Wall clock time and date at job start Tue Mar 31 2020 22:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31239 * 124.05558 * 2 1 4 4 N 1.27336 * 120.03852 * 180.34300 * 3 2 1 5 5 S 1.56635 * 109.74164 * 359.70947 * 4 3 2 6 6 C 1.38248 * 124.05754 * 179.82703 * 2 1 3 7 7 C 1.47171 * 128.47483 * 0.02562 * 6 2 1 8 8 O 1.21624 * 119.99910 * 359.70132 * 7 6 2 9 9 N 1.34776 * 119.99773 * 179.70173 * 7 6 2 10 10 C 1.47020 * 125.65281 * 359.95853 * 9 7 6 11 11 C 1.54316 * 107.27568 * 178.97789 * 10 9 7 12 12 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 13 13 H 1.08998 * 111.00511 * 277.42784 * 12 11 10 14 14 N 1.46902 * 111.00765 * 153.57597 * 12 11 10 15 15 C 1.46900 * 111.00366 * 161.35007 * 14 12 11 16 16 C 1.50693 * 109.47377 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99905 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00337 * 179.97438 * 16 15 14 19 19 C 1.37090 * 120.00252 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99989 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00193 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00235 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47255 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47510 * 119.99771 * 23 21 19 26 26 H 1.48504 * 109.47334 * 240.00145 * 23 21 19 27 27 C 1.47422 * 125.64527 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.46986 * 270.17127 * 1 2 3 29 29 H 1.08993 * 109.47207 * 30.17228 * 1 2 3 30 30 H 1.09001 * 109.46849 * 150.17298 * 1 2 3 31 31 H 1.09000 * 109.88493 * 59.55540 * 10 9 7 32 32 H 1.09003 * 109.87996 * 298.39630 * 10 9 7 33 33 H 1.09003 * 110.72312 * 219.44382 * 11 10 9 34 34 H 1.09003 * 110.72351 * 96.16743 * 11 10 9 35 35 H 1.00895 * 110.99890 * 37.39549 * 14 12 11 36 36 H 1.09003 * 109.46872 * 300.00565 * 15 14 12 37 37 H 1.09003 * 109.46695 * 60.00042 * 15 14 12 38 38 H 0.96998 * 119.99941 * 0.02562 * 18 16 15 39 39 H 0.96994 * 119.99989 * 180.02562 * 22 21 19 40 40 H 1.08998 * 110.36873 * 85.25268 * 27 9 7 41 41 H 1.09005 * 110.36491 * 322.92676 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9981 -0.0066 5 16 3.9367 -0.5096 -0.0063 6 6 2.2812 -1.1453 0.0035 7 6 1.8395 -2.5492 0.0072 8 8 0.6522 -2.8131 0.0130 9 7 2.7506 -3.5423 0.0042 10 6 4.2102 -3.3662 -0.0036 11 6 4.8418 -4.7739 0.0218 12 6 3.7083 -5.6527 0.6136 13 1 3.6961 -5.5939 1.7019 14 7 3.8334 -7.0460 0.1651 15 6 3.0701 -7.9500 1.0358 16 6 3.2217 -9.3668 0.5452 17 8 3.8994 -9.6006 -0.4332 18 7 2.6051 -10.3743 1.1942 19 6 2.7425 -11.6631 0.7476 20 1 3.3453 -11.8711 -0.1241 21 6 2.1064 -12.7017 1.4164 22 7 1.3725 -12.4485 2.4768 23 14 2.2943 -14.4579 0.8084 24 1 3.1650 -14.4748 -0.3945 25 1 2.9076 -15.2884 1.8757 26 1 0.9591 -15.0067 0.4599 27 6 2.4486 -4.9853 0.0068 28 1 -0.3633 0.0031 1.0276 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8916 -0.5112 31 1 4.5205 -2.8046 0.8776 32 1 4.5151 -2.8393 -0.9078 33 1 5.7199 -4.7911 0.6674 34 1 5.0966 -5.1006 -0.9864 35 1 4.8020 -7.3242 0.1154 36 1 3.4468 -7.8760 2.0559 37 1 2.0169 -7.6698 1.0162 38 1 2.0634 -10.1874 1.9769 39 1 0.9288 -13.1736 2.9438 40 1 2.2838 -5.3402 -1.0105 41 1 1.5755 -5.1890 0.6267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752548936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:16 Heat of formation + Delta-G solvation = -12.793888 kcal Electronic energy + Delta-G solvation = -26000.957444 eV Core-core repulsion = 22042.705402 eV Total energy + Delta-G solvation = -3958.252043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.09107 -41.16375 -40.12543 -38.82496 -36.24771 -35.60453 -34.38440 -33.26400 -32.13001 -30.31467 -29.24967 -28.07647 -27.74251 -25.97774 -24.37932 -23.19644 -21.65821 -21.11195 -20.47932 -19.88322 -19.68789 -18.42281 -17.96812 -17.44130 -17.18113 -16.82327 -16.68449 -16.36197 -15.96090 -15.56038 -15.33215 -15.14423 -14.78784 -14.70221 -14.26799 -14.09278 -13.98128 -13.87193 -13.75613 -13.53980 -13.43158 -13.17941 -12.85000 -12.79307 -12.59194 -12.39071 -12.11622 -12.06130 -11.84151 -11.50118 -11.43840 -11.11561 -10.95466 -10.82499 -10.33426 -10.00384 -9.88253 -9.40631 -8.45928 -5.94343 -1.40986 -0.29628 0.37949 0.77800 1.37454 1.43082 1.55793 1.57534 1.74771 2.06702 2.29829 2.75379 2.90559 3.16025 3.21903 3.42374 3.47402 3.59939 3.69176 4.06250 4.18833 4.21271 4.29605 4.33876 4.47019 4.51039 4.61045 4.63983 4.70815 4.74001 4.87392 4.95661 5.04777 5.13273 5.16083 5.42561 5.88576 6.09122 6.15216 6.41550 6.54049 6.60760 6.76121 7.13874 7.57902 8.12542 8.71617 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.001915 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.910121 B =14621.379233 C =15306.643190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.096 3.904 3 N -0.275 5.275 4 N -0.296 5.296 5 S 0.517 5.483 6 C -0.313 4.313 7 C 0.614 3.386 8 O -0.549 6.549 9 N -0.606 5.606 10 C 0.080 3.920 11 C -0.118 4.118 12 C 0.076 3.924 13 H 0.077 0.923 14 N -0.668 5.668 15 C 0.064 3.936 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.117 3.883 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.357 0.643 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.072 0.928 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.989 24.770 -0.460 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 N -0.140 5.140 4 N -0.276 5.276 5 S 0.654 5.346 6 C -0.454 4.454 7 C 0.401 3.599 8 O -0.429 6.429 9 N -0.339 5.339 10 C -0.044 4.044 11 C -0.156 4.156 12 C -0.035 4.035 13 H 0.095 0.905 14 N -0.302 5.302 15 C -0.068 4.068 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.215 4.215 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.006 4.006 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.178 0.822 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.809 25.627 -1.456 26.556 hybrid contribution -1.309 -1.535 0.919 2.217 sum 5.500 24.092 -0.537 24.717 Atomic orbital electron populations 1.20565 0.83002 1.05106 1.04983 1.23229 1.01027 0.85149 0.95792 1.70761 0.97288 1.28592 1.17341 1.78505 1.09510 1.19669 1.19902 1.82282 1.06859 0.97535 1.47925 1.27587 1.00170 0.98868 1.18744 1.16147 0.84713 0.82050 0.77008 1.90825 1.16797 1.83346 1.51890 1.48242 1.07735 1.06327 1.71632 1.22581 0.77961 0.99828 1.04010 1.22796 0.97637 0.90958 1.04218 1.22680 0.95044 0.87474 0.98315 0.90533 1.59845 1.17687 1.00342 1.52331 1.21590 1.00911 0.88846 0.95481 1.20858 0.83254 0.87866 0.85385 1.90497 1.45028 1.85396 1.29861 1.41956 1.45002 1.06079 1.28166 1.19697 1.30078 0.83686 1.12598 0.90192 1.26042 0.95640 1.03874 0.95898 1.69676 1.32127 1.34912 1.19482 0.84876 0.78226 0.77049 0.78229 1.19674 1.19614 1.19868 1.22272 0.98635 0.77687 1.02017 0.88456 0.88461 0.89169 0.88439 0.88670 0.86412 0.88842 0.82154 0.90916 0.88367 0.77012 0.91363 0.90940 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 9.89 71.24 0.70 -0.53 16 2 C 0.10 1.86 7.00 42.65 0.30 2.16 16 3 N -0.28 -5.79 11.54 -48.18 -0.56 -6.35 16 4 N -0.30 -5.55 12.51 37.02 0.46 -5.09 16 5 S 0.52 6.09 19.63 -56.49 -1.11 4.98 16 6 C -0.31 -5.61 6.66 24.62 0.16 -5.44 16 7 C 0.61 13.29 7.84 86.59 0.68 13.97 16 8 O -0.55 -15.63 15.15 -4.11 -0.06 -15.69 16 9 N -0.61 -10.76 3.33 -815.92 -2.71 -13.47 16 10 C 0.08 0.77 5.25 86.73 0.46 1.22 16 11 C -0.12 -1.22 6.42 31.78 0.20 -1.02 16 12 C 0.08 1.32 3.32 46.32 0.15 1.48 16 13 H 0.08 1.19 7.92 -2.39 -0.02 1.17 16 14 N -0.67 -17.30 6.00 -488.36 -2.93 -20.23 16 15 C 0.06 1.97 6.04 85.55 0.52 2.48 16 16 C 0.44 19.75 7.82 87.66 0.69 20.43 16 17 O -0.62 -32.71 15.78 -3.07 -0.05 -32.76 16 18 N -0.57 -28.60 5.29 -306.99 -1.62 -30.22 16 19 C -0.33 -18.42 9.68 84.04 0.81 -17.61 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 22 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 23 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 C 0.12 2.45 6.56 86.87 0.57 3.02 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.68 6.47 -2.39 -0.02 1.67 16 31 H 0.10 0.53 7.02 -2.39 -0.02 0.51 16 32 H 0.10 0.62 7.17 -2.39 -0.02 0.60 16 33 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.36 9.29 8.23 -89.70 -0.74 8.55 16 36 H 0.07 1.88 8.09 -2.39 -0.02 1.87 16 37 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.40 18.77 7.90 -92.71 -0.73 18.03 16 39 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.65 8.04 -2.38 -0.02 1.63 16 Total: -1.00 -73.78 360.29 -0.92 -74.70 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.36 Total: 28.74 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 5.71 Total: 19.84 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -7.08 Total: -124.21 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -0.11 Total: -48.45 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.11 Total: 4.98 kcal Total: -73.78 -0.92 -74.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752548936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.906 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds