Wall clock time and date at job start Tue Mar 31 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 110.88711 * 2 1 4 4 C 1.34780 * 119.99566 * 59.30485 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 3 2 7 7 S 1.81002 * 109.47156 * 179.97438 * 6 4 3 8 8 C 1.76193 * 100.00049 * 180.02562 * 7 6 4 9 9 H 1.08005 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00056 * 180.02562 * 8 7 6 11 11 N 1.31631 * 120.00121 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99856 * 0.02562 * 10 8 7 13 13 H 1.48489 * 109.47437 * 89.99924 * 12 10 8 14 14 H 1.48500 * 109.46931 * 210.00082 * 12 10 8 15 15 H 1.48503 * 109.46655 * 329.99597 * 12 10 8 16 16 C 1.55156 * 111.00398 * 236.12182 * 2 1 3 17 17 C 1.54426 * 102.89614 * 206.40572 * 16 2 1 18 18 N 1.47019 * 107.27728 * 22.18862 * 17 16 2 19 19 C 1.34787 * 125.64755 * 181.09568 * 18 17 16 20 20 O 1.21545 * 120.00133 * 179.97438 * 19 18 17 21 21 C 1.47876 * 119.99495 * 359.95731 * 19 18 17 22 22 N 1.34548 * 126.04337 * 179.97438 * 21 19 18 23 23 C 1.30871 * 107.26557 * 179.97438 * 22 21 19 24 24 N 1.34575 * 107.62705 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.74929 * 179.97438 * 24 23 22 26 26 N 1.28854 * 108.50500 * 359.72784 * 24 23 22 27 27 C 1.47418 * 108.70769 * 1.05873 * 18 17 16 28 28 H 1.09000 * 109.46915 * 60.70003 * 1 2 3 29 29 H 1.08999 * 109.46883 * 180.70005 * 1 2 3 30 30 H 1.09000 * 109.46815 * 300.69826 * 1 2 3 31 31 H 0.96995 * 120.00423 * 239.29791 * 3 2 1 32 32 H 1.09002 * 109.47060 * 299.99722 * 6 4 3 33 33 H 1.09001 * 109.47380 * 59.99809 * 6 4 3 34 34 H 0.96999 * 120.00138 * 179.97438 * 11 10 8 35 35 H 1.09001 * 110.72049 * 324.75450 * 16 2 1 36 36 H 1.09007 * 110.71926 * 88.02107 * 16 2 1 37 37 H 1.08994 * 109.87577 * 262.76623 * 17 16 2 38 38 H 1.09008 * 110.00651 * 141.67750 * 17 16 2 39 39 H 1.07997 * 126.18380 * 179.97438 * 23 22 21 40 40 H 1.09001 * 110.36978 * 217.03190 * 27 18 17 41 41 H 1.09001 * 110.36815 * 94.71411 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7359 2.2107 1.0037 5 8 1.0184 1.8354 1.9067 6 6 2.2727 3.6188 1.0035 7 16 1.6734 4.4932 2.4706 8 6 2.4301 6.0646 2.2207 9 1 3.0477 6.2344 1.3510 10 6 2.2335 7.0841 3.1419 11 7 2.7992 8.2579 2.9555 12 14 1.1671 6.7898 4.6471 13 1 2.0101 6.2838 5.7598 14 1 0.5229 8.0643 5.0542 15 1 0.1203 5.7873 4.3237 16 6 2.0862 -0.8074 -1.2026 17 6 3.4684 -1.2732 -0.6953 18 7 3.4275 -1.2420 0.7740 19 6 4.4484 -1.5587 1.5951 20 8 4.3011 -1.4962 2.8000 21 6 5.7476 -1.9825 1.0300 22 7 6.8429 -2.3240 1.7327 23 6 7.7765 -2.6352 0.8699 24 7 7.2583 -2.4854 -0.3630 25 1 7.7257 -2.6462 -1.1976 26 7 6.0350 -2.0973 -0.2480 27 6 2.0854 -0.8063 1.2005 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 2.6260 1.6690 -0.7222 32 1 3.3623 3.5923 1.0157 33 1 1.9319 4.1375 0.1074 34 1 2.6615 8.9704 3.5991 35 1 1.4471 -1.6629 -1.4213 36 1 2.1916 -0.1692 -2.0799 37 1 4.2433 -0.5984 -1.0590 38 1 3.6693 -2.2879 -1.0391 39 1 8.7813 -2.9537 1.1049 40 1 2.1554 -0.1716 2.0839 41 1 1.4523 -1.6703 1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739670036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:58 Heat of formation + Delta-G solvation = -0.276277 kcal Electronic energy + Delta-G solvation = -26977.032906 eV Core-core repulsion = 23019.323668 eV Total energy + Delta-G solvation = -3957.709238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.49714 -41.72915 -40.33197 -38.63696 -35.46957 -34.69300 -34.48760 -33.27404 -32.29942 -30.87665 -30.02895 -28.14814 -27.86887 -25.49627 -23.99943 -23.71974 -22.50418 -20.99019 -20.66225 -19.93881 -19.47601 -18.56645 -17.81582 -17.64416 -17.41957 -17.11629 -16.68901 -16.59991 -16.28854 -15.83552 -15.64050 -15.04604 -14.86602 -14.80250 -14.68983 -14.05420 -14.00254 -13.66338 -13.42887 -13.37097 -13.20693 -13.10789 -12.99500 -12.69203 -12.38348 -12.34269 -11.88022 -11.84742 -11.82233 -11.64417 -11.43087 -11.19527 -10.78445 -10.74961 -10.55012 -10.26346 -9.76312 -9.00993 -8.53988 -6.24090 0.20685 0.96763 1.11784 1.29840 1.43379 1.44681 1.53377 1.57917 1.95430 2.15826 2.19752 2.24112 2.69966 2.84432 2.97659 3.29403 3.49165 3.51172 3.85396 3.89205 3.99780 4.19700 4.27503 4.31378 4.42337 4.54770 4.67183 4.74348 4.80346 4.84117 4.86656 4.97599 5.09167 5.18737 5.25435 5.39816 5.55819 5.68503 5.93395 6.08612 6.22583 6.48777 6.77205 6.91500 7.05218 7.21522 8.58577 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.002961 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.708169 B = 9453.864912 C =10519.988953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.165 3.835 3 N -0.701 5.701 4 C 0.536 3.464 5 O -0.548 6.548 6 C -0.111 4.111 7 S -0.175 6.175 8 C -0.529 4.529 9 H 0.062 0.938 10 C 0.047 3.953 11 N -0.917 5.917 12 Si 0.913 3.087 13 H -0.267 1.267 14 H -0.256 1.256 15 H -0.236 1.236 16 C -0.114 4.114 17 C 0.103 3.897 18 N -0.597 5.597 19 C 0.612 3.388 20 O -0.568 6.568 21 C 0.126 3.874 22 N -0.522 5.522 23 C 0.220 3.780 24 N -0.377 5.377 25 H 0.475 0.525 26 N -0.259 5.259 27 C 0.098 3.902 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.416 0.584 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.277 0.723 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.283 0.717 40 H 0.048 0.952 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 -27.777 -19.162 34.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.078 3.922 3 N -0.356 5.356 4 C 0.322 3.678 5 O -0.425 6.425 6 C -0.262 4.262 7 S 0.051 5.949 8 C -0.676 4.676 9 H 0.080 0.920 10 C -0.159 4.159 11 N -0.555 5.555 12 Si 0.735 3.265 13 H -0.192 1.192 14 H -0.180 1.180 15 H -0.160 1.160 16 C -0.151 4.151 17 C -0.018 4.018 18 N -0.330 5.330 19 C 0.397 3.603 20 O -0.444 6.444 21 C -0.153 4.153 22 N -0.248 5.248 23 C -0.077 4.077 24 N -0.103 5.103 25 H 0.327 0.673 26 N -0.102 5.102 27 C -0.026 4.026 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.254 0.746 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.298 0.702 40 H 0.067 0.933 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.465 -28.051 -16.954 33.229 hybrid contribution 1.655 1.132 -0.576 2.086 sum 7.120 -26.919 -17.531 32.903 Atomic orbital electron populations 1.22010 0.91644 1.04063 1.03230 1.21511 0.95021 0.80440 0.95259 1.45709 1.52644 1.11578 1.25631 1.19881 0.79835 0.86213 0.81887 1.90676 1.37666 1.77383 1.36807 1.23274 1.04691 0.95625 1.02653 1.84736 1.67368 1.10275 1.32506 1.22461 1.35351 0.97144 1.12668 0.91996 1.25543 0.96111 0.93846 1.00385 1.70009 1.43916 1.03642 1.37900 0.85889 0.80875 0.79833 0.79921 1.19153 1.17998 1.15966 1.23121 0.94563 1.01165 0.96283 1.22419 0.99114 1.03584 0.76717 1.48189 1.11155 1.64844 1.08853 1.16394 0.81520 0.77636 0.84746 1.90828 1.82614 1.54907 1.16022 1.23246 0.96152 1.08949 0.86978 1.71247 1.00343 1.18420 1.34749 1.27624 1.02104 0.98440 0.79536 1.45216 1.07374 1.45485 1.12218 0.67335 1.74232 0.99885 1.17011 1.19110 1.22756 0.82342 0.98716 0.98745 0.90128 0.88924 0.93495 0.74604 0.88024 0.86456 0.91329 0.85868 0.85904 0.90203 0.88887 0.70215 0.93308 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.57 71.98 0.62 -2.16 16 2 C 0.16 3.09 0.82 5.00 0.00 3.09 16 3 N -0.70 -15.95 5.18 -416.64 -2.16 -18.11 16 4 C 0.54 18.61 7.22 87.66 0.63 19.24 16 5 O -0.55 -23.29 12.67 -3.03 -0.04 -23.33 16 6 C -0.11 -4.34 6.16 71.24 0.44 -3.90 16 7 S -0.18 -9.18 18.55 -56.49 -1.05 -10.23 16 8 C -0.53 -31.64 10.04 67.96 0.68 -30.96 16 9 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 10 C 0.05 2.81 5.50 84.86 0.47 3.27 16 11 N -0.92 -56.98 13.97 21.65 0.30 -56.68 16 12 Si 0.91 46.55 27.74 68.60 1.90 48.45 16 13 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 14 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 16 C -0.11 -0.96 5.99 31.82 0.19 -0.77 16 17 C 0.10 1.37 5.53 86.77 0.48 1.85 16 18 N -0.60 -14.62 3.33 -814.96 -2.71 -17.33 16 19 C 0.61 19.75 7.86 86.79 0.68 20.43 16 20 O -0.57 -24.41 17.35 -3.86 -0.07 -24.47 16 21 C 0.13 3.22 7.82 137.13 1.07 4.29 16 22 N -0.52 -12.79 11.41 -193.04 -2.20 -14.99 16 23 C 0.22 2.10 13.14 180.30 2.37 4.47 16 24 N -0.38 -2.47 6.93 -60.38 -0.42 -2.88 16 25 H 0.47 -1.83 8.96 -219.79 -1.97 -3.80 16 26 N -0.26 -4.06 9.78 -52.44 -0.51 -4.57 16 27 C 0.10 2.56 5.81 86.86 0.50 3.06 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.05 1.28 6.23 -2.39 -0.01 1.27 16 31 H 0.42 6.68 8.50 -92.71 -0.79 5.89 16 32 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 33 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 34 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.12 0.49 8.04 -2.39 -0.02 0.47 16 36 H 0.12 0.41 8.07 -2.38 -0.02 0.39 16 37 H 0.08 1.02 7.65 -2.39 -0.02 1.00 16 38 H 0.09 0.99 7.74 -2.38 -0.02 0.97 16 39 H 0.28 -0.79 8.06 -2.91 -0.02 -0.82 16 40 H 0.05 1.82 6.48 -2.39 -0.02 1.80 16 41 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 Total: -1.00 -98.67 358.95 -0.50 -99.17 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -1.69 Total: 3.06 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 8.14 Total: 21.92 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -7.70 Total: -114.57 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.11 Total: -47.80 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.90 Total: 48.45 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -1.05 Total: -10.23 kcal Total: -98.67 -0.50 -99.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739670036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.895 kcal (2) G-P(sol) polarization free energy of solvation -98.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds