Wall clock time and date at job start Tue Mar 31 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33320 * 126.81358 * 2 1 4 4 N 1.28504 * 109.43926 * 179.97438 * 3 2 1 5 5 N 1.28717 * 110.63901 * 359.71151 * 4 3 2 6 6 H 0.97004 * 126.03777 * 180.29642 * 5 4 3 7 7 C 1.37003 * 126.81160 * 179.97438 * 2 1 3 8 8 C 1.47238 * 127.19008 * 0.02562 * 7 2 1 9 9 O 1.21612 * 119.99914 * 359.97438 * 8 7 2 10 10 N 1.34774 * 119.99557 * 180.02562 * 8 7 2 11 11 C 1.46500 * 119.99653 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47197 * 179.97438 * 11 10 8 13 13 C 1.53495 * 114.20732 * 174.99478 * 12 11 10 14 14 N 1.47065 * 87.98362 * 139.85553 * 13 12 11 15 15 C 1.34775 * 136.05752 * 152.84847 * 14 13 12 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31634 * 120.00298 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47644 * 89.99884 * 23 21 19 25 25 H 1.48506 * 109.47143 * 209.99830 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99545 * 23 21 19 27 27 C 1.47067 * 87.88381 * 333.10023 * 14 13 12 28 28 H 1.09005 * 109.46994 * 270.02609 * 1 2 3 29 29 H 1.08997 * 109.46810 * 30.02352 * 1 2 3 30 30 H 1.08997 * 109.46903 * 150.02414 * 1 2 3 31 31 H 0.96998 * 120.00401 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47780 * 59.99589 * 11 10 8 33 33 H 1.09004 * 109.47249 * 299.99421 * 11 10 8 34 34 H 1.09004 * 113.27740 * 41.93646 * 12 11 10 35 35 H 1.09007 * 113.46442 * 25.07681 * 13 12 11 36 36 H 1.08997 * 113.52442 * 254.64770 * 13 12 11 37 37 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 38 38 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 39 39 H 0.96995 * 120.00138 * 180.02562 * 22 21 19 40 40 H 1.09000 * 113.46609 * 141.67771 * 27 14 13 41 41 H 1.08993 * 113.47087 * 272.11805 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0673 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6015 0.0070 6 1 4.4213 -1.1265 0.0128 7 6 2.3280 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0006 9 8 0.7422 -2.8064 0.0007 10 7 2.8585 -3.4816 0.0016 11 6 2.4548 -4.8899 0.0012 12 6 3.7009 -5.7777 0.0019 13 6 3.4041 -7.2788 0.1236 14 7 4.4677 -7.5162 -0.8639 15 6 5.3156 -8.5229 -1.1539 16 8 5.2885 -9.5453 -0.5021 17 6 6.2982 -8.3776 -2.2872 18 16 7.2894 -9.8860 -2.4234 19 6 8.3205 -9.4526 -3.7849 20 1 8.2132 -8.4877 -4.2579 21 6 9.2748 -10.3489 -4.2456 22 7 10.0448 -10.0254 -5.2630 23 14 9.4657 -12.0150 -3.4226 24 1 8.5778 -13.0011 -4.0891 25 1 10.8767 -12.4640 -3.5352 26 1 9.0944 -11.9044 -1.9890 27 6 4.2031 -6.1693 -1.3918 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 3.7997 -3.2469 0.0019 32 1 1.8616 -5.0976 -0.8894 33 1 1.8598 -5.0976 0.8906 34 1 4.4835 -5.4211 0.6717 35 1 2.4116 -7.5553 -0.2323 36 1 3.6274 -7.6879 1.1089 37 1 6.9538 -7.5287 -2.0932 38 1 5.7566 -8.2130 -3.2187 39 1 10.7115 -10.6520 -5.5852 40 1 5.1050 -5.6359 -1.6922 41 1 3.4258 -6.1472 -2.1554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746013160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:20 Heat of formation + Delta-G solvation = 30.466519 kcal Electronic energy + Delta-G solvation = -25291.378166 eV Core-core repulsion = 21335.002036 eV Total energy + Delta-G solvation = -3956.376131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.47916 -41.61668 -40.54460 -39.07794 -36.13715 -34.91623 -34.69689 -33.55449 -32.36229 -30.46178 -28.92148 -27.90213 -27.10358 -26.80098 -25.11691 -23.21812 -22.22894 -21.71399 -20.50746 -19.91561 -19.56781 -18.12298 -17.89425 -17.61598 -17.28221 -17.17634 -16.87159 -16.71650 -16.26895 -15.75201 -15.73670 -15.00138 -14.90440 -14.79528 -14.50953 -14.20154 -13.99607 -13.71307 -13.66809 -13.49099 -13.39039 -13.11752 -13.03673 -12.96144 -12.68228 -12.42115 -12.26500 -11.88970 -11.73089 -11.66629 -11.30643 -11.19412 -11.00036 -10.57382 -10.51192 -10.14425 -9.81709 -9.03824 -8.53906 -6.25579 -0.23368 0.92232 1.12550 1.29829 1.39326 1.41840 1.47584 1.51504 1.82760 1.92912 1.97200 2.22763 2.64233 2.84370 3.12676 3.21780 3.46624 3.52060 3.72337 3.79730 3.95531 4.03612 4.13593 4.18265 4.38084 4.46950 4.56702 4.61408 4.62489 4.76177 4.78404 4.80172 4.85688 4.94938 5.10571 5.27548 5.33445 5.65697 5.68220 6.08670 6.25042 6.55034 6.90576 6.91209 7.02181 7.14446 8.58252 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.001811 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.002649 B =15460.674454 C =16449.971844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.047 3.953 3 N -0.300 5.300 4 N -0.058 5.058 5 N -0.349 5.349 6 H 0.469 0.531 7 C -0.070 4.070 8 C 0.603 3.397 9 O -0.538 6.538 10 N -0.707 5.707 11 C 0.138 3.862 12 C -0.111 4.111 13 C 0.108 3.892 14 N -0.654 5.654 15 C 0.561 3.439 16 O -0.567 6.567 17 C -0.100 4.100 18 S -0.177 6.177 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.237 1.237 27 C 0.096 3.904 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.413 0.587 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.277 0.723 40 H 0.095 0.905 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.425 19.550 13.181 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 N -0.166 5.166 4 N -0.040 5.040 5 N -0.080 5.080 6 H 0.320 0.680 7 C -0.205 4.205 8 C 0.386 3.614 9 O -0.413 6.413 10 N -0.360 5.360 11 C 0.015 3.985 12 C -0.130 4.130 13 C -0.014 4.014 14 N -0.390 5.390 15 C 0.350 3.650 16 O -0.445 6.445 17 C -0.251 4.251 18 S 0.049 5.951 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.025 4.025 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.250 0.750 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.318 18.950 13.950 29.821 hybrid contribution 1.168 -0.715 -1.070 1.738 sum -17.150 18.235 12.880 28.152 Atomic orbital electron populations 1.20371 0.83829 1.04693 1.04434 1.22770 0.99637 0.87142 0.99849 1.74974 0.95753 1.27078 1.18787 1.78173 1.15791 0.93402 1.16630 1.45458 1.09213 1.06359 1.46955 0.68006 1.22025 0.85303 0.96309 1.16873 1.16569 0.85762 0.82169 0.76852 1.90865 1.17717 1.82130 1.50569 1.45687 1.09737 1.06198 1.74345 1.21315 0.95418 0.77368 1.04389 1.23014 0.98717 0.93556 0.97690 1.23147 0.91560 0.93198 0.93508 1.49491 1.35306 1.16892 1.37269 1.19480 0.80618 0.81381 0.83554 1.90698 1.71544 1.29562 1.52738 1.23152 0.99486 1.02128 1.00326 1.84760 1.43344 1.23344 1.43637 1.22423 1.22060 1.05717 1.17389 0.91861 1.25552 0.93846 1.01853 0.94681 1.70008 1.21654 1.38104 1.25523 0.85882 0.79120 0.79888 0.81583 1.18764 1.18254 1.16093 1.23476 1.02389 0.79273 0.97395 0.89099 0.89503 0.89049 0.75005 0.89686 0.89355 0.85302 0.87768 0.90427 0.86998 0.87391 0.91324 0.88691 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 9.93 71.24 0.71 -0.17 16 2 C 0.05 0.72 7.30 42.05 0.31 1.03 16 3 N -0.30 -5.68 12.35 -47.88 -0.59 -6.27 16 4 N -0.06 -0.92 13.35 37.02 0.49 -0.42 16 5 N -0.35 -2.72 6.97 -48.52 -0.34 -3.06 16 6 H 0.47 -0.62 8.32 -219.89 -1.83 -2.45 16 7 C -0.07 -0.78 7.17 40.41 0.29 -0.49 16 8 C 0.60 6.11 7.81 86.61 0.68 6.79 16 9 O -0.54 -8.93 14.99 -4.07 -0.06 -8.99 16 10 N -0.71 -2.31 5.55 -466.56 -2.59 -4.90 16 11 C 0.14 0.53 5.60 86.38 0.48 1.01 16 12 C -0.11 -0.55 4.08 -10.55 -0.04 -0.59 16 13 C 0.11 1.37 8.20 83.17 0.68 2.05 16 14 N -0.65 -13.60 3.69 -858.91 -3.17 -16.77 16 15 C 0.56 18.71 8.10 87.66 0.71 19.42 16 16 O -0.57 -24.13 16.64 -3.02 -0.05 -24.18 16 17 C -0.10 -3.65 5.98 71.24 0.43 -3.22 16 18 S -0.18 -8.81 18.55 -56.49 -1.05 -9.86 16 19 C -0.53 -30.15 10.04 67.95 0.68 -29.47 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 21 C 0.05 2.67 5.50 84.86 0.47 3.14 16 22 N -0.92 -54.78 13.97 21.65 0.30 -54.47 16 23 Si 0.91 44.28 27.74 68.60 1.90 46.19 16 24 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.24 -11.48 6.74 99.48 0.67 -10.81 16 27 C 0.10 0.94 7.99 83.09 0.66 1.60 16 28 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.14 6.61 -2.39 -0.02 1.13 16 31 H 0.41 -1.10 7.74 -92.71 -0.72 -1.82 16 32 H 0.08 0.40 7.83 -2.39 -0.02 0.38 16 33 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.10 1.03 8.11 -2.38 -0.02 1.01 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 38 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 39 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.11 0.78 7.89 -2.39 -0.02 0.76 16 Total: -1.00 -85.71 370.39 -0.58 -86.29 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: -1.48 Total: -4.66 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 6.05 Total: 1.10 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -5.89 Total: -85.89 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.11 Total: -33.17 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.19 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -85.71 -0.58 -86.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746013160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.761 kcal (2) G-P(sol) polarization free energy of solvation -85.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds