Wall clock time and date at job start Tue Mar 31 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 110.64296 * 2 1 4 4 C 1.34781 * 119.99634 * 298.31325 * 3 2 1 5 5 O 1.21274 * 120.00344 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99423 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.46896 * 180.02562 * 6 4 3 8 8 C 1.76201 * 99.99894 * 180.02562 * 7 6 4 9 9 H 1.07991 * 120.00323 * 359.97438 * 8 7 6 10 10 C 1.38805 * 119.99766 * 179.97438 * 8 7 6 11 11 N 1.31633 * 120.00034 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46906 * 300.00462 * 12 10 8 15 15 H 1.48498 * 109.47018 * 60.00200 * 12 10 8 16 16 C 1.55156 * 110.87466 * 123.24980 * 2 1 3 17 17 C 1.54908 * 101.58344 * 153.93644 * 16 2 1 18 18 N 1.47423 * 104.83027 * 322.98725 * 17 16 2 19 19 C 1.34775 * 125.64712 * 204.16407 * 18 17 16 20 20 O 1.21557 * 119.99888 * 179.97438 * 19 18 17 21 21 C 1.47864 * 120.00159 * 359.95942 * 19 18 17 22 22 N 1.34548 * 126.04980 * 359.69146 * 21 19 18 23 23 C 1.30868 * 107.27004 * 179.86385 * 22 21 19 24 24 N 1.34577 * 107.62579 * 0.39635 * 23 22 21 25 25 H 0.97005 * 125.75096 * 179.77343 * 24 23 22 26 26 N 1.28846 * 108.50688 * 359.74551 * 24 23 22 27 27 C 1.47025 * 108.70338 * 24.13378 * 18 17 16 28 28 H 1.08995 * 109.47239 * 59.29749 * 1 2 3 29 29 H 1.08994 * 109.47193 * 179.29899 * 1 2 3 30 30 H 1.08994 * 109.46830 * 299.30022 * 1 2 3 31 31 H 0.96994 * 119.99836 * 118.31446 * 3 2 1 32 32 H 1.09001 * 109.47454 * 60.00304 * 6 4 3 33 33 H 1.09003 * 109.47322 * 299.99933 * 6 4 3 34 34 H 0.97001 * 119.99662 * 179.97438 * 11 10 8 35 35 H 1.08999 * 111.00386 * 272.01239 * 16 2 1 36 36 H 1.09004 * 111.00470 * 35.85630 * 16 2 1 37 37 H 1.09002 * 110.36336 * 204.15167 * 17 16 2 38 38 H 1.08998 * 110.36707 * 81.83093 * 17 16 2 39 39 H 1.08007 * 126.18777 * 180.12210 * 23 22 21 40 40 H 1.09002 * 109.87773 * 239.52084 * 27 18 17 41 41 H 1.09000 * 109.88059 * 118.35662 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7660 2.1967 -1.0276 5 8 1.0864 1.8047 -1.9525 6 6 2.2968 3.6071 -1.0273 7 16 1.7516 4.4573 -2.5294 8 6 2.4931 6.0351 -2.2742 9 1 3.0755 6.2205 -1.3838 10 6 2.3288 7.0399 -3.2176 11 7 1.6185 6.8142 -4.3026 12 14 3.1143 8.7130 -2.9467 13 1 2.7916 9.6024 -4.0912 14 1 2.5890 9.3091 -1.6922 15 1 4.5873 8.5570 -2.8417 16 6 2.0829 -0.7949 1.2124 17 6 3.4674 -1.2455 0.6836 18 7 3.2471 -1.5461 -0.7427 19 6 3.9949 -2.3778 -1.4948 20 8 3.7193 -2.5515 -2.6659 21 6 5.1507 -3.0786 -0.8954 22 7 5.5672 -2.9720 0.3795 23 6 6.6124 -3.7482 0.5130 24 7 6.8459 -4.3260 -0.6798 25 1 7.5624 -4.9494 -0.8770 26 7 5.9570 -3.9121 -1.5157 27 6 2.0760 -0.7891 -1.2086 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0275 -0.0126 30 1 -0.3633 0.5029 0.8962 31 1 2.5903 1.6843 0.7395 32 1 3.3862 3.5854 -0.9968 33 1 1.9193 4.1373 -0.1529 34 1 1.5033 7.5165 -4.9617 35 1 2.1887 -0.1515 2.0859 36 1 1.4515 -1.6547 1.4366 37 1 3.8031 -2.1378 1.2120 38 1 4.1955 -0.4419 0.7939 39 1 7.1867 -3.8948 1.4159 40 1 1.3140 -1.4754 -1.5781 41 1 2.3712 -0.0992 -1.9992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739670035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:55 Heat of formation + Delta-G solvation = 2.045687 kcal Electronic energy + Delta-G solvation = -26689.780673 eV Core-core repulsion = 22732.172122 eV Total energy + Delta-G solvation = -3957.608550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.49575 -41.71921 -40.33301 -38.60793 -35.54935 -34.58238 -34.47811 -32.90966 -32.40334 -30.81256 -29.98350 -28.29744 -27.65255 -25.37406 -23.99352 -23.72579 -22.42963 -20.97745 -20.61396 -19.88946 -19.61342 -18.18692 -17.86715 -17.57685 -17.39145 -16.87800 -16.83856 -16.56378 -16.28696 -15.80887 -15.63345 -14.94384 -14.79263 -14.71656 -14.43811 -14.16954 -13.90995 -13.47906 -13.38221 -13.19038 -13.15843 -13.09556 -12.85739 -12.63717 -12.39506 -12.33672 -11.91955 -11.75709 -11.73449 -11.60096 -11.33407 -11.12485 -10.85636 -10.71734 -10.25922 -10.17191 -9.80474 -8.65586 -8.34015 -6.11897 0.23200 1.13985 1.26915 1.35660 1.43763 1.47077 1.56665 1.65513 2.10785 2.14747 2.25251 2.29896 2.94012 2.99874 3.28724 3.34988 3.50832 3.58342 3.88618 3.98939 4.02262 4.21554 4.32760 4.38259 4.51661 4.63288 4.64754 4.75681 4.79900 4.83493 4.90576 5.02779 5.13125 5.15077 5.32546 5.36886 5.41603 5.58268 5.94468 6.19830 6.24431 6.56584 6.74665 7.03543 7.06917 7.30152 8.74938 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.002498 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.179128 B =11208.446638 C =11973.601653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.169 3.831 3 N -0.701 5.701 4 C 0.535 3.465 5 O -0.553 6.553 6 C -0.129 4.129 7 S -0.154 6.154 8 C -0.546 4.546 9 H 0.083 0.917 10 C 0.011 3.989 11 N -0.913 5.913 12 Si 0.999 3.001 13 H -0.280 1.280 14 H -0.259 1.259 15 H -0.263 1.263 16 C -0.116 4.116 17 C 0.098 3.902 18 N -0.594 5.594 19 C 0.612 3.388 20 O -0.573 6.573 21 C 0.132 3.868 22 N -0.499 5.499 23 C 0.225 3.775 24 N -0.383 5.383 25 H 0.472 0.528 26 N -0.285 5.285 27 C 0.105 3.895 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.419 0.581 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.271 0.729 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.291 0.709 40 H 0.071 0.929 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.320 -23.649 23.066 34.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.082 3.918 3 N -0.357 5.357 4 C 0.321 3.679 5 O -0.430 6.430 6 C -0.280 4.280 7 S 0.074 5.926 8 C -0.693 4.693 9 H 0.101 0.899 10 C -0.193 4.193 11 N -0.549 5.549 12 Si 0.820 3.180 13 H -0.205 1.205 14 H -0.184 1.184 15 H -0.188 1.188 16 C -0.153 4.153 17 C -0.022 4.022 18 N -0.327 5.327 19 C 0.397 3.603 20 O -0.450 6.450 21 C -0.148 4.148 22 N -0.226 5.226 23 C -0.072 4.072 24 N -0.109 5.109 25 H 0.323 0.677 26 N -0.126 5.126 27 C -0.019 4.019 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.257 0.743 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.306 0.694 40 H 0.090 0.910 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.687 -24.250 20.319 33.087 hybrid contribution 1.837 1.234 0.378 2.245 sum 11.524 -23.016 20.697 33.029 Atomic orbital electron populations 1.22046 0.92158 1.03613 1.03178 1.21288 0.94825 0.80739 0.94948 1.45774 1.54973 1.11512 1.23413 1.20024 0.79311 0.86535 0.82038 1.90695 1.39032 1.76794 1.36504 1.23375 1.04865 0.95684 1.04082 1.85626 1.70048 1.11259 1.25707 1.23174 1.38039 0.97917 1.10218 0.89858 1.26160 0.95545 1.03704 0.93929 1.70190 1.39053 1.35421 1.10237 0.84997 0.78737 0.75942 0.78275 1.20502 1.18372 1.18766 1.23247 0.95045 1.01022 0.96034 1.22859 0.97939 1.03400 0.78034 1.48190 1.28726 1.42271 1.13478 1.16403 0.80811 0.78839 0.84223 1.90825 1.71167 1.65424 1.17620 1.23133 0.99787 1.01732 0.90141 1.71303 1.13049 1.23029 1.15207 1.27798 0.94968 0.91008 0.93391 1.45259 1.23357 1.34717 1.07524 0.67704 1.74294 1.02570 1.14318 1.21464 1.22374 0.87273 0.94203 0.98006 0.93845 0.89627 0.89739 0.74282 0.87838 0.86838 0.92053 0.85176 0.86866 0.86436 0.90580 0.69420 0.91022 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.45 71.98 0.61 -2.65 16 2 C 0.17 3.60 0.81 4.79 0.00 3.60 16 3 N -0.70 -16.64 5.14 -417.56 -2.15 -18.79 16 4 C 0.54 19.46 7.07 87.66 0.62 20.08 16 5 O -0.55 -25.33 12.78 -3.01 -0.04 -25.37 16 6 C -0.13 -5.10 6.16 71.24 0.44 -4.67 16 7 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 8 C -0.55 -31.56 9.50 67.96 0.65 -30.92 16 9 H 0.08 4.44 7.80 -2.92 -0.02 4.42 16 10 C 0.01 0.65 5.49 84.86 0.47 1.11 16 11 N -0.91 -57.23 13.22 21.65 0.29 -56.94 16 12 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 15 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 16 C -0.12 -1.27 6.09 31.99 0.19 -1.08 16 17 C 0.10 1.55 6.11 86.86 0.53 2.08 16 18 N -0.59 -15.73 3.33 -815.17 -2.71 -18.44 16 19 C 0.61 19.78 7.86 86.79 0.68 20.47 16 20 O -0.57 -24.11 17.41 -3.89 -0.07 -24.18 16 21 C 0.13 3.26 7.79 137.12 1.07 4.33 16 22 N -0.50 -7.70 8.47 -193.03 -1.64 -9.34 16 23 C 0.22 1.17 13.14 180.30 2.37 3.54 16 24 N -0.38 -3.24 6.93 -60.38 -0.42 -3.66 16 25 H 0.47 -0.40 8.96 -219.79 -1.97 -2.37 16 26 N -0.28 -6.39 12.30 -52.44 -0.65 -7.04 16 27 C 0.11 3.13 5.76 86.73 0.50 3.63 16 28 H 0.04 1.33 6.38 -2.39 -0.02 1.31 16 29 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.42 6.61 8.47 -92.71 -0.79 5.83 16 32 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.13 0.59 8.04 -2.39 -0.02 0.57 16 36 H 0.11 0.92 8.05 -2.38 -0.02 0.90 16 37 H 0.12 1.58 6.16 -2.39 -0.01 1.56 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.29 -2.44 8.06 -2.91 -0.02 -2.46 16 40 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 41 H 0.04 1.65 6.47 -2.39 -0.02 1.64 16 Total: -1.00 -99.29 360.47 -0.04 -99.33 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -1.65 Total: 8.53 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 8.13 Total: 19.53 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -7.27 Total: -114.21 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.11 Total: -49.55 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -99.29 -0.04 -99.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739670035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.377 kcal (2) G-P(sol) polarization free energy of solvation -99.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds