Wall clock time and date at job start Tue Mar 31 2020 22:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47269 * 299.99979 * 3 2 1 6 6 H 1.48497 * 109.47235 * 60.00137 * 3 2 1 7 7 C 1.38794 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00455 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.80989 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47203 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.53945 * 113.73910 * 253.46317 * 14 13 11 16 16 N 1.47812 * 86.03456 * 222.08214 * 15 14 13 17 17 C 1.34779 * 134.45416 * 204.64465 * 16 15 14 18 18 O 1.21278 * 119.99715 * 179.86628 * 17 16 15 19 19 C 1.50699 * 120.00191 * 359.86759 * 17 16 15 20 20 C 1.52996 * 109.46969 * 179.97438 * 19 17 16 21 21 N 1.46507 * 109.46952 * 179.97438 * 20 19 17 22 22 C 1.34433 * 126.82026 * 124.71250 * 21 20 19 23 23 N 1.30827 * 108.07508 * 179.89717 * 22 21 20 24 24 C 1.33240 * 109.83259 * 0.37644 * 23 22 21 25 25 N 1.30713 * 108.94426 * 359.76652 * 24 23 22 26 26 C 1.47575 * 91.05141 * 24.55179 * 16 15 14 27 27 H 0.97004 * 119.99966 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47307 * 60.00332 * 10 9 7 29 29 H 1.08998 * 109.47675 * 300.00200 * 10 9 7 30 30 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 31 31 H 1.09003 * 112.94203 * 25.05174 * 14 13 11 32 32 H 1.09000 * 113.76882 * 336.34852 * 15 14 13 33 33 H 1.09003 * 113.76806 * 107.74612 * 15 14 13 34 34 H 1.09000 * 109.47100 * 299.99805 * 19 17 16 35 35 H 1.09004 * 109.47130 * 59.99614 * 19 17 16 36 36 H 1.08996 * 109.47447 * 300.00292 * 20 19 17 37 37 H 1.09002 * 109.47431 * 60.00456 * 20 19 17 38 38 H 1.08000 * 125.96142 * 0.03864 * 22 21 20 39 39 H 1.07997 * 125.53392 * 179.73099 * 24 23 22 40 40 H 1.09004 * 113.77027 * 221.15697 * 26 16 15 41 41 H 1.08996 * 113.77596 * 89.75482 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8913 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8441 -6.3430 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 6 2.4872 -8.4367 1.3488 16 7 2.8960 -9.6149 0.5553 17 6 2.8807 -10.9461 0.7657 18 8 3.2903 -11.7002 -0.0914 19 6 2.3548 -11.4976 2.0658 20 6 2.4480 -13.0246 2.0469 21 7 1.9372 -13.5606 3.3111 22 6 0.9592 -14.4702 3.4640 23 7 0.8012 -14.6849 4.7448 24 6 1.6508 -13.9282 5.4382 25 7 2.3679 -13.2219 4.6043 26 6 3.3251 -8.7489 -0.5599 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 3.8009 -6.1834 -0.0041 31 1 1.3302 -7.7939 -0.4281 32 1 3.2824 -8.0307 1.9741 33 1 1.5486 -8.5718 1.8863 34 1 2.9482 -11.1071 2.8926 35 1 1.3142 -11.1989 2.1927 36 1 1.8544 -13.4147 1.2202 37 1 3.4885 -13.3236 1.9200 38 1 0.4028 -14.9429 2.6682 39 1 1.7332 -13.9021 6.5147 40 1 3.0543 -9.1327 -1.5435 41 1 4.3669 -8.4348 -0.4966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745818928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:25 Heat of formation + Delta-G solvation = 33.589437 kcal Electronic energy + Delta-G solvation = -24946.712825 eV Core-core repulsion = 20990.472115 eV Total energy + Delta-G solvation = -3956.240711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.01026 -41.70499 -40.40122 -38.94188 -35.85969 -34.94711 -34.56455 -32.23016 -32.07649 -31.09203 -29.28302 -27.64408 -27.39690 -25.72284 -23.17601 -22.92873 -22.23261 -21.79884 -20.14579 -19.75297 -18.77333 -18.07329 -17.77758 -17.52888 -17.28243 -16.86551 -16.61817 -16.41586 -16.19623 -15.97666 -15.75296 -15.12672 -14.88205 -14.69025 -14.44513 -14.32576 -14.17091 -13.83052 -13.62328 -13.51112 -13.17725 -13.13957 -13.06120 -12.90777 -12.58697 -12.38202 -12.33472 -11.69959 -11.29402 -11.14583 -11.02858 -10.92676 -10.80975 -10.66982 -10.24166 -10.20054 -9.89402 -8.63852 -8.33626 -6.10643 0.65851 1.19343 1.29294 1.40385 1.42328 1.47869 1.56787 1.58276 1.71260 2.00706 2.27902 2.36311 3.01126 3.13516 3.33620 3.39128 3.43424 3.53402 3.69023 3.76635 3.95405 4.03344 4.10126 4.17399 4.26698 4.33908 4.36168 4.48795 4.56775 4.57790 4.61703 4.65321 4.73149 4.91109 5.26014 5.41591 5.44338 5.45594 5.86034 6.21596 6.41901 6.52155 6.89723 7.08657 7.10673 7.22936 8.75576 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022896 B = 0.001608 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.631786 B =17407.572446 C =18095.079384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.131 4.131 11 C 0.541 3.459 12 O -0.561 6.561 13 N -0.699 5.699 14 C 0.113 3.887 15 C 0.093 3.907 16 N -0.644 5.644 17 C 0.547 3.453 18 O -0.574 6.574 19 C -0.136 4.136 20 C 0.148 3.852 21 N -0.384 5.384 22 C 0.262 3.738 23 N -0.580 5.580 24 C 0.193 3.807 25 N -0.351 5.351 26 C 0.107 3.893 27 H 0.270 0.730 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.422 0.578 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.258 0.742 39 H 0.238 0.762 40 H 0.090 0.910 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.521 -26.203 4.452 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.283 4.283 11 C 0.327 3.673 12 O -0.438 6.438 13 N -0.354 5.354 14 C 0.006 3.994 15 C -0.031 4.031 16 N -0.379 5.379 17 C 0.338 3.662 18 O -0.455 6.455 19 C -0.177 4.177 20 C 0.027 3.973 21 N -0.175 5.175 22 C -0.034 4.034 23 N -0.308 5.308 24 C -0.109 4.109 25 N -0.179 5.179 26 C -0.016 4.016 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.260 0.740 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.110 0.890 38 H 0.274 0.726 39 H 0.254 0.746 40 H 0.109 0.891 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.978 -26.758 4.317 28.254 hybrid contribution 1.799 1.417 -0.171 2.296 sum 9.777 -25.341 4.147 27.476 Atomic orbital electron populations 1.70183 1.07944 1.28479 1.48189 1.26090 0.95917 1.03259 0.93850 0.84936 0.78704 0.76548 0.77958 1.17954 1.20135 1.20096 1.23249 0.95397 0.92052 1.58542 0.89790 1.85585 1.10638 0.99275 1.97056 1.23390 1.03540 0.94203 1.07125 1.20046 0.86192 0.86595 0.74470 1.90714 1.17439 1.85975 1.49683 1.45557 1.10493 1.03865 1.75505 1.22923 0.99628 0.79884 0.96935 1.23975 1.02248 0.81147 0.95711 1.49756 1.63085 1.03963 1.21073 1.20220 0.77382 0.80053 0.88581 1.90733 1.49952 1.57277 1.47490 1.21718 1.04795 0.95733 0.95425 1.21598 1.02599 0.92663 0.80477 1.50665 1.28328 1.32308 1.06192 1.26929 0.89770 0.90190 0.96479 1.70586 1.27928 1.28635 1.03606 1.26562 0.90697 0.91364 1.02309 1.77980 1.25319 1.25859 0.88734 1.23614 0.99961 0.85700 0.92275 0.92066 0.86818 0.87003 0.73954 0.87426 0.86842 0.88740 0.87382 0.87234 0.85043 0.88957 0.72616 0.74557 0.89133 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.67 13.22 21.65 0.29 -54.39 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 42.36 29.55 68.60 2.03 44.38 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -29.86 9.50 67.95 0.65 -29.21 16 8 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 9 S -0.15 -8.02 20.57 -56.49 -1.16 -9.18 16 10 C -0.13 -4.59 6.16 71.24 0.44 -4.15 16 11 C 0.54 16.80 7.85 87.66 0.69 17.49 16 12 O -0.56 -22.98 15.48 -3.03 -0.05 -23.03 16 13 N -0.70 -12.73 5.37 -447.39 -2.40 -15.13 16 14 C 0.11 1.81 4.40 46.75 0.21 2.02 16 15 C 0.09 1.15 8.43 86.44 0.73 1.88 16 16 N -0.64 -9.13 3.61 -836.57 -3.02 -12.16 16 17 C 0.55 8.83 8.06 87.66 0.71 9.53 16 18 O -0.57 -12.94 16.71 -3.02 -0.05 -12.99 16 19 C -0.14 -1.53 5.66 29.85 0.17 -1.36 16 20 C 0.15 1.53 5.84 86.38 0.50 2.03 16 21 N -0.38 -5.13 3.69 -352.06 -1.30 -6.43 16 22 C 0.26 3.00 12.63 180.36 2.28 5.28 16 23 N -0.58 -9.76 11.19 -204.01 -2.28 -12.04 16 24 C 0.19 3.06 13.03 180.77 2.36 5.42 16 25 N -0.35 -6.22 12.57 -61.25 -0.77 -6.99 16 26 C 0.11 1.33 8.59 86.49 0.74 2.07 16 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 29 H 0.11 3.48 8.14 -2.40 -0.02 3.46 16 30 H 0.42 4.58 8.71 -92.70 -0.81 3.78 16 31 H 0.11 2.29 7.50 -2.39 -0.02 2.27 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.13 0.83 8.04 -2.39 -0.02 0.81 16 37 H 0.09 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.26 0.42 8.06 -2.91 -0.02 0.39 16 39 H 0.24 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.12 0.92 8.11 -2.39 -0.02 0.90 16 Total: -1.00 -85.56 378.62 1.46 -84.09 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.26 Total: 11.65 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 9.93 Total: 12.21 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -9.49 Total: -107.13 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.10 Total: -36.02 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -85.56 1.46 -84.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745818928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.683 kcal (2) G-P(sol) polarization free energy of solvation -85.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds