Wall clock time and date at job start Tue Mar 31 2020 22:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.47025 * 125.64375 * 0.02562 * 13 11 10 15 15 C 1.54326 * 107.26839 * 181.02269 * 14 13 11 16 16 C 1.55160 * 102.94150 * 22.19995 * 15 14 13 17 17 H 1.08998 * 111.00791 * 82.60430 * 16 15 14 18 18 C 1.53003 * 111.00487 * 206.42195 * 16 15 14 19 19 N 1.46493 * 109.47300 * 185.00021 * 18 16 15 20 20 C 1.34773 * 120.00334 * 179.97438 * 19 18 16 21 21 O 1.21619 * 119.99643 * 0.02562 * 20 19 18 22 22 C 1.47228 * 120.00323 * 179.97438 * 20 19 18 23 23 C 1.37009 * 127.19230 * 179.68154 * 22 20 19 24 24 N 1.33320 * 106.37179 * 179.84873 * 23 22 20 25 25 N 1.28509 * 109.44003 * 0.43158 * 24 23 22 26 26 N 1.28712 * 110.64017 * 359.72767 * 25 24 23 27 27 H 0.96995 * 126.03485 * 180.02562 * 26 25 24 28 28 C 1.47423 * 125.65106 * 179.71993 * 13 11 10 29 29 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 31 31 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 32 32 H 1.08997 * 109.88721 * 300.44164 * 14 13 11 33 33 H 1.09005 * 109.87931 * 61.61506 * 14 13 11 34 34 H 1.09002 * 110.71812 * 140.55468 * 15 14 13 35 35 H 1.08996 * 110.72413 * 263.83488 * 15 14 13 36 36 H 1.09004 * 109.46869 * 304.99970 * 18 16 15 37 37 H 1.09000 * 109.47320 * 64.99690 * 18 16 15 38 38 H 0.97005 * 120.00025 * 359.97438 * 19 18 16 39 39 H 1.08001 * 126.81076 * 0.02562 * 23 22 20 40 40 H 1.09001 * 110.35984 * 274.74376 * 28 13 11 41 41 H 1.08995 * 110.36572 * 37.06219 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0456 -4.4949 0.0045 14 6 5.2271 -5.7162 0.0034 15 6 6.1960 -6.9171 0.0310 16 6 7.4945 -6.3025 0.6174 17 1 7.4505 -6.2614 1.7057 18 6 8.7279 -7.0779 0.1501 19 7 9.9200 -6.5461 0.8151 20 6 11.1304 -7.0791 0.5561 21 8 11.2331 -8.0013 -0.2302 22 6 12.3285 -6.5443 1.2240 23 6 13.6208 -6.9746 1.0761 24 7 14.3669 -6.2023 1.8662 25 7 13.6130 -5.3574 2.4739 26 7 12.3833 -5.5159 2.1281 27 1 11.6288 -4.9985 2.4503 28 6 7.4687 -4.8795 0.0000 29 1 -0.4850 0.8401 -0.0004 30 1 3.6432 -3.4311 0.8927 31 1 3.6439 -3.4323 -0.8873 32 1 4.5881 -5.7351 0.8863 33 1 4.6171 -5.7528 -0.8992 34 1 5.8150 -7.7051 0.6806 35 1 6.3694 -7.2960 -0.9761 36 1 8.6112 -8.1321 0.4019 37 1 8.8363 -6.9721 -0.9293 38 1 9.8381 -5.8104 1.4420 39 1 13.9668 -7.7781 0.4427 40 1 7.8531 -4.8987 -1.0198 41 1 8.0499 -4.1901 0.6124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744761514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:21 Heat of formation + Delta-G solvation = 26.293361 kcal Electronic energy + Delta-G solvation = -25571.260484 eV Core-core repulsion = 21614.703391 eV Total energy + Delta-G solvation = -3956.557092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.91957 -40.51120 -39.80686 -37.77344 -35.57815 -34.12253 -32.58171 -32.49303 -31.78715 -29.92243 -29.31951 -26.49049 -25.65902 -24.66499 -23.57737 -23.00537 -21.64851 -21.24271 -19.86672 -19.47032 -17.82917 -17.49164 -17.04369 -16.92738 -16.75754 -16.32956 -15.79438 -15.25486 -15.04065 -14.91097 -14.79381 -14.53153 -14.12190 -13.93043 -13.59688 -13.07650 -12.93172 -12.82076 -12.76825 -12.55099 -12.06867 -11.93207 -11.82940 -11.56501 -11.34370 -11.32575 -11.26637 -11.06332 -10.85847 -10.68257 -10.17221 -9.92632 -9.83456 -9.67321 -9.06398 -8.76712 -8.58013 -6.99901 -6.34867 -4.07546 0.27845 1.73258 1.82098 2.24378 2.44230 2.56132 2.79317 3.08638 3.28160 3.44782 3.51692 3.69101 3.88589 3.95418 4.09928 4.20025 4.27217 4.38248 4.57832 4.58710 4.65155 4.78288 4.85931 5.03554 5.04264 5.08740 5.15917 5.30224 5.39754 5.41868 5.44039 5.46781 5.56813 5.69905 5.73133 5.91588 5.95617 6.15076 6.57750 7.29927 7.39479 7.68317 7.88040 8.27736 8.35253 9.11073 10.74227 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.001973 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.657963 B =14189.985038 C =15383.702254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.118 4.118 11 C 0.548 3.452 12 O -0.517 6.517 13 N -0.626 5.626 14 C 0.100 3.900 15 C -0.120 4.120 16 C -0.119 4.119 17 H 0.095 0.905 18 C 0.132 3.868 19 N -0.725 5.725 20 C 0.598 3.402 21 O -0.510 6.510 22 C -0.070 4.070 23 C 0.036 3.964 24 N -0.269 5.269 25 N -0.041 5.041 26 N -0.373 5.373 27 H 0.452 0.548 28 C 0.112 3.888 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.398 0.602 39 H 0.206 0.794 40 H 0.070 0.930 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.489 -18.823 3.123 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.269 4.269 11 C 0.336 3.664 12 O -0.392 6.392 13 N -0.363 5.363 14 C -0.024 4.024 15 C -0.159 4.159 16 C -0.138 4.138 17 H 0.113 0.887 18 C 0.009 3.991 19 N -0.377 5.377 20 C 0.381 3.619 21 O -0.383 6.383 22 C -0.205 4.205 23 C -0.123 4.123 24 N -0.134 5.134 25 N -0.023 5.023 26 N -0.101 5.101 27 H 0.299 0.701 28 C -0.012 4.012 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.232 0.768 39 H 0.223 0.777 40 H 0.088 0.912 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.542 -17.197 3.334 27.765 hybrid contribution -2.238 -0.193 -0.140 2.251 sum 19.304 -17.390 3.194 26.177 Atomic orbital electron populations 1.69939 1.05891 1.27817 1.47874 1.24714 0.94468 0.98976 0.93146 0.86734 0.81854 0.83278 0.79970 1.19177 1.19883 1.15971 1.22288 0.88104 0.97553 1.58999 0.89361 1.84800 1.09503 0.99879 1.97435 1.23258 0.93493 1.04373 1.05732 1.20029 0.90665 0.80556 0.75129 1.90709 1.58895 1.41205 1.48363 1.48447 1.06747 1.05435 1.75720 1.22051 0.94179 0.83387 1.02749 1.22624 0.93452 0.97273 1.02504 1.22720 0.94473 0.95111 1.01543 0.88651 1.21441 0.81545 0.98188 0.97951 1.45903 1.06866 1.37885 1.47014 1.16703 0.81169 0.82603 0.81409 1.90900 1.85297 1.27836 1.34302 1.22358 0.98467 0.97510 1.02126 1.23972 0.87841 1.00842 0.99668 1.75050 1.25983 1.03907 1.08466 1.78283 0.86871 1.18649 1.18530 1.45646 1.10238 1.24715 1.29498 0.70136 1.22273 0.83714 0.94209 1.00958 0.91888 0.88503 0.88510 0.90843 0.90759 0.89294 0.89792 0.89953 0.90089 0.76803 0.77746 0.91217 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.97 55.49 0.78 -25.25 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.37 27.74 -169.99 -4.71 16.66 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 7 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 8 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.19 5.35 36.01 0.19 -2.00 16 11 C 0.55 9.26 7.87 -10.98 -0.09 9.18 16 12 O -0.52 -10.67 16.12 5.56 0.09 -10.58 16 13 N -0.63 -7.29 3.32 -170.38 -0.57 -7.86 16 14 C 0.10 0.80 6.48 -3.06 -0.02 0.78 16 15 C -0.12 -0.56 6.42 -24.89 -0.16 -0.72 16 16 C -0.12 -0.56 3.06 -88.35 -0.27 -0.83 16 17 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 18 C 0.13 0.59 5.13 -4.04 -0.02 0.57 16 19 N -0.72 -3.10 5.50 -61.45 -0.34 -3.44 16 20 C 0.60 4.05 7.81 -12.61 -0.10 3.96 16 21 O -0.51 -5.16 16.92 5.26 0.09 -5.07 16 22 C -0.07 -0.45 7.17 -82.33 -0.59 -1.04 16 23 C 0.04 0.27 11.87 -17.35 -0.21 0.06 16 24 N -0.27 -2.54 12.35 30.47 0.38 -2.16 16 25 N -0.04 -0.35 13.35 60.35 0.81 0.46 16 26 N -0.37 -1.94 6.97 33.31 0.23 -1.70 16 27 H 0.45 0.66 8.32 -190.34 -1.58 -0.92 16 28 C 0.11 0.94 6.33 -2.41 -0.02 0.93 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 30 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.34 8.04 -51.93 -0.42 -0.07 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.43 7.96 -51.93 -0.41 0.02 16 38 H 0.40 0.80 7.74 -40.82 -0.32 0.48 16 39 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 41 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -37.83 368.15 -7.27 -45.10 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -6.52 Total: -5.34 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.06 Total: -0.85 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 1.28 Total: -39.96 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.18 Total: -15.65 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.83 -7.27 -45.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744761514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.398 kcal (2) G-P(sol) polarization free energy of solvation -37.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds