Wall clock time and date at job start Tue Mar 31 2020 22:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30826 * 125.96200 * 2 1 4 4 C 1.33238 * 109.83173 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52818 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46984 * 90.00242 * 5 4 3 7 7 O 1.21274 * 119.99738 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99628 * 180.02562 * 6 5 4 9 9 C 1.47061 * 136.06008 * 359.62603 * 8 6 5 10 10 C 1.53758 * 87.88844 * 152.96660 * 9 8 6 11 11 N 1.46501 * 114.26568 * 139.79125 * 10 9 8 12 12 C 1.34777 * 119.99969 * 111.47856 * 11 10 9 13 13 O 1.21284 * 119.99817 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00039 * 180.02562 * 12 11 10 15 15 S 1.81002 * 109.46974 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99907 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00396 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00267 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99458 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00343 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47250 * 89.99879 * 20 18 16 22 22 H 1.48497 * 109.47052 * 210.00279 * 20 18 16 23 23 H 1.48500 * 109.46743 * 329.99743 * 20 18 16 24 24 C 1.47069 * 136.05351 * 179.97438 * 8 6 5 25 25 N 1.30712 * 108.94325 * 359.75797 * 4 3 2 26 26 N 1.34430 * 125.95959 * 180.02562 * 2 1 3 27 27 H 0.97001 * 126.82220 * 359.92287 * 26 2 1 28 28 H 1.08996 * 109.47096 * 269.95921 * 1 2 3 29 29 H 1.08994 * 109.47164 * 29.96092 * 1 2 3 30 30 H 1.09005 * 109.46768 * 149.95951 * 1 2 3 31 31 H 1.08994 * 109.47091 * 210.00258 * 5 4 3 32 32 H 1.08999 * 109.47214 * 330.00395 * 5 4 3 33 33 H 1.09005 * 113.46605 * 267.69715 * 9 8 6 34 34 H 1.09004 * 113.46652 * 38.13433 * 9 8 6 35 35 H 1.08998 * 114.39384 * 272.67658 * 10 9 8 36 36 H 0.97000 * 120.00180 * 291.47872 * 11 10 9 37 37 H 1.09004 * 109.47151 * 299.99456 * 14 12 11 38 38 H 1.08999 * 109.47523 * 60.00070 * 14 12 11 39 39 H 0.97000 * 119.99914 * 180.02562 * 19 18 16 40 40 H 1.08995 * 113.46949 * 321.86925 * 24 8 6 41 41 H 1.09007 * 113.46745 * 92.24523 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0013 6 6 5.1320 1.9354 1.4193 7 8 4.5140 1.4470 2.3414 8 7 6.1711 2.7579 1.6649 9 6 7.1372 3.5146 0.8545 10 6 7.2548 4.5063 2.0235 11 7 8.6185 4.9768 2.2791 12 6 8.9454 6.2610 2.0334 13 8 8.1108 7.0270 1.6003 14 6 10.3483 6.7448 2.2957 15 16 10.4710 8.4996 1.8693 16 6 12.1633 8.7925 2.2628 17 1 12.7759 7.9891 2.6444 18 6 12.7092 10.0559 2.0824 19 7 11.9626 11.0350 1.6169 20 14 14.5035 10.3663 2.4990 21 1 15.3420 10.1049 1.3016 22 1 14.6756 11.7783 2.9253 23 1 14.9192 9.4623 3.6014 24 6 6.8416 3.2887 2.8614 25 7 3.6194 -0.6168 0.0043 26 7 2.2964 -1.0881 -0.0005 27 1 2.0093 -2.0147 0.0001 28 1 -0.3633 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 5.5740 1.1509 -0.5155 32 1 4.4699 2.5470 -0.5151 33 1 8.0587 2.9677 0.6549 34 1 6.7020 3.9507 -0.0447 35 1 6.5177 5.3092 2.0086 36 1 9.2861 4.3640 2.6251 37 1 10.5882 6.6092 3.3504 38 1 11.0494 6.1736 1.6873 39 1 12.3442 11.9178 1.4904 40 1 6.1546 3.5324 3.6718 41 1 7.6845 2.6817 3.1918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745817913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:52 Heat of formation + Delta-G solvation = 22.757987 kcal Electronic energy + Delta-G solvation = -24988.218219 eV Core-core repulsion = 21031.507822 eV Total energy + Delta-G solvation = -3956.710398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.23492 -41.74032 -40.31677 -38.92752 -34.96236 -34.73039 -34.54127 -33.41117 -31.91325 -30.85082 -29.23612 -28.38854 -27.60170 -27.02763 -23.64064 -22.50680 -21.81162 -21.66314 -20.13801 -19.71272 -18.94766 -18.39951 -17.98102 -17.54535 -17.15770 -16.84165 -16.54700 -16.36247 -16.23021 -15.86557 -15.25662 -14.98969 -14.71932 -14.56702 -14.39859 -14.13913 -13.76768 -13.68195 -13.64519 -13.51401 -13.34170 -13.12301 -13.06403 -12.86452 -12.77943 -12.57932 -12.19387 -11.70188 -11.42832 -11.16667 -11.10726 -11.09590 -10.89545 -10.52716 -10.21682 -10.12488 -9.87746 -8.61317 -8.31205 -6.08132 0.49160 1.24875 1.38690 1.42852 1.45011 1.52965 1.61161 1.62384 1.68763 1.91332 2.30450 2.41853 2.93788 3.03364 3.22786 3.36629 3.43750 3.49913 3.77959 3.84360 3.98263 4.12334 4.30702 4.33907 4.38837 4.40739 4.54684 4.59163 4.60004 4.67467 4.69722 4.74994 4.95128 5.02950 5.18199 5.28885 5.45395 5.46279 6.16283 6.23580 6.46106 6.57430 6.93493 7.00909 7.10840 7.26817 8.77783 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.043249 B = 0.001530 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.255388 B =18300.610216 C =18524.504918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.287 3.713 3 N -0.571 5.571 4 C 0.233 3.767 5 C -0.039 4.039 6 C 0.555 3.445 7 O -0.580 6.580 8 N -0.645 5.645 9 C 0.090 3.910 10 C 0.113 3.887 11 N -0.695 5.695 12 C 0.541 3.459 13 O -0.561 6.561 14 C -0.131 4.131 15 S -0.153 6.153 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.258 1.258 24 C 0.100 3.900 25 N -0.335 5.335 26 N -0.474 5.474 27 H 0.456 0.544 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.423 0.577 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.076 0.924 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.810 -27.643 -3.679 32.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.009 3.991 3 N -0.302 5.302 4 C -0.050 4.050 5 C -0.080 4.080 6 C 0.344 3.656 7 O -0.460 6.460 8 N -0.380 5.380 9 C -0.033 4.033 10 C 0.006 3.994 11 N -0.350 5.350 12 C 0.327 3.673 13 O -0.438 6.438 14 C -0.282 4.282 15 S 0.074 5.926 16 C -0.693 4.693 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.182 1.182 24 C -0.024 4.024 25 N -0.165 5.165 26 N -0.194 5.194 27 H 0.305 0.695 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.135 0.865 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.261 0.739 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.155 -26.661 -4.002 32.502 hybrid contribution 1.786 -1.150 0.960 2.331 sum -16.369 -27.810 -3.042 32.413 Atomic orbital electron populations 1.20659 0.80063 1.06817 1.05865 1.25242 0.98323 0.81974 0.93546 1.70302 1.01740 1.31472 1.26648 1.23632 0.93390 0.90135 0.97877 1.19905 0.94151 0.99800 0.94162 1.20065 0.78151 0.76180 0.91155 1.90719 1.54292 1.52942 1.48028 1.49179 1.29451 1.46760 1.12597 1.23863 0.92852 0.89930 0.96653 1.22628 0.85031 0.95141 0.96617 1.45428 1.12249 1.10045 1.67270 1.20047 0.88893 0.82181 0.76136 1.90718 1.51764 1.55958 1.45348 1.23385 0.97002 1.01223 1.06573 1.85599 1.15537 1.05208 1.86209 1.23222 0.96092 0.99524 1.50480 0.89784 1.26085 1.03966 0.94706 0.94303 1.70182 1.38397 1.02482 1.43739 0.84988 0.76556 0.77677 0.78985 1.19351 1.20574 1.18200 1.23446 0.97033 0.91703 0.90171 1.77837 0.98905 1.12354 1.27398 1.47869 1.03213 1.11032 1.57283 0.69533 0.87843 0.87960 0.86495 0.83794 0.84101 0.86052 0.88200 0.87160 0.73882 0.87045 0.86626 0.92089 0.90546 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.29 4.60 8.24 138.23 1.14 5.74 16 3 N -0.57 -13.54 11.19 -179.72 -2.01 -15.55 16 4 C 0.23 5.51 6.63 138.63 0.92 6.43 16 5 C -0.04 -0.69 6.16 29.10 0.18 -0.51 16 6 C 0.55 12.99 8.07 87.66 0.71 13.70 16 7 O -0.58 -19.15 16.81 -3.01 -0.05 -19.20 16 8 N -0.64 -11.60 3.69 -857.89 -3.16 -14.77 16 9 C 0.09 1.18 8.25 83.27 0.69 1.86 16 10 C 0.11 2.02 4.62 45.54 0.21 2.23 16 11 N -0.70 -13.35 5.39 -441.55 -2.38 -15.73 16 12 C 0.54 17.27 7.85 87.66 0.69 17.95 16 13 O -0.56 -23.54 15.45 -3.04 -0.05 -23.58 16 14 C -0.13 -4.63 6.16 71.23 0.44 -4.19 16 15 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 16 C -0.55 -30.10 9.50 67.95 0.65 -29.46 16 17 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 18 C 0.01 0.79 5.49 84.86 0.47 1.25 16 19 N -0.91 -55.02 13.22 21.65 0.29 -54.73 16 20 Si 1.00 42.61 29.55 68.60 2.03 44.64 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 24 C 0.10 1.58 8.38 83.17 0.70 2.27 16 25 N -0.34 -7.74 12.80 -51.33 -0.66 -8.39 16 26 N -0.47 -7.31 7.45 -50.70 -0.38 -7.69 16 27 H 0.46 3.18 8.96 -213.10 -1.91 1.27 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.12 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 2.61 7.45 -2.39 -0.02 2.60 16 36 H 0.42 4.90 8.76 -92.71 -0.81 4.08 16 37 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.12 3.57 8.14 -2.40 -0.02 3.55 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -93.32 378.13 -1.64 -94.95 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -1.63 Total: 11.65 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 7.53 Total: 17.67 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -8.30 Total: -116.86 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.10 Total: -42.78 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -93.32 -1.64 -94.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745817913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.711 kcal (2) G-P(sol) polarization free energy of solvation -93.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds