Wall clock time and date at job start Tue Mar 31 2020 22:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31239 * 124.05558 * 2 1 4 4 N 1.27336 * 120.03852 * 180.34300 * 3 2 1 5 5 S 1.56635 * 109.74164 * 359.70947 * 4 3 2 6 6 C 1.38248 * 124.05754 * 179.82703 * 2 1 3 7 7 C 1.47171 * 128.47483 * 0.02562 * 6 2 1 8 8 O 1.21624 * 119.99910 * 359.70132 * 7 6 2 9 9 N 1.34776 * 119.99773 * 179.70173 * 7 6 2 10 10 C 1.47020 * 125.65281 * 359.95853 * 9 7 6 11 11 C 1.54316 * 107.27568 * 178.97789 * 10 9 7 12 12 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 13 13 H 1.08998 * 111.00511 * 277.42784 * 12 11 10 14 14 N 1.46902 * 111.00765 * 153.57597 * 12 11 10 15 15 C 1.46900 * 111.00366 * 161.35007 * 14 12 11 16 16 C 1.50693 * 109.47377 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99905 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00337 * 179.97438 * 16 15 14 19 19 C 1.37090 * 120.00252 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99989 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00193 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00235 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47255 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47510 * 119.99771 * 23 21 19 26 26 H 1.48504 * 109.47334 * 240.00145 * 23 21 19 27 27 C 1.47422 * 125.64527 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.46986 * 270.17127 * 1 2 3 29 29 H 1.08993 * 109.47207 * 30.17228 * 1 2 3 30 30 H 1.09001 * 109.46849 * 150.17298 * 1 2 3 31 31 H 1.09000 * 109.88493 * 59.55540 * 10 9 7 32 32 H 1.09003 * 109.87996 * 298.39630 * 10 9 7 33 33 H 1.09003 * 110.72312 * 219.44382 * 11 10 9 34 34 H 1.09003 * 110.72351 * 96.16743 * 11 10 9 35 35 H 1.00895 * 110.99890 * 37.39549 * 14 12 11 36 36 H 1.09003 * 109.46872 * 300.00565 * 15 14 12 37 37 H 1.09003 * 109.46695 * 60.00042 * 15 14 12 38 38 H 0.96998 * 119.99941 * 0.02562 * 18 16 15 39 39 H 0.96994 * 119.99989 * 180.02562 * 22 21 19 40 40 H 1.08998 * 110.36873 * 85.25268 * 27 9 7 41 41 H 1.09005 * 110.36491 * 322.92676 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9981 -0.0066 5 16 3.9367 -0.5096 -0.0063 6 6 2.2812 -1.1453 0.0035 7 6 1.8395 -2.5492 0.0072 8 8 0.6522 -2.8131 0.0130 9 7 2.7506 -3.5423 0.0042 10 6 4.2102 -3.3662 -0.0036 11 6 4.8418 -4.7739 0.0218 12 6 3.7083 -5.6527 0.6136 13 1 3.6961 -5.5939 1.7019 14 7 3.8334 -7.0460 0.1651 15 6 3.0701 -7.9500 1.0358 16 6 3.2217 -9.3668 0.5452 17 8 3.8994 -9.6006 -0.4332 18 7 2.6051 -10.3743 1.1942 19 6 2.7425 -11.6631 0.7476 20 1 3.3453 -11.8711 -0.1241 21 6 2.1064 -12.7017 1.4164 22 7 1.3725 -12.4485 2.4768 23 14 2.2943 -14.4579 0.8084 24 1 3.1650 -14.4748 -0.3945 25 1 2.9076 -15.2884 1.8757 26 1 0.9591 -15.0067 0.4599 27 6 2.4486 -4.9853 0.0068 28 1 -0.3633 0.0031 1.0276 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8916 -0.5112 31 1 4.5205 -2.8046 0.8776 32 1 4.5151 -2.8393 -0.9078 33 1 5.7199 -4.7911 0.6674 34 1 5.0966 -5.1006 -0.9864 35 1 4.8020 -7.3242 0.1154 36 1 3.4468 -7.8760 2.0559 37 1 2.0169 -7.6698 1.0162 38 1 2.0634 -10.1874 1.9769 39 1 0.9288 -13.1736 2.9438 40 1 2.2838 -5.3402 -1.0105 41 1 1.5755 -5.1890 0.6267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752548936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:17 Heat of formation + Delta-G solvation = 13.470973 kcal Electronic energy + Delta-G solvation = -25999.818515 eV Core-core repulsion = 22042.705402 eV Total energy + Delta-G solvation = -3957.113113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36144 -40.36036 -38.51812 -37.77872 -34.95310 -33.87394 -33.66457 -31.43251 -31.11446 -29.58527 -28.32482 -27.34741 -26.36511 -24.48674 -23.39756 -22.49863 -20.83878 -19.81621 -19.26178 -19.00880 -17.95545 -17.60058 -17.05608 -16.42590 -16.08260 -15.80582 -15.34176 -14.93936 -14.64124 -14.51570 -14.26833 -13.86101 -13.79480 -13.50172 -13.47156 -13.37522 -13.25395 -12.90825 -12.73520 -12.39090 -12.05947 -11.94904 -11.78502 -11.53127 -11.36615 -11.13459 -11.03021 -10.62885 -10.38180 -10.37097 -10.26180 -10.24512 -10.14048 -9.56291 -9.10460 -8.58135 -8.24985 -8.01058 -6.45732 -3.86754 -0.69201 0.37450 1.05524 1.52596 2.34739 2.55535 3.13704 3.24841 3.31684 3.45909 3.83821 3.85570 3.92408 4.13602 4.16047 4.26268 4.41252 4.56964 4.88193 4.92642 4.95071 5.05981 5.15704 5.22805 5.23575 5.34556 5.44722 5.57222 5.62832 5.70518 5.71106 5.79014 5.87486 5.90389 6.20153 6.92180 7.02697 7.24297 7.46301 7.51766 7.57927 8.01710 8.55981 9.13573 9.49321 9.99953 10.71903 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.001915 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.910121 B =14621.379233 C =15306.643190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.102 3.898 3 N -0.250 5.250 4 N -0.264 5.264 5 S 0.422 5.578 6 C -0.291 4.291 7 C 0.616 3.384 8 O -0.511 6.511 9 N -0.609 5.609 10 C 0.087 3.913 11 C -0.128 4.128 12 C 0.073 3.927 13 H 0.063 0.937 14 N -0.655 5.655 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.900 5.900 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.117 3.883 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.357 0.643 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.090 0.910 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 23.937 -1.050 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 N -0.117 5.117 4 N -0.244 5.244 5 S 0.559 5.441 6 C -0.431 4.431 7 C 0.402 3.598 8 O -0.388 6.388 9 N -0.343 5.343 10 C -0.037 4.037 11 C -0.166 4.166 12 C -0.039 4.039 13 H 0.080 0.920 14 N -0.289 5.289 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.005 4.005 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.178 0.822 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.262 24.755 -2.061 25.392 hybrid contribution -0.933 -1.300 1.141 1.965 sum 4.329 23.455 -0.920 23.869 Atomic orbital electron populations 1.20553 0.83631 1.05123 1.04501 1.22989 1.00301 0.85095 0.96124 1.70701 0.97000 1.27997 1.15967 1.78770 1.09458 1.17181 1.19008 1.82754 1.09913 1.00286 1.51105 1.27665 0.98095 0.99745 1.17625 1.15960 0.85014 0.81343 0.77500 1.90849 1.15177 1.82658 1.50086 1.48220 1.06411 1.07189 1.72476 1.22274 0.80095 0.99346 1.02009 1.22785 0.97884 0.92020 1.03932 1.22660 0.94269 0.89454 0.97505 0.91964 1.59937 1.17922 0.98914 1.52140 1.21763 0.99607 0.92833 0.94194 1.19735 0.85343 0.85817 0.86593 1.90529 1.43818 1.84188 1.28276 1.41869 1.44139 1.06230 1.27620 1.19751 1.28972 0.81789 1.12399 0.87813 1.25281 0.96311 1.00479 0.95908 1.69617 1.31919 1.33652 1.18973 0.85793 0.78136 0.81601 0.78775 1.19192 1.20767 1.20712 1.22398 0.98335 0.76597 1.03185 0.89186 0.89764 0.87966 0.90785 0.90493 0.89268 0.88562 0.82185 0.93535 0.89427 0.77432 0.91865 0.89226 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.89 36.00 0.36 -0.27 16 2 C 0.10 1.02 7.00 -82.84 -0.58 0.44 16 3 N -0.25 -2.76 11.54 33.42 0.39 -2.37 16 4 N -0.26 -2.71 12.51 60.35 0.75 -1.95 16 5 S 0.42 3.08 19.63 -107.50 -2.11 0.97 16 6 C -0.29 -2.80 6.66 -35.95 -0.24 -3.04 16 7 C 0.62 6.89 7.84 -12.63 -0.10 6.79 16 8 O -0.51 -7.14 15.15 5.26 0.08 -7.06 16 9 N -0.61 -5.90 3.33 -171.87 -0.57 -6.47 16 10 C 0.09 0.57 5.25 -3.07 -0.02 0.56 16 11 C -0.13 -0.88 6.42 -24.90 -0.16 -1.04 16 12 C 0.07 0.72 3.32 -65.55 -0.22 0.50 16 13 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 14 N -0.66 -8.97 6.00 -105.71 -0.63 -9.60 16 15 C 0.05 0.78 6.04 -4.98 -0.03 0.75 16 16 C 0.44 9.84 7.82 -10.99 -0.09 9.76 16 17 O -0.58 -15.12 15.78 5.55 0.09 -15.03 16 18 N -0.56 -13.78 5.29 -10.97 -0.06 -13.84 16 19 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 23 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.12 1.28 6.56 -2.52 -0.02 1.26 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.92 6.47 -51.93 -0.34 0.58 16 31 H 0.07 0.37 7.02 -51.93 -0.36 0.01 16 32 H 0.08 0.40 7.17 -51.93 -0.37 0.03 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.36 4.92 8.23 -39.29 -0.32 4.60 16 36 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -33.15 360.29 -7.28 -40.43 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.01 Total: 9.33 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.33 Total: 7.88 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.60 Total: -57.61 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.17 Total: -22.09 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.11 Total: 0.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.15 -7.28 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752548936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.896 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds