Wall clock time and date at job start Tue Mar 31 2020 22:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.47025 * 125.64375 * 0.02562 * 13 11 10 15 15 C 1.54326 * 107.26839 * 181.02269 * 14 13 11 16 16 C 1.55160 * 102.94150 * 22.19995 * 15 14 13 17 17 H 1.08998 * 111.00791 * 82.60430 * 16 15 14 18 18 C 1.53003 * 111.00487 * 206.42195 * 16 15 14 19 19 N 1.46493 * 109.47300 * 185.00021 * 18 16 15 20 20 C 1.34773 * 120.00334 * 179.97438 * 19 18 16 21 21 O 1.21619 * 119.99643 * 0.02562 * 20 19 18 22 22 C 1.47228 * 120.00323 * 179.97438 * 20 19 18 23 23 C 1.37009 * 127.19230 * 179.68154 * 22 20 19 24 24 N 1.33320 * 106.37179 * 179.84873 * 23 22 20 25 25 N 1.28509 * 109.44003 * 0.43158 * 24 23 22 26 26 N 1.28712 * 110.64017 * 359.72767 * 25 24 23 27 27 H 0.96995 * 126.03485 * 180.02562 * 26 25 24 28 28 C 1.47423 * 125.65106 * 179.71993 * 13 11 10 29 29 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 31 31 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 32 32 H 1.08997 * 109.88721 * 300.44164 * 14 13 11 33 33 H 1.09005 * 109.87931 * 61.61506 * 14 13 11 34 34 H 1.09002 * 110.71812 * 140.55468 * 15 14 13 35 35 H 1.08996 * 110.72413 * 263.83488 * 15 14 13 36 36 H 1.09004 * 109.46869 * 304.99970 * 18 16 15 37 37 H 1.09000 * 109.47320 * 64.99690 * 18 16 15 38 38 H 0.97005 * 120.00025 * 359.97438 * 19 18 16 39 39 H 1.08001 * 126.81076 * 0.02562 * 23 22 20 40 40 H 1.09001 * 110.35984 * 274.74376 * 28 13 11 41 41 H 1.08995 * 110.36572 * 37.06219 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0456 -4.4949 0.0045 14 6 5.2271 -5.7162 0.0034 15 6 6.1960 -6.9171 0.0310 16 6 7.4945 -6.3025 0.6174 17 1 7.4505 -6.2614 1.7057 18 6 8.7279 -7.0779 0.1501 19 7 9.9200 -6.5461 0.8151 20 6 11.1304 -7.0791 0.5561 21 8 11.2331 -8.0013 -0.2302 22 6 12.3285 -6.5443 1.2240 23 6 13.6208 -6.9746 1.0761 24 7 14.3669 -6.2023 1.8662 25 7 13.6130 -5.3574 2.4739 26 7 12.3833 -5.5159 2.1281 27 1 11.6288 -4.9985 2.4503 28 6 7.4687 -4.8795 0.0000 29 1 -0.4850 0.8401 -0.0004 30 1 3.6432 -3.4311 0.8927 31 1 3.6439 -3.4323 -0.8873 32 1 4.5881 -5.7351 0.8863 33 1 4.6171 -5.7528 -0.8992 34 1 5.8150 -7.7051 0.6806 35 1 6.3694 -7.2960 -0.9761 36 1 8.6112 -8.1321 0.4019 37 1 8.8363 -6.9721 -0.9293 38 1 9.8381 -5.8104 1.4420 39 1 13.9668 -7.7781 0.4427 40 1 7.8531 -4.8987 -1.0198 41 1 8.0499 -4.1901 0.6124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744761514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:21 Heat of formation + Delta-G solvation = -4.018303 kcal Electronic energy + Delta-G solvation = -25572.574896 eV Core-core repulsion = 21614.703391 eV Total energy + Delta-G solvation = -3957.871505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.46602 -41.26366 -40.60147 -38.73721 -36.19972 -34.70537 -34.68148 -33.32941 -32.43236 -30.94665 -30.15297 -27.91005 -27.11364 -25.28842 -24.23368 -23.60848 -22.15628 -21.74504 -20.79748 -20.27078 -19.56193 -18.16278 -18.00309 -17.58335 -17.48295 -17.14702 -17.01390 -16.67592 -16.17650 -15.79122 -15.61732 -15.37442 -15.19650 -14.91865 -14.77200 -14.36638 -13.89698 -13.63083 -13.54298 -13.35538 -13.34815 -13.05617 -13.02393 -12.69160 -12.47230 -12.37694 -12.06300 -11.89222 -11.87942 -11.68412 -11.44155 -11.18807 -11.05621 -10.73892 -10.56263 -10.26727 -9.74254 -9.02807 -8.53143 -6.24561 -0.24680 0.94995 1.14699 1.30129 1.38293 1.43956 1.48449 1.52056 1.81999 1.91621 2.04317 2.23258 2.66042 2.85091 3.21758 3.32805 3.46513 3.60363 3.70822 3.81424 3.87849 4.05710 4.13632 4.22611 4.30763 4.36867 4.39949 4.56314 4.73377 4.75204 4.82025 4.90189 4.95407 5.03069 5.15286 5.26801 5.37269 5.60324 5.69036 6.09659 6.17922 6.31413 6.83509 6.91925 7.02893 7.12045 8.59035 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.001973 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.657963 B =14189.985038 C =15383.702254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.176 6.176 10 C -0.103 4.103 11 C 0.547 3.453 12 O -0.564 6.564 13 N -0.616 5.616 14 C 0.086 3.914 15 C -0.110 4.110 16 C -0.099 4.099 17 H 0.111 0.889 18 C 0.135 3.865 19 N -0.711 5.711 20 C 0.604 3.396 21 O -0.545 6.545 22 C -0.064 4.064 23 C 0.027 3.973 24 N -0.299 5.299 25 N -0.062 5.062 26 N -0.351 5.351 27 H 0.467 0.533 28 C 0.102 3.898 29 H 0.277 0.723 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.411 0.589 39 H 0.220 0.780 40 H 0.070 0.930 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.175 -20.252 3.548 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.254 4.254 11 C 0.335 3.665 12 O -0.443 6.443 13 N -0.350 5.350 14 C -0.036 4.036 15 C -0.148 4.148 16 C -0.118 4.118 17 H 0.129 0.871 18 C 0.012 3.988 19 N -0.363 5.363 20 C 0.387 3.613 21 O -0.420 6.420 22 C -0.200 4.200 23 C -0.133 4.133 24 N -0.163 5.163 25 N -0.044 5.044 26 N -0.081 5.081 27 H 0.318 0.682 28 C -0.020 4.020 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.247 0.753 39 H 0.236 0.764 40 H 0.088 0.912 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.206 -18.650 3.793 29.245 hybrid contribution -2.485 0.067 -0.294 2.504 sum 19.720 -18.582 3.498 27.321 Atomic orbital electron populations 1.70017 1.07250 1.29025 1.49011 1.25559 0.95289 1.02232 0.92909 0.85874 0.80698 0.79655 0.80187 1.18792 1.18326 1.16032 1.22432 0.90114 0.96690 1.58354 0.91901 1.84711 1.06604 1.06103 1.97575 1.23213 0.95718 0.99467 1.07012 1.19614 0.89358 0.81961 0.75581 1.90688 1.59367 1.43076 1.51152 1.48392 1.08973 1.04702 1.72977 1.22418 0.94968 0.83003 1.03215 1.22653 0.92113 0.96168 1.03885 1.22603 0.94715 0.92325 1.02158 0.87083 1.21441 0.81035 0.98650 0.97673 1.45821 1.06180 1.37707 1.46623 1.16640 0.81610 0.82146 0.80891 1.90891 1.85766 1.29465 1.35910 1.22297 0.98163 0.97476 1.02017 1.24320 0.88239 1.01107 0.99653 1.75022 1.27010 1.04778 1.09490 1.78221 0.87859 1.19088 1.19230 1.45610 1.10041 1.24067 1.28422 0.68229 1.22557 0.81516 0.96450 1.01456 0.91354 0.87069 0.87371 0.90159 0.90607 0.86717 0.88758 0.88824 0.90601 0.75310 0.76380 0.91190 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.81 13.97 21.65 0.30 -54.51 16 2 C 0.05 2.64 5.50 84.86 0.47 3.10 16 3 Si 0.91 44.23 27.74 68.60 1.90 46.13 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.24 -11.39 6.74 99.48 0.67 -10.72 16 7 C -0.53 -30.15 10.04 67.95 0.68 -29.47 16 8 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 9 S -0.18 -8.72 18.55 -56.49 -1.05 -9.77 16 10 C -0.10 -3.76 5.35 71.24 0.38 -3.38 16 11 C 0.55 17.93 7.87 87.66 0.69 18.62 16 12 O -0.56 -23.10 16.12 -3.02 -0.05 -23.15 16 13 N -0.62 -13.01 3.32 -811.34 -2.70 -15.71 16 14 C 0.09 1.12 6.48 86.73 0.56 1.68 16 15 C -0.11 -0.57 6.42 31.78 0.20 -0.36 16 16 C -0.10 -0.55 3.06 -9.32 -0.03 -0.58 16 17 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 18 C 0.13 0.73 5.13 86.38 0.44 1.18 16 19 N -0.71 -4.03 5.50 -466.58 -2.57 -6.60 16 20 C 0.60 6.96 7.81 86.61 0.68 7.64 16 21 O -0.54 -10.14 16.92 -4.09 -0.07 -10.21 16 22 C -0.06 -0.73 7.17 40.40 0.29 -0.44 16 23 C 0.03 0.38 11.87 84.18 1.00 1.38 16 24 N -0.30 -5.53 12.35 -57.50 -0.71 -6.24 16 25 N -0.06 -1.00 13.35 37.02 0.49 -0.51 16 26 N -0.35 -3.10 6.97 -48.52 -0.34 -3.44 16 27 H 0.47 0.40 8.32 -219.91 -1.83 -1.43 16 28 C 0.10 1.47 6.33 86.93 0.55 2.02 16 29 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 30 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 31 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.09 0.37 8.04 -2.39 -0.02 0.35 16 36 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.57 7.96 -2.39 -0.02 0.55 16 38 H 0.41 0.34 7.74 -92.70 -0.72 -0.37 16 39 H 0.22 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.07 1.05 7.91 -2.39 -0.02 1.03 16 41 H 0.07 1.12 8.03 -2.39 -0.02 1.10 16 Total: -1.00 -83.89 368.15 -0.35 -84.24 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -1.49 Total: -1.64 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.92 Total: 1.39 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -5.52 Total: -87.00 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.12 Total: -33.35 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.13 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -83.89 -0.35 -84.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744761514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.224 kcal (2) G-P(sol) polarization free energy of solvation -83.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds