Wall clock time and date at job start Tue Mar 31 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47269 * 299.99979 * 3 2 1 6 6 H 1.48497 * 109.47235 * 60.00137 * 3 2 1 7 7 C 1.38794 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00455 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.80989 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47203 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.53945 * 113.73910 * 253.46317 * 14 13 11 16 16 N 1.47812 * 86.03456 * 222.08214 * 15 14 13 17 17 C 1.34779 * 134.45416 * 204.64465 * 16 15 14 18 18 O 1.21278 * 119.99715 * 179.86628 * 17 16 15 19 19 C 1.50699 * 120.00191 * 359.86759 * 17 16 15 20 20 C 1.52996 * 109.46969 * 179.97438 * 19 17 16 21 21 N 1.46507 * 109.46952 * 179.97438 * 20 19 17 22 22 C 1.34433 * 126.82026 * 124.71250 * 21 20 19 23 23 N 1.30827 * 108.07508 * 179.89717 * 22 21 20 24 24 C 1.33240 * 109.83259 * 0.37644 * 23 22 21 25 25 N 1.30713 * 108.94426 * 359.76652 * 24 23 22 26 26 C 1.47575 * 91.05141 * 24.55179 * 16 15 14 27 27 H 0.97004 * 119.99966 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47307 * 60.00332 * 10 9 7 29 29 H 1.08998 * 109.47675 * 300.00200 * 10 9 7 30 30 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 31 31 H 1.09003 * 112.94203 * 25.05174 * 14 13 11 32 32 H 1.09000 * 113.76882 * 336.34852 * 15 14 13 33 33 H 1.09003 * 113.76806 * 107.74612 * 15 14 13 34 34 H 1.09000 * 109.47100 * 299.99805 * 19 17 16 35 35 H 1.09004 * 109.47130 * 59.99614 * 19 17 16 36 36 H 1.08996 * 109.47447 * 300.00292 * 20 19 17 37 37 H 1.09002 * 109.47431 * 60.00456 * 20 19 17 38 38 H 1.08000 * 125.96142 * 0.03864 * 22 21 20 39 39 H 1.07997 * 125.53392 * 179.73099 * 24 23 22 40 40 H 1.09004 * 113.77027 * 221.15697 * 26 16 15 41 41 H 1.08996 * 113.77596 * 89.75482 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8913 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8441 -6.3430 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 6 2.4872 -8.4367 1.3488 16 7 2.8960 -9.6149 0.5553 17 6 2.8807 -10.9461 0.7657 18 8 3.2903 -11.7002 -0.0914 19 6 2.3548 -11.4976 2.0658 20 6 2.4480 -13.0246 2.0469 21 7 1.9372 -13.5606 3.3111 22 6 0.9592 -14.4702 3.4640 23 7 0.8012 -14.6849 4.7448 24 6 1.6508 -13.9282 5.4382 25 7 2.3679 -13.2219 4.6043 26 6 3.3251 -8.7489 -0.5599 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 3.8009 -6.1834 -0.0041 31 1 1.3302 -7.7939 -0.4281 32 1 3.2824 -8.0307 1.9741 33 1 1.5486 -8.5718 1.8863 34 1 2.9482 -11.1071 2.8926 35 1 1.3142 -11.1989 2.1927 36 1 1.8544 -13.4147 1.2202 37 1 3.4885 -13.3236 1.9200 38 1 0.4028 -14.9429 2.6682 39 1 1.7332 -13.9021 6.5147 40 1 3.0543 -9.1327 -1.5435 41 1 4.3669 -8.4348 -0.4966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745818928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:26 Heat of formation + Delta-G solvation = 60.223109 kcal Electronic energy + Delta-G solvation = -24945.557903 eV Core-core repulsion = 20990.472115 eV Total energy + Delta-G solvation = -3955.085788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.47402 -40.94210 -39.34421 -38.03688 -35.31166 -33.87313 -32.48965 -31.65008 -31.41730 -29.98217 -28.33479 -26.78691 -25.56913 -25.12660 -22.43544 -22.38511 -21.59557 -20.69388 -19.42659 -18.20839 -17.91625 -17.14720 -17.07040 -16.65449 -16.43931 -15.87238 -15.57104 -15.29196 -15.00868 -14.86093 -14.66858 -14.40658 -13.87004 -13.65233 -13.57571 -13.32862 -13.18483 -13.04376 -12.61968 -12.59423 -12.46293 -12.09504 -11.83601 -11.59486 -11.11729 -11.08642 -10.81901 -10.57091 -10.39765 -10.22061 -10.12632 -9.87682 -9.59106 -9.28856 -9.16448 -9.11359 -8.31908 -6.57754 -6.27995 -3.99305 1.17891 1.73521 2.08078 2.24537 2.55994 2.84454 2.94520 3.17489 3.23939 3.27966 3.59097 3.74294 3.89414 3.94435 4.07922 4.14189 4.19019 4.41614 4.51107 4.60706 4.72118 4.73981 4.90709 5.00220 5.06516 5.07721 5.10090 5.18442 5.20369 5.26563 5.48078 5.73519 5.77696 5.78418 5.99116 6.03485 6.31566 6.35001 7.11918 7.46024 7.54148 7.57802 7.64539 8.29180 8.39457 9.17799 10.79442 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022896 B = 0.001608 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.631786 B =17407.572446 C =18095.079384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.155 4.155 11 C 0.536 3.464 12 O -0.512 6.512 13 N -0.729 5.729 14 C 0.119 3.881 15 C 0.084 3.916 16 N -0.641 5.641 17 C 0.547 3.453 18 O -0.542 6.542 19 C -0.148 4.148 20 C 0.147 3.853 21 N -0.381 5.381 22 C 0.257 3.743 23 N -0.548 5.548 24 C 0.199 3.801 25 N -0.320 5.320 26 C 0.101 3.899 27 H 0.268 0.732 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.403 0.597 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.220 0.780 39 H 0.218 0.782 40 H 0.092 0.908 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 -25.696 4.332 27.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.385 6.385 13 N -0.384 5.384 14 C 0.012 3.988 15 C -0.040 4.040 16 N -0.378 5.378 17 C 0.336 3.664 18 O -0.420 6.420 19 C -0.188 4.188 20 C 0.024 3.976 21 N -0.172 5.172 22 C -0.039 4.039 23 N -0.275 5.275 24 C -0.103 4.103 25 N -0.148 5.148 26 C -0.022 4.022 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.237 0.763 31 H 0.147 0.853 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.236 0.764 39 H 0.234 0.766 40 H 0.111 0.889 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.792 -26.230 4.196 27.188 hybrid contribution 2.417 1.398 -0.108 2.794 sum 8.208 -24.832 4.088 26.471 Atomic orbital electron populations 1.70020 1.05965 1.27438 1.46796 1.24995 0.95031 0.99076 0.94453 0.86111 0.79572 0.81831 0.77947 1.19607 1.20539 1.20540 1.22899 0.94945 0.91557 1.59056 0.90810 1.85418 1.04723 0.96441 1.96744 1.23544 1.06783 0.95052 1.05149 1.20416 0.86508 0.86330 0.74507 1.90718 1.15345 1.85497 1.46967 1.45930 1.10173 1.04488 1.77785 1.22887 0.99986 0.80751 0.95220 1.23961 1.01343 0.82093 0.96588 1.49726 1.63426 1.03859 1.20740 1.19898 0.77974 0.80196 0.88300 1.90747 1.48394 1.56562 1.46250 1.21812 1.04628 0.95432 0.96956 1.21536 1.02540 0.92991 0.80499 1.50611 1.28113 1.32055 1.06428 1.26151 0.90476 0.91137 0.96181 1.70569 1.26959 1.27609 1.02389 1.26055 0.91172 0.91880 1.01235 1.78044 1.24223 1.24720 0.87778 1.23558 0.99247 0.86868 0.92526 0.92174 0.89005 0.88998 0.76264 0.85345 0.88750 0.89039 0.87247 0.88014 0.86971 0.88261 0.76372 0.76616 0.88917 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.72 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 11 C 0.54 8.62 7.85 -10.98 -0.09 8.53 16 12 O -0.51 -10.36 15.48 5.56 0.09 -10.28 16 13 N -0.73 -7.51 5.37 -55.34 -0.30 -7.81 16 14 C 0.12 1.06 4.40 -70.15 -0.31 0.75 16 15 C 0.08 0.62 8.43 -2.84 -0.02 0.59 16 16 N -0.64 -5.21 3.61 -178.35 -0.64 -5.85 16 17 C 0.55 4.84 8.06 -10.98 -0.09 4.75 16 18 O -0.54 -6.43 16.71 5.56 0.09 -6.34 16 19 C -0.15 -0.94 5.66 -27.89 -0.16 -1.10 16 20 C 0.15 0.86 5.84 -4.04 -0.02 0.83 16 21 N -0.38 -2.79 3.69 -62.63 -0.23 -3.02 16 22 C 0.26 1.68 12.63 -90.65 -1.14 0.54 16 23 N -0.55 -4.88 11.19 -15.83 -0.18 -5.06 16 24 C 0.20 1.64 13.03 -91.81 -1.20 0.45 16 25 N -0.32 -2.95 12.57 29.29 0.37 -2.58 16 26 C 0.10 0.75 8.59 -2.97 -0.03 0.72 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 29 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 30 H 0.40 2.93 8.71 -40.82 -0.36 2.58 16 31 H 0.13 1.39 7.50 -51.93 -0.39 1.00 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.11 0.46 8.04 -51.93 -0.42 0.04 16 37 H 0.10 0.64 8.10 -51.93 -0.42 0.21 16 38 H 0.22 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.22 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -38.11 378.62 -9.59 -47.70 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.35 Total: -0.77 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.64 Total: 1.01 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.25 Total: -49.06 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.18 Total: -16.61 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.11 -9.59 -47.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745818928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.919 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds