Wall clock time and date at job start Tue Mar 31 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33320 * 126.81358 * 2 1 4 4 N 1.28504 * 109.43926 * 179.97438 * 3 2 1 5 5 N 1.28717 * 110.63901 * 359.71151 * 4 3 2 6 6 H 0.97004 * 126.03777 * 180.29642 * 5 4 3 7 7 C 1.37003 * 126.81160 * 179.97438 * 2 1 3 8 8 C 1.47238 * 127.19008 * 0.02562 * 7 2 1 9 9 O 1.21612 * 119.99914 * 359.97438 * 8 7 2 10 10 N 1.34774 * 119.99557 * 180.02562 * 8 7 2 11 11 C 1.46500 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47197 * 179.97438 * 11 10 8 13 13 C 1.53495 * 114.20732 * 174.99478 * 12 11 10 14 14 N 1.47065 * 87.98362 * 139.85553 * 13 12 11 15 15 C 1.34775 * 136.05752 * 152.84847 * 14 13 12 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31634 * 120.00298 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47644 * 89.99884 * 23 21 19 25 25 H 1.48506 * 109.47143 * 209.99830 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99545 * 23 21 19 27 27 C 1.47067 * 87.88381 * 333.10023 * 14 13 12 28 28 H 1.09005 * 109.46994 * 270.02609 * 1 2 3 29 29 H 1.08997 * 109.46810 * 30.02352 * 1 2 3 30 30 H 1.08997 * 109.46903 * 150.02414 * 1 2 3 31 31 H 0.96998 * 120.00401 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47780 * 59.99589 * 11 10 8 33 33 H 1.09004 * 109.47249 * 299.99421 * 11 10 8 34 34 H 1.09004 * 113.27740 * 41.93646 * 12 11 10 35 35 H 1.09007 * 113.46442 * 25.07681 * 13 12 11 36 36 H 1.08997 * 113.52442 * 254.64770 * 13 12 11 37 37 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 38 38 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 39 39 H 0.96995 * 120.00138 * 180.02562 * 22 21 19 40 40 H 1.09000 * 113.46609 * 141.67771 * 27 14 13 41 41 H 1.08993 * 113.47087 * 272.11805 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0673 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6015 0.0070 6 1 4.4213 -1.1265 0.0128 7 6 2.3280 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0006 9 8 0.7422 -2.8064 0.0007 10 7 2.8585 -3.4816 0.0016 11 6 2.4548 -4.8899 0.0012 12 6 3.7009 -5.7777 0.0019 13 6 3.4041 -7.2788 0.1236 14 7 4.4677 -7.5162 -0.8639 15 6 5.3156 -8.5229 -1.1539 16 8 5.2885 -9.5453 -0.5021 17 6 6.2982 -8.3776 -2.2872 18 16 7.2894 -9.8860 -2.4234 19 6 8.3205 -9.4526 -3.7849 20 1 8.2132 -8.4877 -4.2579 21 6 9.2748 -10.3489 -4.2456 22 7 10.0448 -10.0254 -5.2630 23 14 9.4657 -12.0150 -3.4226 24 1 8.5778 -13.0011 -4.0891 25 1 10.8767 -12.4640 -3.5352 26 1 9.0944 -11.9044 -1.9890 27 6 4.2031 -6.1693 -1.3918 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 3.7997 -3.2469 0.0019 32 1 1.8616 -5.0976 -0.8894 33 1 1.8598 -5.0976 0.8906 34 1 4.4835 -5.4211 0.6717 35 1 2.4116 -7.5553 -0.2323 36 1 3.6274 -7.6879 1.1089 37 1 6.9538 -7.5287 -2.0932 38 1 5.7566 -8.2130 -3.2187 39 1 10.7115 -10.6520 -5.5852 40 1 5.1050 -5.6359 -1.6922 41 1 3.4258 -6.1472 -2.1554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746013160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:20 Heat of formation + Delta-G solvation = 61.632478 kcal Electronic energy + Delta-G solvation = -25290.026709 eV Core-core repulsion = 21335.002036 eV Total energy + Delta-G solvation = -3955.024673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.94039 -40.86269 -39.91395 -37.92992 -35.60789 -34.38035 -33.00284 -32.51065 -31.31475 -29.46288 -28.31407 -26.47906 -26.16497 -25.62698 -24.54668 -22.64833 -21.70456 -21.11689 -19.54206 -19.27015 -17.82863 -17.40686 -17.10490 -16.90920 -16.69996 -16.05386 -15.79618 -15.42644 -15.00743 -14.90279 -14.41234 -14.31010 -13.95497 -13.74018 -13.53369 -13.25517 -13.16474 -13.00848 -12.87750 -12.51585 -12.41038 -12.21271 -11.87958 -11.71396 -11.33534 -11.14608 -11.12355 -11.06807 -10.74633 -10.69690 -10.00842 -9.92750 -9.73438 -9.64801 -9.07318 -8.86726 -8.59313 -7.01037 -6.35771 -4.08701 0.27863 1.71465 1.82126 2.22896 2.42931 2.45051 2.78989 3.01245 3.27779 3.44541 3.49093 3.63763 3.72950 3.94574 4.15375 4.25162 4.27915 4.33423 4.47185 4.53460 4.63882 4.93172 5.03082 5.03633 5.06816 5.11127 5.14497 5.16597 5.22397 5.34734 5.40582 5.49324 5.62388 5.71071 5.75441 5.79027 5.89533 5.97436 6.59240 7.32165 7.58909 7.70365 7.87049 8.27012 8.33983 9.10088 10.73315 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.001811 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.002649 B =15460.674454 C =16449.971844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.065 3.935 3 N -0.269 5.269 4 N -0.039 5.039 5 N -0.375 5.375 6 H 0.451 0.549 7 C -0.077 4.077 8 C 0.598 3.402 9 O -0.508 6.508 10 N -0.724 5.724 11 C 0.133 3.867 12 C -0.145 4.145 13 C 0.118 3.882 14 N -0.653 5.653 15 C 0.562 3.438 16 O -0.513 6.513 17 C -0.116 4.116 18 S -0.141 6.141 19 C -0.523 4.523 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.273 1.273 26 H -0.235 1.235 27 C 0.104 3.896 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.398 0.602 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.271 0.729 40 H 0.082 0.918 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.607 18.977 12.169 28.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 N -0.136 5.136 4 N -0.021 5.021 5 N -0.102 5.102 6 H 0.298 0.702 7 C -0.211 4.211 8 C 0.382 3.618 9 O -0.380 6.380 10 N -0.376 5.376 11 C 0.010 3.990 12 C -0.164 4.164 13 C -0.006 4.006 14 N -0.392 5.392 15 C 0.351 3.649 16 O -0.387 6.387 17 C -0.266 4.266 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.515 5.515 23 Si 0.681 3.319 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.159 1.159 27 C -0.019 4.019 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.232 0.768 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.525 18.313 12.940 28.459 hybrid contribution 1.026 -0.686 -0.765 1.453 sum -16.499 17.627 12.174 27.039 Atomic orbital electron populations 1.20359 0.84642 1.04644 1.03974 1.22407 0.98754 0.86895 0.99429 1.75006 0.95143 1.25925 1.17498 1.78246 1.16043 0.92132 1.15630 1.45497 1.08774 1.07089 1.48854 0.70190 1.22034 0.85118 0.96385 1.17523 1.16663 0.85943 0.82127 0.77068 1.90868 1.16378 1.81846 1.48958 1.45856 1.09239 1.06777 1.75730 1.21375 0.95990 0.77722 1.03931 1.23260 0.98294 0.95683 0.99156 1.22793 0.92093 0.91082 0.94633 1.49519 1.36257 1.16794 1.36596 1.19912 0.79851 0.80809 0.84292 1.90725 1.69693 1.27190 1.51072 1.23210 0.99497 1.05352 0.98546 1.84823 1.42570 1.18725 1.45323 1.22283 1.21488 1.06706 1.16540 0.89386 1.24713 0.93999 0.98466 0.94095 1.69932 1.20780 1.36608 1.24190 0.86736 0.78459 0.83971 0.82701 1.19148 1.19843 1.15938 1.23054 1.01100 0.82145 0.95630 0.89766 0.90078 0.88656 0.76837 0.89904 0.89821 0.86934 0.89449 0.89884 0.88590 0.88567 0.91862 0.89999 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 9.93 36.01 0.36 -0.12 16 2 C 0.07 0.53 7.30 -82.39 -0.60 -0.07 16 3 N -0.27 -2.62 12.35 33.52 0.41 -2.21 16 4 N -0.04 -0.33 13.35 60.35 0.81 0.48 16 5 N -0.37 -1.86 6.97 33.31 0.23 -1.62 16 6 H 0.45 0.37 8.32 -190.32 -1.58 -1.22 16 7 C -0.08 -0.50 7.17 -82.33 -0.59 -1.09 16 8 C 0.60 3.82 7.81 -12.60 -0.10 3.72 16 9 O -0.51 -4.73 14.99 5.27 0.08 -4.65 16 10 N -0.72 -2.56 5.55 -61.44 -0.34 -2.90 16 11 C 0.13 0.52 5.60 -4.04 -0.02 0.50 16 12 C -0.14 -0.66 4.08 -90.24 -0.37 -1.03 16 13 C 0.12 0.93 8.20 -8.51 -0.07 0.86 16 14 N -0.65 -7.65 3.69 -185.41 -0.68 -8.34 16 15 C 0.56 9.73 8.10 -10.99 -0.09 9.64 16 16 O -0.51 -10.97 16.64 5.56 0.09 -10.88 16 17 C -0.12 -2.17 5.98 36.00 0.22 -1.95 16 18 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 19 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.06 13.97 55.49 0.78 -25.28 16 23 Si 0.86 21.40 27.74 -169.99 -4.72 16.69 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 27 C 0.10 0.71 7.99 -8.65 -0.07 0.65 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.63 6.61 -51.93 -0.34 0.28 16 31 H 0.40 0.35 7.74 -40.82 -0.32 0.03 16 32 H 0.08 0.37 7.83 -51.93 -0.41 -0.04 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.52 7.89 -51.93 -0.41 0.11 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -38.36 370.39 -7.31 -45.68 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -6.44 Total: -6.39 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.12 Total: -0.67 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 1.20 Total: -39.87 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.17 Total: -15.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.72 Total: 16.69 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.36 -7.31 -45.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746013160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.308 kcal (2) G-P(sol) polarization free energy of solvation -38.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds