Wall clock time and date at job start Tue Mar 31 2020 22:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36599 * 126.57624 * 2 1 4 4 C 1.47519 * 125.77101 * 359.95811 * 3 2 1 5 5 O 1.21597 * 120.00371 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00110 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00099 * 179.97438 * 6 4 3 8 8 C 1.53501 * 114.20671 * 155.00122 * 7 6 4 9 9 N 1.47065 * 87.98741 * 87.71545 * 8 7 6 10 10 C 1.34775 * 136.05752 * 207.08848 * 9 8 7 11 11 O 1.21276 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00022 * 180.02562 * 10 9 8 13 13 S 1.80998 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31626 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47210 * 89.99890 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00121 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00210 * 18 16 14 22 22 C 1.47067 * 87.88381 * 27.34024 * 9 8 7 23 23 N 1.34401 * 108.45512 * 180.22023 * 3 2 1 24 24 N 1.28758 * 109.52695 * 359.58702 * 23 3 2 25 25 N 1.34808 * 126.58198 * 179.97438 * 2 1 3 26 26 C 1.46497 * 126.59888 * 0.05561 * 25 2 1 27 27 H 1.09001 * 109.47423 * 90.00292 * 1 2 3 28 28 H 1.09007 * 109.46727 * 210.00173 * 1 2 3 29 29 H 1.08999 * 109.47616 * 329.99882 * 1 2 3 30 30 H 0.97002 * 119.99788 * 359.97438 * 6 4 3 31 31 H 1.09000 * 113.28654 * 21.92894 * 7 6 4 32 32 H 1.09001 * 113.46643 * 332.93246 * 8 7 6 33 33 H 1.08996 * 113.46488 * 202.49706 * 8 7 6 34 34 H 1.09001 * 109.47434 * 59.99478 * 12 10 9 35 35 H 1.08999 * 109.47072 * 299.99957 * 12 10 9 36 36 H 0.97004 * 120.00604 * 179.97438 * 17 16 14 37 37 H 1.09010 * 113.46411 * 87.43777 * 22 9 8 38 38 H 1.08997 * 113.47100 * 217.87349 * 22 9 8 39 39 H 1.08997 * 109.47540 * 89.99765 * 26 25 2 40 40 H 1.08999 * 109.47803 * 210.00308 * 26 25 2 41 41 H 1.09003 * 109.46568 * 330.00071 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3209 1.0970 0.0000 4 6 1.8736 2.5027 -0.0009 5 8 0.6858 2.7628 -0.0022 6 7 2.7815 3.4988 -0.0013 7 6 2.3372 4.8948 -0.0027 8 6 3.3552 5.8799 0.5886 9 7 3.9500 5.9895 -0.7520 10 6 5.1683 6.2746 -1.2528 11 8 6.0894 6.5212 -0.5034 12 6 5.3857 6.2883 -2.7439 13 16 7.1117 6.7025 -3.0982 14 6 7.0842 6.6480 -4.8591 15 1 6.1675 6.4092 -5.3778 16 6 8.2391 6.9180 -5.5799 17 7 9.3552 7.2143 -4.9481 18 14 8.2102 6.8595 -7.4468 19 1 7.8619 8.2015 -7.9788 20 1 9.5488 6.4596 -7.9504 21 1 7.1969 5.8710 -7.8954 22 6 2.6287 5.6572 -1.3058 23 7 3.5983 0.6790 -0.0049 24 7 3.6299 -0.6082 0.0008 25 7 2.3104 -1.0825 0.0005 26 6 1.8865 -2.4848 0.0000 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 3.7291 3.2914 -0.0007 31 1 1.3213 5.0241 0.3706 32 1 4.0211 5.4271 1.3232 33 1 2.9063 6.8083 0.9415 34 1 4.7328 7.0327 -3.1996 35 1 5.1563 5.3045 -3.1535 36 1 10.1625 7.4027 -5.4518 37 1 1.9882 6.5271 -1.4522 38 1 2.6755 5.0148 -2.1851 39 1 1.7821 -2.8325 -1.0278 40 1 2.6328 -3.0903 0.5143 41 1 0.9290 -2.5751 0.5131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745840077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:57 Heat of formation + Delta-G solvation = 70.794550 kcal Electronic energy + Delta-G solvation = -25971.814118 eV Core-core repulsion = 22017.186742 eV Total energy + Delta-G solvation = -3954.627376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.61845 -40.70494 -39.09004 -37.46109 -35.38721 -33.78535 -32.71628 -32.40847 -30.42451 -28.76466 -27.91262 -27.56836 -26.06206 -25.42559 -24.11558 -22.12852 -21.17435 -20.78721 -19.00835 -18.45013 -17.67664 -16.84291 -16.67634 -16.53693 -16.23164 -15.51047 -15.31615 -14.93436 -14.78217 -14.61180 -14.51534 -13.94688 -13.84437 -13.76150 -13.54376 -13.48156 -12.99038 -12.95557 -12.82122 -12.57154 -12.27710 -12.06992 -11.86295 -11.50921 -11.19142 -11.04045 -10.99073 -10.74254 -10.61632 -10.40440 -9.80239 -9.59349 -9.42612 -9.23354 -9.04607 -8.63201 -8.21714 -6.48016 -6.19428 -3.90008 0.74446 1.38275 1.62755 2.74901 2.77262 2.95628 3.08749 3.24085 3.26541 3.31797 3.58899 3.80327 3.91900 4.11461 4.14464 4.22337 4.32976 4.44340 4.59298 4.69283 4.86340 4.93587 4.99784 5.04451 5.15737 5.24089 5.27878 5.32015 5.41951 5.42956 5.49371 5.59572 5.63228 5.91610 5.98266 5.99465 6.17462 6.22031 7.15702 7.61794 7.62369 7.84437 7.87964 8.37492 8.55224 9.25746 10.88036 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.002455 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.034513 B =11403.303850 C =12656.584448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.125 3.875 3 C -0.110 4.110 4 C 0.615 3.385 5 O -0.537 6.537 6 N -0.693 5.693 7 C 0.107 3.893 8 C 0.097 3.903 9 N -0.654 5.654 10 C 0.563 3.437 11 O -0.513 6.513 12 C -0.144 4.144 13 S -0.060 6.060 14 C -0.534 4.534 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.087 3.913 23 N -0.197 5.197 24 N -0.062 5.062 25 N -0.366 5.366 26 C 0.086 3.914 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.415 0.585 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.852 -17.155 12.027 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.013 4.013 3 C -0.250 4.250 4 C 0.400 3.600 5 O -0.413 6.413 6 N -0.343 5.343 7 C 0.001 3.999 8 C -0.027 4.027 9 N -0.394 5.394 10 C 0.353 3.647 11 O -0.386 6.386 12 C -0.295 4.295 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.038 4.038 23 N -0.071 5.071 24 N -0.042 5.042 25 N -0.151 5.151 26 C -0.055 4.055 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.252 0.748 31 H 0.146 0.854 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.389 -16.948 13.027 30.240 hybrid contribution -1.481 -0.357 -2.220 2.692 sum -22.870 -17.305 10.808 30.648 Atomic orbital electron populations 1.20736 0.84525 1.05396 1.04783 1.21919 0.96247 0.86337 0.96792 1.21097 0.89189 0.95186 1.19510 1.16641 0.85344 0.82454 0.75523 1.90760 1.15746 1.83624 1.51206 1.45330 1.10735 1.04449 1.73761 1.22290 0.99780 0.80475 0.97402 1.23275 0.93276 0.98159 0.87975 1.49769 1.08071 1.72490 1.09068 1.19940 0.79744 0.74732 0.90323 1.90721 1.40363 1.47019 1.60508 1.23467 1.07806 1.05049 0.93161 1.85393 1.00058 1.90888 1.06955 1.22851 0.99096 1.55206 0.91102 0.90960 1.24991 0.94556 0.94540 0.99504 1.70017 1.00315 1.43935 1.36008 0.86164 0.77653 0.78515 0.83145 1.20270 1.20736 1.19698 1.23550 0.83355 0.98602 0.98262 1.74665 1.18864 1.04265 1.09297 1.82081 0.95759 1.03319 1.23025 1.50334 1.06532 1.07861 1.50382 1.22192 1.02452 0.75955 1.04880 0.88858 0.90641 0.86910 0.74844 0.85401 0.89848 0.88391 0.89333 0.89348 0.92182 0.88478 0.89916 0.89094 0.87931 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 9.57 36.00 0.34 -0.14 16 2 C 0.13 1.07 7.02 -81.88 -0.57 0.50 16 3 C -0.11 -1.26 6.99 -83.55 -0.58 -1.84 16 4 C 0.62 6.99 7.82 -12.48 -0.10 6.89 16 5 O -0.54 -6.42 14.31 5.28 0.08 -6.35 16 6 N -0.69 -7.52 5.40 -54.53 -0.29 -7.82 16 7 C 0.11 0.99 4.61 -67.67 -0.31 0.68 16 8 C 0.10 1.02 8.38 -8.51 -0.07 0.95 16 9 N -0.65 -9.35 3.69 -185.08 -0.68 -10.03 16 10 C 0.56 11.14 8.10 -10.99 -0.09 11.05 16 11 O -0.51 -12.20 16.64 5.56 0.09 -12.11 16 12 C -0.14 -3.07 5.98 36.00 0.22 -2.86 16 13 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 14 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 17 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 18 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 C 0.09 0.90 8.26 -8.38 -0.07 0.83 16 23 N -0.20 -2.61 12.04 32.85 0.40 -2.21 16 24 N -0.06 -0.75 13.78 60.35 0.83 0.08 16 25 N -0.37 -2.98 4.03 -63.59 -0.26 -3.24 16 26 C 0.09 0.24 11.33 59.85 0.68 0.91 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.16 7.18 -51.93 -0.37 -0.21 16 29 H 0.11 0.72 6.43 -51.93 -0.33 0.39 16 30 H 0.42 4.95 8.45 -40.82 -0.34 4.61 16 31 H 0.13 0.99 7.45 -51.93 -0.39 0.61 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 35 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 36 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.01 7.16 -51.93 -0.37 -0.37 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -39.24 373.66 -6.23 -45.47 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.16 Total: -0.24 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.36 Total: 3.77 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.73 Total: -49.05 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.24 -6.23 -45.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745840077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.260 kcal (2) G-P(sol) polarization free energy of solvation -39.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds