Wall clock time and date at job start Tue Mar 31 2020 22:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36599 * 126.57624 * 2 1 4 4 C 1.47519 * 125.77101 * 359.95811 * 3 2 1 5 5 O 1.21597 * 120.00371 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00110 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00099 * 179.97438 * 6 4 3 8 8 C 1.53501 * 114.20671 * 155.00122 * 7 6 4 9 9 N 1.47065 * 87.98741 * 87.71545 * 8 7 6 10 10 C 1.34775 * 136.05752 * 207.08848 * 9 8 7 11 11 O 1.21276 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00022 * 180.02562 * 10 9 8 13 13 S 1.80998 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31626 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47210 * 89.99890 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00121 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00210 * 18 16 14 22 22 C 1.47067 * 87.88381 * 27.34024 * 9 8 7 23 23 N 1.34401 * 108.45512 * 180.22023 * 3 2 1 24 24 N 1.28758 * 109.52695 * 359.58702 * 23 3 2 25 25 N 1.34808 * 126.58198 * 179.97438 * 2 1 3 26 26 C 1.46497 * 126.59888 * 0.05561 * 25 2 1 27 27 H 1.09001 * 109.47423 * 90.00292 * 1 2 3 28 28 H 1.09007 * 109.46727 * 210.00173 * 1 2 3 29 29 H 1.08999 * 109.47616 * 329.99882 * 1 2 3 30 30 H 0.97002 * 119.99788 * 359.97438 * 6 4 3 31 31 H 1.09000 * 113.28654 * 21.92894 * 7 6 4 32 32 H 1.09001 * 113.46643 * 332.93246 * 8 7 6 33 33 H 1.08996 * 113.46488 * 202.49706 * 8 7 6 34 34 H 1.09001 * 109.47434 * 59.99478 * 12 10 9 35 35 H 1.08999 * 109.47072 * 299.99957 * 12 10 9 36 36 H 0.97004 * 120.00604 * 179.97438 * 17 16 14 37 37 H 1.09010 * 113.46411 * 87.43777 * 22 9 8 38 38 H 1.08997 * 113.47100 * 217.87349 * 22 9 8 39 39 H 1.08997 * 109.47540 * 89.99765 * 26 25 2 40 40 H 1.08999 * 109.47803 * 210.00308 * 26 25 2 41 41 H 1.09003 * 109.46568 * 330.00071 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3209 1.0970 0.0000 4 6 1.8736 2.5027 -0.0009 5 8 0.6858 2.7628 -0.0022 6 7 2.7815 3.4988 -0.0013 7 6 2.3372 4.8948 -0.0027 8 6 3.3552 5.8799 0.5886 9 7 3.9500 5.9895 -0.7520 10 6 5.1683 6.2746 -1.2528 11 8 6.0894 6.5212 -0.5034 12 6 5.3857 6.2883 -2.7439 13 16 7.1117 6.7025 -3.0982 14 6 7.0842 6.6480 -4.8591 15 1 6.1675 6.4092 -5.3778 16 6 8.2391 6.9180 -5.5799 17 7 9.3552 7.2143 -4.9481 18 14 8.2102 6.8595 -7.4468 19 1 7.8619 8.2015 -7.9788 20 1 9.5488 6.4596 -7.9504 21 1 7.1969 5.8710 -7.8954 22 6 2.6287 5.6572 -1.3058 23 7 3.5983 0.6790 -0.0049 24 7 3.6299 -0.6082 0.0008 25 7 2.3104 -1.0825 0.0005 26 6 1.8865 -2.4848 0.0000 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 3.7291 3.2914 -0.0007 31 1 1.3213 5.0241 0.3706 32 1 4.0211 5.4271 1.3232 33 1 2.9063 6.8083 0.9415 34 1 4.7328 7.0327 -3.1996 35 1 5.1563 5.3045 -3.1535 36 1 10.1625 7.4027 -5.4518 37 1 1.9882 6.5271 -1.4522 38 1 2.6755 5.0148 -2.1851 39 1 1.7821 -2.8325 -1.0278 40 1 2.6328 -3.0903 0.5143 41 1 0.9290 -2.5751 0.5131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745840077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:56 Heat of formation + Delta-G solvation = 39.133658 kcal Electronic energy + Delta-G solvation = -25973.187037 eV Core-core repulsion = 22017.186742 eV Total energy + Delta-G solvation = -3956.000295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.33754 -41.72450 -40.14427 -38.79142 -36.01523 -34.69749 -34.61048 -33.32684 -31.88806 -29.62564 -28.63995 -28.33953 -27.67735 -26.93090 -24.96437 -22.99302 -21.95831 -21.58105 -20.36487 -19.51923 -19.18380 -18.04609 -17.52879 -17.40456 -16.95590 -16.91417 -16.82830 -16.56694 -15.94255 -15.65717 -15.42488 -15.27638 -14.77396 -14.57654 -14.29500 -14.20457 -14.10067 -13.95340 -13.64813 -13.49227 -13.24460 -13.20807 -13.04748 -12.97292 -12.90662 -12.61219 -12.20473 -12.09204 -11.76239 -11.27449 -11.16594 -11.16026 -10.96217 -10.37561 -10.32543 -10.08743 -9.81173 -8.70859 -8.36973 -6.16063 0.09388 0.53188 1.12114 1.18909 1.40713 1.40905 1.52598 1.55427 1.94464 1.99897 2.12495 2.24925 2.96883 3.13028 3.16224 3.31806 3.41563 3.60286 3.60708 3.73196 3.91154 4.15779 4.28426 4.30863 4.37506 4.41983 4.49093 4.57836 4.60616 4.64778 4.67174 4.68676 4.74319 4.86305 4.88464 5.09155 5.37907 5.38664 5.52137 6.17155 6.26456 6.56463 6.82536 7.03333 7.03735 7.08099 8.72453 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.002455 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.034513 B =11403.303850 C =12656.584448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.136 3.864 3 C -0.139 4.139 4 C 0.617 3.383 5 O -0.544 6.544 6 N -0.698 5.698 7 C 0.121 3.879 8 C 0.097 3.903 9 N -0.653 5.653 10 C 0.561 3.439 11 O -0.567 6.567 12 C -0.118 4.118 13 S -0.149 6.149 14 C -0.547 4.547 15 H 0.081 0.919 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 1.001 2.999 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.259 1.259 22 C 0.086 3.914 23 N -0.232 5.232 24 N -0.100 5.100 25 N -0.354 5.354 26 C 0.071 3.929 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.408 0.592 31 H 0.157 0.843 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.272 0.728 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.708 -18.375 11.260 35.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.004 4.004 3 C -0.280 4.280 4 C 0.403 3.597 5 O -0.421 6.421 6 N -0.347 5.347 7 C 0.015 3.985 8 C -0.026 4.026 9 N -0.390 5.390 10 C 0.350 3.650 11 O -0.445 6.445 12 C -0.269 4.269 13 S 0.079 5.921 14 C -0.695 4.695 15 H 0.099 0.901 16 C -0.192 4.192 17 N -0.547 5.547 18 Si 0.822 3.178 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.037 4.037 23 N -0.105 5.105 24 N -0.080 5.080 25 N -0.140 5.140 26 C -0.067 4.067 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.243 0.757 31 H 0.174 0.826 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.314 -18.212 12.278 33.515 hybrid contribution -0.488 -0.108 -1.870 1.936 sum -25.803 -18.320 10.408 33.313 Atomic orbital electron populations 1.20877 0.81674 1.06627 1.05819 1.22463 0.97635 0.85559 0.94776 1.21385 0.89358 0.96080 1.21147 1.16668 0.85235 0.82598 0.75198 1.90744 1.15741 1.83810 1.51786 1.45457 1.10346 1.05202 1.73704 1.22330 1.00423 0.79284 0.96428 1.23634 0.92907 1.00056 0.85982 1.49715 1.07695 1.69792 1.11817 1.19550 0.81106 0.75067 0.89250 1.90693 1.42617 1.50062 1.61167 1.23251 1.02727 1.05789 0.95177 1.85556 1.06961 1.91551 1.08064 1.23170 0.99775 1.55425 0.91092 0.90126 1.26156 0.93880 0.93651 1.05488 1.70182 1.01201 1.44917 1.38397 0.84931 0.78088 0.79174 0.75630 1.19045 1.20139 1.18334 1.23949 0.81183 1.00056 0.98535 1.74620 1.20316 1.05045 1.10477 1.81961 0.98173 1.03127 1.24706 1.50675 1.05248 1.09586 1.48470 1.22727 1.04227 0.73184 1.06587 0.87646 0.86999 0.88043 0.75739 0.82607 0.90847 0.85036 0.87594 0.88349 0.91902 0.84877 0.90354 0.87480 0.87366 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 9.57 71.23 0.68 0.04 16 2 C 0.14 2.11 7.02 41.72 0.29 2.40 16 3 C -0.14 -3.14 6.99 40.82 0.29 -2.85 16 4 C 0.62 13.47 7.82 86.69 0.68 14.15 16 5 O -0.54 -11.96 14.31 -4.02 -0.06 -12.02 16 6 N -0.70 -14.65 5.40 -444.69 -2.40 -17.05 16 7 C 0.12 1.96 4.61 45.55 0.21 2.17 16 8 C 0.10 1.85 8.38 83.18 0.70 2.54 16 9 N -0.65 -17.91 3.69 -857.85 -3.16 -21.07 16 10 C 0.56 22.52 8.10 87.66 0.71 23.23 16 11 O -0.57 -28.13 16.64 -3.02 -0.05 -28.18 16 12 C -0.12 -5.09 5.98 71.24 0.43 -4.66 16 13 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 14 C -0.55 -32.30 9.50 67.95 0.65 -31.65 16 15 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 16 C 0.01 0.76 5.49 84.86 0.47 1.23 16 17 N -0.91 -57.20 13.22 21.65 0.29 -56.92 16 18 Si 1.00 44.66 29.55 68.60 2.03 46.69 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 C 0.09 1.54 8.26 83.26 0.69 2.23 16 23 N -0.23 -6.35 12.04 -50.00 -0.60 -6.95 16 24 N -0.10 -2.47 13.78 37.02 0.51 -1.96 16 25 N -0.35 -5.29 4.03 -355.11 -1.43 -6.73 16 26 C 0.07 0.20 11.33 127.77 1.45 1.65 16 27 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 -0.04 7.18 -2.38 -0.02 -0.06 16 29 H 0.10 1.04 6.43 -2.39 -0.02 1.02 16 30 H 0.41 9.96 8.45 -92.71 -0.78 9.18 16 31 H 0.16 1.82 7.45 -2.39 -0.02 1.80 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 35 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.13 -0.55 7.16 -2.39 -0.02 -0.56 16 Total: -1.00 -91.05 373.66 1.48 -89.56 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.30 Total: 13.93 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.23 Total: 10.47 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -6.80 Total: -110.67 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.11 Total: -40.20 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -91.05 1.48 -89.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745840077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.695 kcal (2) G-P(sol) polarization free energy of solvation -91.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds