 3 7 7 C 1.37004 * 126.81294 * 180.02562 * 2 1 3 8 8 C 1.47236 * 127.19299 * 359.92295 * 7 2 1 9 9 O 1.21626 * 119.99438 * 0.02562 * 8 7 2 10 10 N 1.34771 * 120.00179 * 180.02562 * 8 7 2 11 11 C 1.46505 * 119.99611 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.46831 * 174.96827 * 11 10 8 13 13 N 1.46495 * 115.54715 * 85.77478 * 12 11 10 14 14 C 1.34779 * 120.00375 * 65.40694 * 13 12 11 15 15 O 1.21283 * 119.99626 * 354.97760 * 14 13 12 16 16 C 1.50700 * 120.00262 * 174.97499 * 14 13 12 17 17 S 1.81006 * 109.46951 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99857 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99846 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00231 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99666 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00450 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47294 * 89.99398 * 22 20 18 24 24 H 1.48497 * 109.47047 * 210.00145 * 22 20 18 25 25 H 1.48502 * 109.46965 * 329.99758 * 22 20 18 26 26 C 1.52993 * 117.49722 * 231.44326 * 12 11 10 27 27 C 1.52997 * 117.49928 * 300.10289 * 12 11 10 28 28 H 1.09003 * 109.47110 * 269.95550 * 1 2 3 29 29 H 1.09004 * 109.47615 * 29.95388 * 1 2 3 30 30 H 1.08997 * 109.47559 * 149.95720 * 1 2 3 31 31 H 0.96999 * 120.00486 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47545 * 54.97056 * 11 10 8 33 33 H 1.08996 * 109.46839 * 294.96726 * 11 10 8 34 34 H 0.97002 * 119.99938 * 245.40447 * 13 12 11 35 35 H 1.08999 * 109.47302 * 300.00003 * 16 14 13 36 36 H 1.08998 * 109.46945 * 60.00407 * 16 14 13 37 37 H 0.97004 * 119.99765 * 180.02562 * 21 20 18 38 38 H 1.09005 * 117.49813 * 215.00448 * 26 12 11 39 39 H 1.08997 * 117.50305 * 0.02987 * 26 12 11 40 40 H 1.08999 * 117.49998 * 359.97438 * 27 12 11 41 41 H 1.09000 * 117.49970 * 144.97302 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6056 -0.6015 0.0043 6 1 4.4211 -1.1265 0.0086 7 6 2.3278 -1.0968 -0.0005 8 6 1.9221 -2.5122 0.0005 9 8 0.7420 -2.8065 0.0014 10 7 2.8584 -3.4816 0.0003 11 6 2.4546 -4.8899 0.0007 12 6 3.6954 -5.7762 -0.1261 13 7 4.3756 -6.0945 1.1317 14 6 3.7536 -6.8437 2.0635 15 8 2.5991 -7.1780 1.9011 16 6 4.4926 -7.2661 3.3071 17 16 3.3960 -8.2552 4.3538 18 6 4.4845 -8.6024 5.6952 19 1 5.4955 -8.2226 5.6823 20 6 4.0431 -9.3647 6.7677 21 7 2.8111 -9.8279 6.7831 22 14 5.1973 -9.7334 8.1895 23 1 5.0741 -8.6678 9.2163 24 1 4.8399 -11.0436 8.7902 25 1 6.5957 -9.7820 7.6920 26 6 3.6886 -6.8491 -1.2167 27 6 4.5630 -5.6027 -1.3743 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5145 31 1 3.7996 -3.2470 -0.0008 32 1 1.7872 -5.0768 -0.8405 33 1 1.9378 -5.1194 0.9325 34 1 5.2738 -5.7660 1.2939 35 1 5.3624 -7.8611 3.0285 36 1 4.8177 -6.3815 3.8547 37 1 2.5024 -10.3604 7.5329 38 1 4.1904 -7.7919 -0.9984 39 1 2.8005 -6.9233 -1.8443 40 1 4.2497 -4.8574 -2.1053 41 1 5.6400 -5.7249 -1.2595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738982921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:14 Heat of formation + Delta-G solvation = 16.992504 kcal Electronic energy + Delta-G solvation = -26022.222393 eV Core-core repulsion = 22065.261985 eV Total energy + Delta-G solvation = -3956.960408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.52690 -41.32049 -40.44114 -38.52117 -35.85445 -34.81816 -34.59844 -34.01693 -33.49713 -30.58043 -29.49142 -27.98501 -27.65808 -25.26352 -23.75743 -23.31414 -22.52089 -21.83638 -20.96157 -20.04912 -19.85231 -18.13832 -17.84193 -17.66028 -17.36782 -17.02139 -16.89127 -16.46417 -16.28515 -15.88385 -15.59068 -15.13220 -14.88151 -14.79388 -14.55370 -14.08592 -13.97890 -13.74327 -13.66911 -13.43760 -13.17604 -13.02468 -12.90965 -12.62251 -12.45427 -12.32768 -11.97824 -11.76062 -11.70249 -11.60883 -11.31155 -11.15659 -10.86892 -10.56942 -10.27908 -10.23326 -10.11749 -8.67356 -8.36030 -6.13728 -0.29648 1.07385 1.24807 1.32331 1.41084 1.45348 1.55041 1.59753 1.71539 1.85696 2.12314 2.26379 2.73861 2.98377 3.13964 3.28683 3.42878 3.43689 3.68730 3.79227 3.86433 3.89013 3.97662 4.29726 4.44363 4.50336 4.54244 4.57311 4.72334 4.72970 4.80794 4.89894 4.98607 5.03242 5.18150 5.27401 5.40464 5.50902 5.61428 6.18246 6.18418 6.48709 6.83780 7.05601 7.09031 7.25837 8.73004 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.002335 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.930735 B =11987.450290 C =12852.939718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.051 3.949 3 N -0.295 5.295 4 N -0.050 5.050 5 N -0.346 5.346 6 H 0.469 0.531 7 C -0.070 4.070 8 C 0.597 3.403 9 O -0.543 6.543 10 N -0.699 5.699 11 C 0.158 3.842 12 C 0.063 3.937 13 N -0.682 5.682 14 C 0.537 3.463 15 O -0.552 6.552 16 C -0.129 4.129 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.257 1.257 26 C -0.173 4.173 27 C -0.122 4.122 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.413 0.587 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.420 0.580 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.271 0.729 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.382 16.509 -20.002 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 N -0.161 5.161 4 N -0.032 5.032 5 N -0.077 5.077 6 H 0.320 0.680 7 C -0.204 4.204 8 C 0.381 3.619 9 O -0.418 6.418 10 N -0.352 5.352 11 C 0.034 3.966 12 C -0.025 4.025 13 N -0.337 5.337 14 C 0.323 3.677 15 O -0.428 6.428 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.212 4.212 27 C -0.159 4.159 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.250 0.750 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.259 0.741 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.147 0.853 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.205 16.973 -20.189 27.095 hybrid contribution 2.249 -1.267 1.526 2.999 sum 8.454 15.706 -18.663 25.816 Atomic orbital electron populations 1.20369 0.84047 1.04799 1.04286 1.22691 0.99528 0.87120 0.99635 1.74974 0.95668 1.26694 1.18814 1.78137 1.15704 0.93115 1.16224 1.45388 1.08910 1.06370 1.47074 0.67974 1.21847 0.85700 0.95631 1.17272 1.16772 0.85727 0.82562 0.76822 1.90876 1.18081 1.82300 1.50586 1.45633 1.09677 1.05550 1.74318 1.20919 0.94996 0.77966 1.02732 1.20706 0.97114 1.03226 0.81488 1.45052 1.19676 1.53323 1.15636 1.20066 0.86388 0.77340 0.83945 1.90717 1.18484 1.55493 1.78124 1.23371 1.03186 1.04374 0.97135 1.85631 1.20617 1.66074 1.20163 1.23197 1.00605 1.39024 1.06479 0.89872 1.26125 0.97373 0.94539 1.01198 1.70186 1.17944 1.34309 1.32363 0.84970 0.78297 0.77762 0.77068 1.19438 1.20402 1.18051 1.23444 1.03485 0.94613 0.99625 1.23536 0.99016 0.99347 0.93989 0.89568 0.88827 0.89357 0.74993 0.89512 0.93181 0.74107 0.87142 0.87385 0.92031 0.88795 0.87427 0.85305 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 9.93 71.23 0.71 -0.62 16 2 C 0.05 1.02 7.29 42.04 0.31 1.33 16 3 N -0.30 -6.48 12.35 -47.89 -0.59 -7.08 16 4 N -0.05 -0.90 13.35 37.02 0.49 -0.41 16 5 N -0.35 -3.91 6.98 -48.52 -0.34 -4.25 16 6 H 0.47 0.77 8.32 -219.91 -1.83 -1.06 16 7 C -0.07 -1.18 7.17 40.41 0.29 -0.89 16 8 C 0.60 11.50 7.81 86.61 0.68 12.18 16 9 O -0.54 -14.90 14.99 -4.11 -0.06 -14.96 16 10 N -0.70 -9.48 5.44 -466.55 -2.54 -12.02 16 11 C 0.16 3.15 5.63 86.38 0.49 3.64 16 12 C 0.06 0.98 1.79 3.60 0.01 0.99 16 13 N -0.68 -12.89 5.45 -422.93 -2.31 -15.20 16 14 C 0.54 17.44 7.66 87.66 0.67 18.11 16 15 O -0.55 -23.45 14.64 -3.04 -0.04 -23.49 16 16 C -0.13 -4.70 6.16 71.24 0.44 -4.26 16 17 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 18 C -0.55 -30.39 9.50 67.95 0.65 -29.74 16 19 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -55.55 13.22 21.65 0.29 -55.26 16 22 Si 1.00 42.88 29.55 68.60 2.03 44.91 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 C -0.17 -2.56 10.11 30.62 0.31 -2.25 16 27 C -0.12 -0.77 9.94 30.62 0.30 -0.46 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.66 6.62 -2.39 -0.02 1.64 16 31 H 0.41 2.18 7.63 -92.71 -0.71 1.48 16 32 H 0.09 1.73 7.89 -2.39 -0.02 1.72 16 33 H 0.05 1.51 6.83 -2.39 -0.02 1.50 16 34 H 0.42 4.62 8.83 -92.71 -0.82 3.80 16 35 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 36 H 0.11 3.50 8.14 -2.40 -0.02 3.48 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.11 1.54 8.05 -2.39 -0.02 1.52 16 40 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -86.44 373.63 -1.16 -87.60 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -2.23 Total: 10.31 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.31 Total: -0.81 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -4.99 Total: -94.21 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.11 Total: -38.45 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -86.44 -1.16 -87.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738982921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.591 kcal (2) G-P(sol) polarization free energy of solvation -86.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds