Wall clock time and date at job start Tue Mar 31 2020 22:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48493 * 109.47323 * 240.00249 * 3 2 1 5 5 H 1.48500 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46968 * 120.00110 * 3 2 1 7 7 C 1.38799 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00251 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99862 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46889 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.64993 * 359.97196 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.90064 * 14 13 11 16 16 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 17 17 H 1.09000 * 110.89538 * 277.26533 * 16 15 14 18 18 C 1.52998 * 111.06990 * 153.48436 * 16 15 14 19 19 N 1.46504 * 109.47182 * 181.21215 * 18 16 15 20 20 C 1.34780 * 120.00203 * 180.02562 * 19 18 16 21 21 O 1.21617 * 119.99854 * 359.97438 * 20 19 18 22 22 C 1.47234 * 119.99988 * 179.97438 * 20 19 18 23 23 C 1.37008 * 127.18932 * 179.97438 * 22 20 19 24 24 N 1.33318 * 106.37024 * 179.97438 * 23 22 20 25 25 N 1.28506 * 109.44025 * 0.02562 * 24 23 22 26 26 N 1.28709 * 110.64007 * 359.71084 * 25 24 23 27 27 H 0.97004 * 126.03592 * 180.29845 * 26 25 24 28 28 C 1.47426 * 125.64489 * 180.02562 * 13 11 10 29 29 H 0.96993 * 119.99756 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46773 * 60.00483 * 10 9 7 31 31 H 1.08995 * 109.47418 * 300.00222 * 10 9 7 32 32 H 1.09002 * 109.88241 * 298.39592 * 14 13 11 33 33 H 1.09000 * 109.88049 * 59.40721 * 14 13 11 34 34 H 1.09000 * 110.72188 * 96.24097 * 15 14 13 35 35 H 1.09002 * 110.72265 * 219.52294 * 15 14 13 36 36 H 1.08999 * 109.47428 * 301.20611 * 18 16 15 37 37 H 1.08994 * 109.47354 * 61.21414 * 18 16 15 38 38 H 0.97004 * 119.99898 * 359.97438 * 19 18 16 39 39 H 1.08004 * 126.80915 * 359.97438 * 23 22 20 40 40 H 1.08999 * 110.36956 * 322.93474 * 28 13 11 41 41 H 1.09003 * 110.36599 * 85.25378 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 4.3110 -6.2451 -0.0003 15 6 4.8698 -7.6834 0.0283 16 6 3.6843 -8.5025 0.6105 17 1 3.6692 -8.4446 1.6989 18 6 3.7391 -9.9581 0.1425 19 7 2.5925 -10.6896 0.6870 20 6 2.4327 -11.9980 0.4058 21 8 3.2400 -12.5713 -0.3004 22 6 1.2806 -12.7333 0.9534 23 6 0.9760 -14.0556 0.7637 24 7 -0.1478 -14.2836 1.4438 25 7 -0.5278 -13.1985 2.0180 26 7 0.2922 -12.2396 1.7640 27 1 0.2219 -11.3278 2.0876 28 6 2.4655 -7.7679 -0.0018 29 1 -0.4849 0.8400 0.0004 30 1 3.1244 -3.7314 0.8895 31 1 3.1245 -3.7314 -0.8904 32 1 4.6487 -5.7341 -0.9020 33 1 4.6458 -5.6998 0.8821 34 1 5.1143 -8.0223 -0.9784 35 1 5.7414 -7.7457 0.6798 36 1 3.7071 -9.9911 -0.9465 37 1 4.6631 -10.4179 0.4930 38 1 1.9488 -10.2325 1.2505 39 1 1.5353 -14.7711 0.1792 40 1 1.5794 -7.9255 0.6130 41 1 2.2874 -8.1124 -1.0206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744761513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:19 Heat of formation + Delta-G solvation = 25.833603 kcal Electronic energy + Delta-G solvation = -25558.172436 eV Core-core repulsion = 21601.595407 eV Total energy + Delta-G solvation = -3956.577029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.88180 -40.46409 -39.72998 -37.68066 -35.52370 -34.07900 -32.51786 -32.47873 -31.73151 -29.84588 -29.21686 -26.44878 -25.52221 -24.63018 -23.52647 -22.94470 -21.58293 -21.18276 -19.84396 -19.36522 -17.81423 -17.44434 -17.00756 -16.86654 -16.65723 -16.31634 -15.73393 -15.14603 -14.90504 -14.85768 -14.76575 -14.51031 -14.05690 -13.96168 -13.52224 -13.07526 -12.80959 -12.72847 -12.60306 -12.45602 -11.95724 -11.88309 -11.79077 -11.52424 -11.30537 -11.21598 -11.10541 -11.08683 -10.83178 -10.81565 -10.13552 -9.89297 -9.79821 -9.55970 -9.11727 -8.68285 -8.32067 -6.57865 -6.27463 -3.99075 0.31719 1.77042 1.86231 2.28060 2.47810 2.76106 2.91444 3.18922 3.20263 3.24651 3.50431 3.72943 3.94137 4.00984 4.13812 4.14796 4.22778 4.41927 4.61777 4.69103 4.79194 4.89766 4.92849 5.07705 5.11905 5.18431 5.32993 5.39996 5.43363 5.46418 5.52301 5.57486 5.62382 5.74476 5.82585 5.99718 6.04331 6.23996 6.61524 7.33390 7.49166 7.53538 7.72227 8.28948 8.40362 9.17663 10.79907 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.001892 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.838956 B =14793.857810 C =15873.253412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.515 6.515 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.120 4.120 16 C -0.120 4.120 17 H 0.095 0.905 18 C 0.133 3.867 19 N -0.725 5.725 20 C 0.598 3.402 21 O -0.511 6.511 22 C -0.070 4.070 23 C 0.036 3.964 24 N -0.269 5.269 25 N -0.041 5.041 26 N -0.373 5.373 27 H 0.452 0.548 28 C 0.111 3.889 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.398 0.602 39 H 0.206 0.794 40 H 0.075 0.925 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.579 -23.134 2.753 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.298 4.298 11 C 0.338 3.662 12 O -0.389 6.389 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.158 4.158 16 C -0.139 4.139 17 H 0.113 0.887 18 C 0.009 3.991 19 N -0.377 5.377 20 C 0.381 3.619 21 O -0.384 6.384 22 C -0.205 4.205 23 C -0.124 4.124 24 N -0.134 5.134 25 N -0.023 5.023 26 N -0.101 5.101 27 H 0.299 0.701 28 C -0.012 4.012 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.232 0.768 39 H 0.222 0.778 40 H 0.093 0.907 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.915 -24.172 2.894 25.599 hybrid contribution 2.603 2.536 -0.041 3.634 sum 10.518 -21.636 2.853 24.225 Atomic orbital electron populations 1.70004 1.05959 1.27649 1.46616 1.24999 0.95047 0.99057 0.94462 0.86213 0.79241 0.81175 0.78815 1.19906 1.20767 1.19924 1.22805 0.94846 0.91544 1.59275 0.90951 1.85403 1.04858 0.96412 1.96741 1.23510 1.06555 0.94847 1.04850 1.20073 0.85647 0.85509 0.74993 1.90714 1.14928 1.85133 1.48136 1.48483 1.06599 1.05423 1.75991 1.22003 0.80388 0.97267 1.02579 1.22663 0.97158 0.93544 1.02435 1.22726 0.96550 0.93039 1.01590 0.88702 1.21428 0.88402 0.89625 0.99598 1.45904 1.29021 1.09642 1.53096 1.16705 0.83240 0.81448 0.80464 1.90896 1.42782 1.67893 1.36840 1.22356 0.96406 0.96880 1.04837 1.23966 0.94747 0.93624 1.00017 1.75047 1.11661 1.16932 1.09801 1.78283 1.14324 0.91581 1.18107 1.45652 1.16934 1.13943 1.33528 0.70095 1.22197 0.96943 0.81156 1.00914 0.92068 0.89256 0.89240 0.90937 0.91025 0.89858 0.89339 0.90131 0.90008 0.76764 0.77763 0.90660 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.71 13.22 55.49 0.73 -24.98 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.86 5.35 36.01 0.19 -2.67 16 11 C 0.55 9.81 7.87 -10.98 -0.09 9.73 16 12 O -0.52 -11.22 16.12 5.55 0.09 -11.13 16 13 N -0.63 -7.74 3.33 -170.51 -0.57 -8.31 16 14 C 0.10 0.86 6.48 -3.07 -0.02 0.84 16 15 C -0.12 -0.61 6.45 -24.76 -0.16 -0.77 16 16 C -0.12 -0.62 3.10 -88.33 -0.27 -0.89 16 17 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 18 C 0.13 0.64 5.13 -4.04 -0.02 0.62 16 19 N -0.72 -3.45 5.40 -61.45 -0.33 -3.78 16 20 C 0.60 4.29 7.81 -12.60 -0.10 4.19 16 21 O -0.51 -5.32 16.92 5.26 0.09 -5.23 16 22 C -0.07 -0.48 7.17 -82.33 -0.59 -1.07 16 23 C 0.04 0.28 11.87 -17.35 -0.21 0.07 16 24 N -0.27 -2.64 12.35 30.47 0.38 -2.26 16 25 N -0.04 -0.36 13.35 60.35 0.81 0.44 16 26 N -0.37 -2.12 6.97 33.31 0.23 -1.88 16 27 H 0.45 0.93 8.32 -190.33 -1.58 -0.65 16 28 C 0.11 1.00 6.08 -2.52 -0.02 0.98 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 31 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.37 8.04 -51.93 -0.42 -0.05 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.40 1.05 7.60 -40.82 -0.31 0.74 16 39 H 0.21 1.14 8.06 -52.48 -0.42 0.71 16 40 H 0.07 0.70 8.04 -51.93 -0.42 0.29 16 41 H 0.07 0.63 8.00 -51.93 -0.42 0.21 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -38.09 370.66 -7.79 -45.88 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -6.49 Total: -4.81 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.08 Total: -1.63 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 1.25 Total: -40.77 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.09 -7.79 -45.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744761513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.718 kcal (2) G-P(sol) polarization free energy of solvation -38.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds