Wall clock time and date at job start Tue Mar 31 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 110.64296 * 2 1 4 4 C 1.34781 * 119.99634 * 298.31325 * 3 2 1 5 5 O 1.21274 * 120.00344 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99423 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.46896 * 180.02562 * 6 4 3 8 8 C 1.76201 * 99.99894 * 180.02562 * 7 6 4 9 9 H 1.07991 * 120.00323 * 359.97438 * 8 7 6 10 10 C 1.38805 * 119.99766 * 179.97438 * 8 7 6 11 11 N 1.31633 * 120.00034 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46906 * 300.00462 * 12 10 8 15 15 H 1.48498 * 109.47018 * 60.00200 * 12 10 8 16 16 C 1.55156 * 110.87466 * 123.24980 * 2 1 3 17 17 C 1.54908 * 101.58344 * 153.93644 * 16 2 1 18 18 N 1.47423 * 104.83027 * 322.98725 * 17 16 2 19 19 C 1.34775 * 125.64712 * 204.16407 * 18 17 16 20 20 O 1.21557 * 119.99888 * 179.97438 * 19 18 17 21 21 C 1.47864 * 120.00159 * 359.95942 * 19 18 17 22 22 N 1.34548 * 126.04980 * 359.69146 * 21 19 18 23 23 C 1.30868 * 107.27004 * 179.86385 * 22 21 19 24 24 N 1.34577 * 107.62579 * 0.39635 * 23 22 21 25 25 H 0.97005 * 125.75096 * 179.77343 * 24 23 22 26 26 N 1.28846 * 108.50688 * 359.74551 * 24 23 22 27 27 C 1.47025 * 108.70338 * 24.13378 * 18 17 16 28 28 H 1.08995 * 109.47239 * 59.29749 * 1 2 3 29 29 H 1.08994 * 109.47193 * 179.29899 * 1 2 3 30 30 H 1.08994 * 109.46830 * 299.30022 * 1 2 3 31 31 H 0.96994 * 119.99836 * 118.31446 * 3 2 1 32 32 H 1.09001 * 109.47454 * 60.00304 * 6 4 3 33 33 H 1.09003 * 109.47322 * 299.99933 * 6 4 3 34 34 H 0.97001 * 119.99662 * 179.97438 * 11 10 8 35 35 H 1.08999 * 111.00386 * 272.01239 * 16 2 1 36 36 H 1.09004 * 111.00470 * 35.85630 * 16 2 1 37 37 H 1.09002 * 110.36336 * 204.15167 * 17 16 2 38 38 H 1.08998 * 110.36707 * 81.83093 * 17 16 2 39 39 H 1.08007 * 126.18777 * 180.12210 * 23 22 21 40 40 H 1.09002 * 109.87773 * 239.52084 * 27 18 17 41 41 H 1.09000 * 109.88059 * 118.35662 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7660 2.1967 -1.0276 5 8 1.0864 1.8047 -1.9525 6 6 2.2968 3.6071 -1.0273 7 16 1.7516 4.4573 -2.5294 8 6 2.4931 6.0351 -2.2742 9 1 3.0755 6.2205 -1.3838 10 6 2.3288 7.0399 -3.2176 11 7 1.6185 6.8142 -4.3026 12 14 3.1143 8.7130 -2.9467 13 1 2.7916 9.6024 -4.0912 14 1 2.5890 9.3091 -1.6922 15 1 4.5873 8.5570 -2.8417 16 6 2.0829 -0.7949 1.2124 17 6 3.4674 -1.2455 0.6836 18 7 3.2471 -1.5461 -0.7427 19 6 3.9949 -2.3778 -1.4948 20 8 3.7193 -2.5515 -2.6659 21 6 5.1507 -3.0786 -0.8954 22 7 5.5672 -2.9720 0.3795 23 6 6.6124 -3.7482 0.5130 24 7 6.8459 -4.3260 -0.6798 25 1 7.5624 -4.9494 -0.8770 26 7 5.9570 -3.9121 -1.5157 27 6 2.0760 -0.7891 -1.2086 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0275 -0.0126 30 1 -0.3633 0.5029 0.8962 31 1 2.5903 1.6843 0.7395 32 1 3.3862 3.5854 -0.9968 33 1 1.9193 4.1373 -0.1529 34 1 1.5033 7.5165 -4.9617 35 1 2.1887 -0.1515 2.0859 36 1 1.4515 -1.6547 1.4366 37 1 3.8031 -2.1378 1.2120 38 1 4.1955 -0.4419 0.7939 39 1 7.1867 -3.8948 1.4159 40 1 1.3140 -1.4754 -1.5781 41 1 2.3712 -0.0992 -1.9992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739670035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:55 Heat of formation + Delta-G solvation = 34.069229 kcal Electronic energy + Delta-G solvation = -26688.392028 eV Core-core repulsion = 22732.172122 eV Total energy + Delta-G solvation = -3956.219905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.87603 -40.61528 -39.06344 -37.39733 -34.47572 -33.71701 -32.40305 -31.85952 -31.58298 -29.90642 -28.54259 -27.29678 -25.45875 -24.48496 -23.38091 -22.98187 -21.22254 -20.13754 -19.47235 -18.99751 -17.84473 -17.21213 -16.86663 -16.55853 -16.20750 -15.90313 -15.35883 -15.03277 -14.87468 -14.78082 -14.17718 -13.87131 -13.65037 -13.24641 -13.05896 -12.88893 -12.66963 -12.62144 -12.37769 -12.25900 -11.85117 -11.61377 -11.44003 -11.14006 -11.05585 -11.02034 -10.98806 -10.75633 -10.65738 -10.36172 -10.15544 -9.80080 -9.28289 -9.04220 -8.94440 -8.73435 -8.20899 -6.46746 -6.18961 -3.89274 1.03656 1.70497 2.08287 2.71396 3.01580 3.09115 3.13496 3.25155 3.28914 3.31998 3.64049 3.70982 4.08552 4.22650 4.24330 4.32972 4.49229 4.71040 5.07096 5.14039 5.16005 5.22638 5.41911 5.45685 5.56486 5.62551 5.70216 5.74217 5.78108 5.80137 5.82899 5.90915 6.03024 6.10561 6.16238 6.28282 6.33625 6.69766 7.22756 7.52174 7.61551 7.71410 7.96690 8.37375 8.62223 9.26108 10.88358 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.002498 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.179128 B =11208.446638 C =11973.601653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 N -0.728 5.728 4 C 0.535 3.465 5 O -0.510 6.510 6 C -0.154 4.154 7 S -0.057 6.057 8 C -0.536 4.536 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.283 1.283 14 H -0.274 1.274 15 H -0.274 1.274 16 C -0.136 4.136 17 C 0.101 3.899 18 N -0.598 5.598 19 C 0.624 3.376 20 O -0.513 6.513 21 C 0.157 3.843 22 N -0.483 5.483 23 C 0.196 3.804 24 N -0.401 5.401 25 H 0.453 0.547 26 N -0.248 5.248 27 C 0.105 3.895 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.399 0.601 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.027 -23.131 18.139 30.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.081 3.919 3 N -0.383 5.383 4 C 0.321 3.679 5 O -0.383 6.383 6 C -0.305 4.305 7 S 0.169 5.831 8 C -0.684 4.684 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.745 3.255 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.200 1.200 16 C -0.174 4.174 17 C -0.021 4.021 18 N -0.332 5.332 19 C 0.407 3.593 20 O -0.385 6.385 21 C -0.124 4.124 22 N -0.209 5.209 23 C -0.101 4.101 24 N -0.123 5.123 25 H 0.300 0.700 26 N -0.088 5.088 27 C -0.017 4.017 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.233 0.767 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.247 0.753 40 H 0.099 0.901 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.347 -23.702 15.289 29.146 hybrid contribution 2.453 1.255 1.817 3.301 sum 9.800 -22.446 17.106 29.874 Atomic orbital electron populations 1.22083 0.92490 1.02585 1.04229 1.21140 0.94660 0.81931 0.94200 1.46068 1.56000 1.11639 1.24613 1.20291 0.79557 0.86700 0.81338 1.90689 1.36921 1.76225 1.34506 1.23540 1.04124 0.95044 1.07742 1.85410 1.68660 1.09367 1.19650 1.22825 1.38097 0.97807 1.09721 0.91027 1.24991 0.95145 0.98988 0.94462 1.70009 1.37312 1.33909 1.09021 0.86232 0.79514 0.81894 0.77903 1.20823 1.19948 1.19978 1.23177 0.96502 1.00573 0.97164 1.22582 0.96644 1.02473 0.80451 1.48065 1.29721 1.43498 1.11934 1.15822 0.80018 0.78802 0.84624 1.90882 1.69305 1.63240 1.15041 1.23717 0.99723 1.00392 0.88537 1.71383 1.11249 1.21316 1.16998 1.26691 0.96765 0.94057 0.92615 1.45273 1.24137 1.35084 1.07851 0.70040 1.74408 1.01313 1.13726 1.19310 1.22497 0.86841 0.94765 0.97611 0.89688 0.91671 0.91861 0.76654 0.89358 0.89232 0.92133 0.88930 0.88976 0.87972 0.91060 0.75342 0.90101 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.45 37.16 0.31 -1.44 16 2 C 0.17 1.90 0.81 -129.98 -0.11 1.80 16 3 N -0.73 -9.19 5.14 -45.91 -0.24 -9.43 16 4 C 0.53 9.60 7.07 -10.98 -0.08 9.52 16 5 O -0.51 -10.99 12.78 5.56 0.07 -10.92 16 6 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 7 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 8 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 9 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 10 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 11 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 12 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 C -0.14 -1.03 6.09 -24.58 -0.15 -1.18 16 17 C 0.10 0.93 6.11 -2.53 -0.02 0.91 16 18 N -0.60 -7.80 3.33 -171.62 -0.57 -8.37 16 19 C 0.62 9.56 7.86 -12.32 -0.10 9.46 16 20 O -0.51 -9.83 17.41 5.32 0.09 -9.74 16 21 C 0.16 1.96 7.79 -156.35 -1.22 0.74 16 22 N -0.48 -4.36 8.47 -12.37 -0.10 -4.47 16 23 C 0.20 0.92 13.14 -90.49 -1.19 -0.27 16 24 N -0.40 -2.19 6.93 29.56 0.20 -1.99 16 25 H 0.45 0.45 8.96 -190.21 -1.71 -1.26 16 26 N -0.25 -2.82 12.30 32.07 0.39 -2.43 16 27 C 0.11 1.50 5.76 -3.06 -0.02 1.48 16 28 H 0.08 1.26 6.38 -51.93 -0.33 0.92 16 29 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.40 3.84 8.47 -40.82 -0.35 3.50 16 32 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 33 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 34 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.09 0.51 8.04 -51.93 -0.42 0.09 16 36 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 37 H 0.10 0.86 6.16 -51.93 -0.32 0.54 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.23 -0.21 8.06 -52.48 -0.42 -0.63 16 40 H 0.08 1.14 7.80 -51.93 -0.41 0.74 16 41 H 0.09 1.63 6.47 -51.93 -0.34 1.29 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -40.57 360.47 -9.71 -50.28 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.36 Total: -0.63 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -2.14 Total: 5.15 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.42 Total: -52.35 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.16 Total: -20.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -40.57 -9.71 -50.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739670035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.354 kcal (2) G-P(sol) polarization free energy of solvation -40.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds