Wall clock time and date at job start Tue Mar 31 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 110.88711 * 2 1 4 4 C 1.34780 * 119.99566 * 59.30485 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 3 2 7 7 S 1.81002 * 109.47156 * 179.97438 * 6 4 3 8 8 C 1.76193 * 100.00049 * 180.02562 * 7 6 4 9 9 H 1.08005 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00056 * 180.02562 * 8 7 6 11 11 N 1.31631 * 120.00121 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99856 * 0.02562 * 10 8 7 13 13 H 1.48489 * 109.47437 * 89.99924 * 12 10 8 14 14 H 1.48500 * 109.46931 * 210.00082 * 12 10 8 15 15 H 1.48503 * 109.46655 * 329.99597 * 12 10 8 16 16 C 1.55156 * 111.00398 * 236.12182 * 2 1 3 17 17 C 1.54426 * 102.89614 * 206.40572 * 16 2 1 18 18 N 1.47019 * 107.27728 * 22.18862 * 17 16 2 19 19 C 1.34787 * 125.64755 * 181.09568 * 18 17 16 20 20 O 1.21545 * 120.00133 * 179.97438 * 19 18 17 21 21 C 1.47876 * 119.99495 * 359.95731 * 19 18 17 22 22 N 1.34548 * 126.04337 * 179.97438 * 21 19 18 23 23 C 1.30871 * 107.26557 * 179.97438 * 22 21 19 24 24 N 1.34575 * 107.62705 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.74929 * 179.97438 * 24 23 22 26 26 N 1.28854 * 108.50500 * 359.72784 * 24 23 22 27 27 C 1.47418 * 108.70769 * 1.05873 * 18 17 16 28 28 H 1.09000 * 109.46915 * 60.70003 * 1 2 3 29 29 H 1.08999 * 109.46883 * 180.70005 * 1 2 3 30 30 H 1.09000 * 109.46815 * 300.69826 * 1 2 3 31 31 H 0.96995 * 120.00423 * 239.29791 * 3 2 1 32 32 H 1.09002 * 109.47060 * 299.99722 * 6 4 3 33 33 H 1.09001 * 109.47380 * 59.99809 * 6 4 3 34 34 H 0.96999 * 120.00138 * 179.97438 * 11 10 8 35 35 H 1.09001 * 110.72049 * 324.75450 * 16 2 1 36 36 H 1.09007 * 110.71926 * 88.02107 * 16 2 1 37 37 H 1.08994 * 109.87577 * 262.76623 * 17 16 2 38 38 H 1.09008 * 110.00651 * 141.67750 * 17 16 2 39 39 H 1.07997 * 126.18380 * 179.97438 * 23 22 21 40 40 H 1.09001 * 110.36978 * 217.03190 * 27 18 17 41 41 H 1.09001 * 110.36815 * 94.71411 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7359 2.2107 1.0037 5 8 1.0184 1.8354 1.9067 6 6 2.2727 3.6188 1.0035 7 16 1.6734 4.4932 2.4706 8 6 2.4301 6.0646 2.2207 9 1 3.0477 6.2344 1.3510 10 6 2.2335 7.0841 3.1419 11 7 2.7992 8.2579 2.9555 12 14 1.1671 6.7898 4.6471 13 1 2.0101 6.2838 5.7598 14 1 0.5229 8.0643 5.0542 15 1 0.1203 5.7873 4.3237 16 6 2.0862 -0.8074 -1.2026 17 6 3.4684 -1.2732 -0.6953 18 7 3.4275 -1.2420 0.7740 19 6 4.4484 -1.5587 1.5951 20 8 4.3011 -1.4962 2.8000 21 6 5.7476 -1.9825 1.0300 22 7 6.8429 -2.3240 1.7327 23 6 7.7765 -2.6352 0.8699 24 7 7.2583 -2.4854 -0.3630 25 1 7.7257 -2.6462 -1.1976 26 7 6.0350 -2.0973 -0.2480 27 6 2.0854 -0.8063 1.2005 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 2.6260 1.6690 -0.7222 32 1 3.3623 3.5923 1.0157 33 1 1.9319 4.1375 0.1074 34 1 2.6615 8.9704 3.5991 35 1 1.4471 -1.6629 -1.4213 36 1 2.1916 -0.1692 -2.0799 37 1 4.2433 -0.5984 -1.0590 38 1 3.6693 -2.2879 -1.0391 39 1 8.7813 -2.9537 1.1049 40 1 2.1554 -0.1716 2.0839 41 1 1.4523 -1.6703 1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739670036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:58 Heat of formation + Delta-G solvation = 32.799083 kcal Electronic energy + Delta-G solvation = -26975.598651 eV Core-core repulsion = 23019.323668 eV Total energy + Delta-G solvation = -3956.274983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.84594 -40.69184 -39.10067 -37.49356 -34.35516 -33.78767 -32.41283 -32.25129 -31.46120 -30.02761 -28.67041 -27.23266 -25.58455 -24.67041 -23.33723 -22.98654 -21.37394 -20.15740 -19.55630 -18.87698 -17.95537 -17.52903 -16.87391 -16.49996 -16.33793 -15.69795 -15.52734 -15.08543 -14.97792 -14.91392 -14.19123 -13.83332 -13.73281 -13.44720 -13.14561 -12.87657 -12.76815 -12.72129 -12.53760 -12.37752 -11.97097 -11.69280 -11.53023 -11.23536 -11.09210 -11.01909 -10.97136 -10.83423 -10.57375 -10.35723 -10.12090 -9.82152 -9.37870 -9.13018 -8.96861 -8.76226 -8.46698 -6.87848 -6.26215 -3.97393 0.99187 1.79096 2.15328 2.55484 2.75951 2.96283 3.14302 3.28894 3.37881 3.53904 3.65634 3.73668 4.05952 4.10354 4.27295 4.36461 4.46869 4.61107 4.75965 4.88942 5.12751 5.14290 5.23504 5.37221 5.39558 5.52131 5.56570 5.58719 5.62919 5.71291 5.78174 5.81805 5.92873 6.02463 6.05413 6.24838 6.29475 6.59158 7.16683 7.54602 7.60255 7.95908 7.96849 8.43947 8.49443 9.20194 10.83080 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.002961 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.708169 B = 9453.864912 C =10519.988953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.166 3.834 3 N -0.724 5.724 4 C 0.535 3.465 5 O -0.511 6.511 6 C -0.124 4.124 7 S -0.138 6.138 8 C -0.521 4.521 9 H 0.087 0.913 10 C 0.096 3.904 11 N -0.881 5.881 12 Si 0.857 3.143 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.235 1.235 16 C -0.133 4.133 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.624 3.376 20 O -0.501 6.501 21 C 0.160 3.840 22 N -0.461 5.461 23 C 0.198 3.802 24 N -0.401 5.401 25 H 0.451 0.549 26 N -0.275 5.275 27 C 0.102 3.898 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.400 0.600 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.270 0.730 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.231 0.769 40 H 0.100 0.900 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.512 -25.532 -15.835 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.079 3.921 3 N -0.379 5.379 4 C 0.321 3.679 5 O -0.385 6.385 6 C -0.275 4.275 7 S 0.088 5.912 8 C -0.669 4.669 9 H 0.105 0.895 10 C -0.113 4.113 11 N -0.518 5.518 12 Si 0.681 3.319 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.159 1.159 16 C -0.172 4.172 17 C -0.015 4.015 18 N -0.338 5.338 19 C 0.407 3.593 20 O -0.371 6.371 21 C -0.120 4.120 22 N -0.185 5.185 23 C -0.100 4.100 24 N -0.124 5.124 25 H 0.298 0.702 26 N -0.116 5.116 27 C -0.021 4.021 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.234 0.766 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.247 0.753 40 H 0.119 0.881 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.801 -25.791 -13.496 29.502 hybrid contribution 1.698 0.567 -1.421 2.285 sum 6.499 -25.224 -14.917 30.017 Atomic orbital electron populations 1.22050 0.92245 1.02690 1.04429 1.21300 0.94654 0.81885 0.94298 1.45921 1.53586 1.11416 1.26947 1.20247 0.79975 0.86570 0.81094 1.90670 1.35813 1.76962 1.35103 1.23281 1.04379 0.94506 1.05345 1.84793 1.67005 1.11340 1.28040 1.22321 1.35720 0.95316 1.13543 0.89472 1.24713 0.94904 0.93987 0.97698 1.69939 1.42566 1.02753 1.36547 0.86732 0.82407 0.79307 0.83405 1.19158 1.19978 1.15874 1.23047 0.95893 1.00603 0.97619 1.22115 0.97660 1.02210 0.79565 1.48071 1.12108 1.66466 1.07118 1.15848 0.80088 0.78196 0.85121 1.90889 1.81206 1.51755 1.13291 1.23749 0.96664 1.05896 0.85723 1.71338 0.99047 1.16107 1.31996 1.26773 1.01596 1.01256 0.80403 1.45181 1.08618 1.47513 1.11109 0.70223 1.74360 0.98238 1.17896 1.21142 1.22774 0.81349 0.98641 0.99321 0.91815 0.91573 0.89467 0.76597 0.88730 0.88510 0.91962 0.88756 0.89036 0.90727 0.90634 0.75262 0.88141 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.57 37.16 0.32 -1.27 16 2 C 0.17 1.73 0.82 -129.67 -0.11 1.62 16 3 N -0.72 -8.83 5.18 -45.62 -0.24 -9.06 16 4 C 0.53 9.27 7.22 -10.98 -0.08 9.19 16 5 O -0.51 -10.51 12.67 5.56 0.07 -10.43 16 6 C -0.12 -2.43 6.16 36.01 0.22 -2.20 16 7 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 8 C -0.52 -15.25 10.04 30.94 0.31 -14.94 16 9 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 10 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 11 N -0.88 -26.98 13.97 55.49 0.78 -26.20 16 12 Si 0.86 22.23 27.74 -169.99 -4.72 17.51 16 13 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.23 -6.05 6.74 56.52 0.38 -5.67 16 16 C -0.13 -0.87 5.99 -24.84 -0.15 -1.02 16 17 C 0.11 0.88 5.53 -3.01 -0.02 0.87 16 18 N -0.60 -7.45 3.33 -171.56 -0.57 -8.02 16 19 C 0.62 9.63 7.86 -12.31 -0.10 9.53 16 20 O -0.50 -9.88 17.35 5.33 0.09 -9.79 16 21 C 0.16 2.07 7.82 -156.36 -1.22 0.84 16 22 N -0.46 -5.72 11.41 -12.37 -0.14 -5.86 16 23 C 0.20 1.22 13.14 -90.49 -1.19 0.03 16 24 N -0.40 -2.00 6.93 29.56 0.20 -1.79 16 25 H 0.45 0.12 8.96 -190.21 -1.71 -1.58 16 26 N -0.27 -2.48 9.78 32.07 0.31 -2.16 16 27 C 0.10 1.32 5.81 -2.53 -0.01 1.30 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.09 1.20 6.23 -51.93 -0.32 0.88 16 31 H 0.40 3.81 8.50 -40.82 -0.35 3.46 16 32 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 33 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 34 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.09 0.47 8.04 -51.93 -0.42 0.05 16 36 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 37 H 0.07 0.61 7.65 -51.93 -0.40 0.21 16 38 H 0.08 0.55 7.74 -51.92 -0.40 0.15 16 39 H 0.23 0.19 8.06 -52.49 -0.42 -0.23 16 40 H 0.10 1.74 6.48 -51.93 -0.34 1.40 16 41 H 0.08 0.92 8.03 -51.93 -0.42 0.51 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -41.10 358.95 -9.36 -50.47 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.45 Total: -1.21 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -2.12 Total: 6.70 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.35 Total: -53.11 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.16 Total: -20.22 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.72 Total: 17.51 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -41.10 -9.36 -50.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739670036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.268 kcal (2) G-P(sol) polarization free energy of solvation -41.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds