Wall clock time and date at job start Tue Mar 31 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48493 * 109.47323 * 240.00249 * 3 2 1 5 5 H 1.48500 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46968 * 120.00110 * 3 2 1 7 7 C 1.38799 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00251 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99862 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46889 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.64993 * 359.97196 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.90064 * 14 13 11 16 16 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 17 17 H 1.09000 * 110.89538 * 277.26533 * 16 15 14 18 18 C 1.52998 * 111.06990 * 153.48436 * 16 15 14 19 19 N 1.46504 * 109.47182 * 181.21215 * 18 16 15 20 20 C 1.34780 * 120.00203 * 180.02562 * 19 18 16 21 21 O 1.21617 * 119.99854 * 359.97438 * 20 19 18 22 22 C 1.47234 * 119.99988 * 179.97438 * 20 19 18 23 23 C 1.37008 * 127.18932 * 179.97438 * 22 20 19 24 24 N 1.33318 * 106.37024 * 179.97438 * 23 22 20 25 25 N 1.28506 * 109.44025 * 0.02562 * 24 23 22 26 26 N 1.28709 * 110.64007 * 359.71084 * 25 24 23 27 27 H 0.97004 * 126.03592 * 180.29845 * 26 25 24 28 28 C 1.47426 * 125.64489 * 180.02562 * 13 11 10 29 29 H 0.96993 * 119.99756 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46773 * 60.00483 * 10 9 7 31 31 H 1.08995 * 109.47418 * 300.00222 * 10 9 7 32 32 H 1.09002 * 109.88241 * 298.39592 * 14 13 11 33 33 H 1.09000 * 109.88049 * 59.40721 * 14 13 11 34 34 H 1.09000 * 110.72188 * 96.24097 * 15 14 13 35 35 H 1.09002 * 110.72265 * 219.52294 * 15 14 13 36 36 H 1.08999 * 109.47428 * 301.20611 * 18 16 15 37 37 H 1.08994 * 109.47354 * 61.21414 * 18 16 15 38 38 H 0.97004 * 119.99898 * 359.97438 * 19 18 16 39 39 H 1.08004 * 126.80915 * 359.97438 * 23 22 20 40 40 H 1.08999 * 110.36956 * 322.93474 * 28 13 11 41 41 H 1.09003 * 110.36599 * 85.25378 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 4.3110 -6.2451 -0.0003 15 6 4.8698 -7.6834 0.0283 16 6 3.6843 -8.5025 0.6105 17 1 3.6692 -8.4446 1.6989 18 6 3.7391 -9.9581 0.1425 19 7 2.5925 -10.6896 0.6870 20 6 2.4327 -11.9980 0.4058 21 8 3.2400 -12.5713 -0.3004 22 6 1.2806 -12.7333 0.9534 23 6 0.9760 -14.0556 0.7637 24 7 -0.1478 -14.2836 1.4438 25 7 -0.5278 -13.1985 2.0180 26 7 0.2922 -12.2396 1.7640 27 1 0.2219 -11.3278 2.0876 28 6 2.4655 -7.7679 -0.0018 29 1 -0.4849 0.8400 0.0004 30 1 3.1244 -3.7314 0.8895 31 1 3.1245 -3.7314 -0.8904 32 1 4.6487 -5.7341 -0.9020 33 1 4.6458 -5.6998 0.8821 34 1 5.1143 -8.0223 -0.9784 35 1 5.7414 -7.7457 0.6798 36 1 3.7071 -9.9911 -0.9465 37 1 4.6631 -10.4179 0.4930 38 1 1.9488 -10.2325 1.2505 39 1 1.5353 -14.7711 0.1792 40 1 1.5794 -7.9255 0.6130 41 1 2.2874 -8.1124 -1.0206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744761513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:18 Heat of formation + Delta-G solvation = -4.565298 kcal Electronic energy + Delta-G solvation = -25559.490631 eV Core-core repulsion = 21601.595407 eV Total energy + Delta-G solvation = -3957.895224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.46882 -41.24450 -40.58576 -38.70900 -36.18941 -34.69607 -34.59955 -33.30360 -32.42364 -30.89252 -30.13254 -27.75775 -27.07064 -25.29775 -24.22085 -23.59402 -22.13865 -21.72428 -20.74936 -20.26824 -19.53149 -18.12729 -17.97789 -17.57455 -17.46309 -17.03875 -16.89334 -16.67770 -16.23327 -15.81095 -15.55385 -15.38029 -15.23556 -14.78649 -14.50967 -14.34114 -13.86188 -13.57415 -13.49119 -13.35109 -13.17766 -13.00989 -12.87624 -12.64868 -12.47524 -12.37877 -12.09240 -11.89539 -11.75330 -11.67251 -11.44163 -11.14122 -11.00366 -10.74018 -10.30696 -10.27029 -9.71642 -8.69723 -8.36058 -6.14873 -0.24821 1.14644 1.23031 1.38156 1.43175 1.44398 1.53555 1.54211 1.81611 1.91425 2.07607 2.26241 2.98118 3.18809 3.23990 3.41336 3.47413 3.61008 3.72499 3.86840 3.90043 4.05772 4.19417 4.23101 4.32323 4.37176 4.43951 4.55558 4.72966 4.76844 4.81851 4.90212 4.96684 5.03529 5.15669 5.27920 5.38786 5.40025 5.59375 6.17042 6.17990 6.34965 6.82687 7.05081 7.08792 7.11917 8.72840 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.001892 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.838956 B =14793.857810 C =15873.253412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.121 4.121 11 C 0.546 3.454 12 O -0.567 6.567 13 N -0.617 5.617 14 C 0.087 3.913 15 C -0.109 4.109 16 C -0.099 4.099 17 H 0.109 0.891 18 C 0.136 3.864 19 N -0.713 5.713 20 C 0.604 3.396 21 O -0.544 6.544 22 C -0.065 4.065 23 C 0.028 3.972 24 N -0.298 5.298 25 N -0.062 5.062 26 N -0.352 5.352 27 H 0.467 0.533 28 C 0.101 3.899 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.410 0.590 39 H 0.221 0.779 40 H 0.070 0.930 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.752 -23.267 3.147 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.272 4.272 11 C 0.334 3.666 12 O -0.446 6.446 13 N -0.352 5.352 14 C -0.035 4.035 15 C -0.147 4.147 16 C -0.119 4.119 17 H 0.128 0.872 18 C 0.013 3.987 19 N -0.364 5.364 20 C 0.388 3.612 21 O -0.420 6.420 22 C -0.200 4.200 23 C -0.133 4.133 24 N -0.163 5.163 25 N -0.044 5.044 26 N -0.082 5.082 27 H 0.317 0.683 28 C -0.021 4.021 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.246 0.754 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.126 -24.315 3.316 26.944 hybrid contribution 1.697 2.487 -0.180 3.016 sum 12.823 -21.828 3.136 25.509 Atomic orbital electron populations 1.70175 1.07977 1.28703 1.47875 1.26139 0.95977 1.03348 0.93708 0.85004 0.77813 0.75651 0.79548 1.18646 1.20471 1.18543 1.23154 0.95326 0.91891 1.59045 0.89864 1.85574 1.10566 0.99307 1.97047 1.23309 1.03366 0.94178 1.06333 1.19738 0.85468 0.86014 0.75399 1.90690 1.17041 1.85767 1.51076 1.48411 1.07962 1.05635 1.73190 1.22394 0.77764 1.00159 1.03178 1.22696 0.97488 0.90613 1.03884 1.22609 0.94504 0.92605 1.02139 0.87237 1.21444 0.88726 0.89125 0.99426 1.45838 1.29208 1.08885 1.52497 1.16635 0.82741 0.81879 0.79991 1.90886 1.43900 1.68711 1.38455 1.22314 0.96393 0.96651 1.04662 1.24325 0.94426 0.94531 0.99976 1.75018 1.12763 1.17661 1.10822 1.78224 1.15197 0.92108 1.18899 1.45622 1.15883 1.14272 1.32431 0.68280 1.22485 0.98820 0.79440 1.01363 0.91979 0.87465 0.87753 0.90626 0.90196 0.88760 0.86563 0.90548 0.88724 0.75418 0.76289 0.91190 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 13.22 21.65 0.29 -54.97 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.55 -30.59 9.50 67.95 0.65 -29.95 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.12 -4.65 5.35 71.24 0.38 -4.27 16 11 C 0.55 19.39 7.87 87.66 0.69 20.08 16 12 O -0.57 -25.40 16.12 -3.05 -0.05 -25.45 16 13 N -0.62 -14.14 3.33 -811.75 -2.70 -16.84 16 14 C 0.09 1.21 6.48 86.73 0.56 1.77 16 15 C -0.11 -0.63 6.45 31.87 0.21 -0.42 16 16 C -0.10 -0.66 3.10 -9.31 -0.03 -0.69 16 17 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 18 C 0.14 0.86 5.13 86.38 0.44 1.30 16 19 N -0.71 -4.96 5.40 -466.56 -2.52 -7.48 16 20 C 0.60 7.57 7.81 86.61 0.68 8.25 16 21 O -0.54 -10.49 16.92 -4.09 -0.07 -10.56 16 22 C -0.06 -0.81 7.17 40.41 0.29 -0.52 16 23 C 0.03 0.41 11.87 84.18 1.00 1.41 16 24 N -0.30 -5.81 12.35 -57.50 -0.71 -6.52 16 25 N -0.06 -1.08 13.35 37.02 0.49 -0.59 16 26 N -0.35 -3.60 6.97 -48.52 -0.34 -3.94 16 27 H 0.47 1.22 8.32 -219.90 -1.83 -0.61 16 28 C 0.10 1.61 6.08 86.86 0.53 2.14 16 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 31 H 0.10 3.67 8.14 -2.40 -0.02 3.65 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 0.42 8.04 -2.39 -0.02 0.40 16 35 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.41 1.09 7.60 -92.71 -0.70 0.38 16 39 H 0.22 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.07 1.21 8.04 -2.39 -0.02 1.20 16 41 H 0.07 1.13 8.00 -2.39 -0.02 1.11 16 Total: -1.00 -86.50 370.66 -0.33 -86.83 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -1.44 Total: 4.03 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 5.86 Total: 0.30 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -5.49 Total: -90.35 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.12 Total: -36.01 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -86.50 -0.33 -86.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744761513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.262 kcal (2) G-P(sol) polarization free energy of solvation -86.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds