Wall clock time and date at job start Tue Mar 31 2020 22:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31243 * 124.05710 * 2 1 4 4 N 1.27342 * 120.03800 * 180.36745 * 3 2 1 5 5 S 1.56641 * 109.73739 * 359.69527 * 4 3 2 6 6 C 1.38247 * 124.05313 * 179.82051 * 2 1 3 7 7 C 1.47165 * 128.47761 * 359.97065 * 6 2 1 8 8 O 1.21624 * 120.00020 * 359.70851 * 7 6 2 9 9 N 1.34775 * 120.00305 * 179.70700 * 7 6 2 10 10 C 1.46499 * 120.00328 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84829 * 336.19742 * 10 9 7 12 12 C 1.53781 * 113.69483 * 107.46198 * 10 9 7 13 13 C 1.53775 * 87.08385 * 139.99436 * 12 10 9 14 14 H 1.09002 * 113.69085 * 89.12851 * 13 12 10 15 15 N 1.46903 * 113.61428 * 220.02054 * 13 12 10 16 16 C 1.46893 * 110.99924 * 252.49294 * 15 13 12 17 17 C 1.50706 * 109.47176 * 179.97438 * 16 15 13 18 18 O 1.21295 * 119.99584 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99737 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00254 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99943 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00243 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46883 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47233 * 120.00270 * 24 22 20 27 27 H 1.48501 * 109.47364 * 240.00343 * 24 22 20 28 28 C 1.53779 * 113.61681 * 204.99802 * 10 9 7 29 29 H 1.09003 * 109.47605 * 270.18523 * 1 2 3 30 30 H 1.09007 * 109.46899 * 30.18009 * 1 2 3 31 31 H 1.08997 * 109.47565 * 150.18127 * 1 2 3 32 32 H 0.97006 * 120.00072 * 359.97438 * 9 7 6 33 33 H 1.09003 * 113.61414 * 25.44140 * 12 10 9 34 34 H 1.09001 * 113.61529 * 254.54429 * 12 10 9 35 35 H 1.00904 * 110.99923 * 128.54376 * 15 13 12 36 36 H 1.09001 * 109.46739 * 60.00281 * 16 15 13 37 37 H 1.09000 * 109.47767 * 300.00540 * 16 15 13 38 38 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 39 39 H 0.96999 * 120.00288 * 179.97438 * 23 22 20 40 40 H 1.09006 * 113.61397 * 105.38393 * 28 10 9 41 41 H 1.09000 * 113.68993 * 334.49262 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 -0.0071 5 16 3.9366 -0.5097 -0.0069 6 6 2.2811 -1.1454 0.0036 7 6 1.8393 -2.5492 0.0086 8 8 0.6520 -2.8130 0.0153 9 7 2.7503 -3.5424 0.0056 10 6 2.3105 -4.9398 0.0100 11 1 1.3088 -5.0670 0.4206 12 6 2.5213 -5.6583 -1.3332 13 6 2.9540 -6.8882 -0.5178 14 1 2.1292 -7.5490 -0.2510 15 7 4.0960 -7.6071 -1.0984 16 6 3.6702 -8.8836 -1.6874 17 6 4.8658 -9.5907 -2.2722 18 8 5.9645 -9.0814 -2.2044 19 7 4.7140 -10.7888 -2.8704 20 6 5.8017 -11.4322 -3.4018 21 1 6.7802 -10.9792 -3.3408 22 6 5.6454 -12.6677 -4.0181 23 7 4.4549 -13.2192 -4.0920 24 14 7.1273 -13.5441 -4.7429 25 1 8.3433 -12.7183 -4.5310 26 1 7.3000 -14.8593 -4.0752 27 1 6.9168 -13.7517 -6.1982 28 6 3.3466 -5.9099 0.6018 29 1 -0.3634 0.0033 1.0276 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5110 32 1 3.6972 -3.3320 -0.0002 33 1 3.3222 -5.2303 -1.9363 34 1 1.6006 -5.8097 -1.8966 35 1 4.8207 -7.7499 -0.4109 36 1 2.9396 -8.6949 -2.4740 37 1 3.2201 -9.5078 -0.9155 38 1 3.8353 -11.1958 -2.9249 39 1 4.3457 -14.0815 -4.5225 40 1 3.0921 -6.2645 1.6007 41 1 4.3735 -5.5519 0.5287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752713648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:20 Heat of formation + Delta-G solvation = 23.698299 kcal Electronic energy + Delta-G solvation = -25323.347056 eV Core-core repulsion = 21366.677433 eV Total energy + Delta-G solvation = -3956.669623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44163 -40.38729 -38.84943 -38.00926 -34.82066 -33.94141 -33.73674 -32.72082 -31.22445 -29.03335 -27.41569 -26.89423 -25.91534 -24.64412 -23.63388 -22.03522 -20.97531 -19.96251 -19.21500 -18.99108 -17.94060 -17.77299 -16.88419 -16.56401 -16.02337 -15.49372 -15.37347 -15.08097 -15.00175 -14.55078 -14.45065 -14.10064 -13.53998 -13.51965 -13.43194 -13.41448 -12.90421 -12.68509 -12.61150 -12.19703 -12.00768 -11.82279 -11.59387 -11.34560 -11.11385 -11.07137 -10.81815 -10.74926 -10.43009 -10.36609 -10.33048 -10.24970 -10.19273 -9.54910 -9.45224 -8.49643 -8.14237 -7.99109 -6.44516 -3.85456 -0.75393 0.32619 0.98529 1.46570 2.48753 2.52007 3.14258 3.25099 3.32111 3.41012 3.87538 4.06225 4.07871 4.15284 4.28621 4.34577 4.37932 4.70895 4.76868 4.83634 5.15158 5.16107 5.22409 5.27323 5.31277 5.45978 5.55209 5.65447 5.73328 5.74070 5.86347 5.89922 5.98225 6.18186 6.28875 6.89481 7.17786 7.19471 7.52731 7.57552 7.58839 8.03559 8.58042 9.15062 9.51368 10.02411 10.73204 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.001670 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.665502 B =16763.489604 C =17311.877550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.104 3.896 3 N -0.251 5.251 4 N -0.250 5.250 5 S 0.420 5.580 6 C -0.297 4.297 7 C 0.605 3.395 8 O -0.514 6.514 9 N -0.706 5.706 10 C 0.122 3.878 11 H 0.120 0.880 12 C -0.137 4.137 13 C 0.063 3.937 14 H 0.077 0.923 15 N -0.654 5.654 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.149 4.149 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.401 0.599 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.351 0.649 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.076 0.924 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 21.941 11.072 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 N -0.117 5.117 4 N -0.231 5.231 5 S 0.557 5.443 6 C -0.438 4.438 7 C 0.388 3.612 8 O -0.390 6.390 9 N -0.357 5.357 10 C 0.017 3.983 11 H 0.138 0.862 12 C -0.177 4.177 13 C -0.049 4.049 14 H 0.095 0.905 15 N -0.287 5.287 16 C -0.084 4.084 17 C 0.225 3.775 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.187 4.187 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.236 0.764 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.172 0.828 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.478 23.357 10.436 26.390 hybrid contribution -0.774 -1.778 0.293 1.961 sum -7.253 21.580 10.729 25.167 Atomic orbital electron populations 1.20556 0.83648 1.05169 1.04456 1.22998 1.00301 0.84993 0.96014 1.70645 0.96889 1.27975 1.16223 1.78903 1.09471 1.15630 1.19103 1.82623 1.09574 1.01591 1.50550 1.27777 0.98251 1.00031 1.17744 1.16445 0.86051 0.81944 0.76737 1.90821 1.15747 1.83014 1.49431 1.45869 1.09221 1.06185 1.74420 1.22538 0.99686 0.77433 0.98619 0.86207 1.23601 1.02252 0.95537 0.96302 1.22786 0.94174 0.93828 0.94064 0.90480 1.60201 1.09592 1.21111 1.37767 1.21746 0.97399 0.90050 0.99155 1.19817 0.89846 0.83126 0.84665 1.90520 1.26817 1.66794 1.62762 1.41875 1.11055 1.16782 1.50283 1.19754 0.89864 1.00674 1.32613 0.87854 1.25272 0.97961 0.97018 0.97730 1.69618 1.21928 1.18301 1.44400 0.85798 0.81089 0.78992 0.78448 1.19215 1.20767 1.20728 1.23649 0.99992 0.96223 0.98882 0.89212 0.89756 0.87938 0.76393 0.88591 0.90991 0.82839 0.89555 0.93730 0.77448 0.91899 0.90482 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 9.89 36.00 0.36 -0.19 16 2 C 0.10 0.93 7.00 -82.84 -0.58 0.35 16 3 N -0.25 -2.58 11.54 33.42 0.39 -2.20 16 4 N -0.25 -2.44 12.51 60.35 0.75 -1.68 16 5 S 0.42 2.81 23.05 -107.50 -2.48 0.33 16 6 C -0.30 -2.48 6.81 -35.96 -0.24 -2.72 16 7 C 0.60 5.55 7.80 -12.64 -0.10 5.45 16 8 O -0.51 -6.01 14.50 5.26 0.08 -5.93 16 9 N -0.71 -5.28 5.35 -54.18 -0.29 -5.58 16 10 C 0.12 1.00 4.24 -67.12 -0.28 0.71 16 11 H 0.12 1.04 7.46 -51.93 -0.39 0.65 16 12 C -0.14 -1.36 7.68 -25.92 -0.20 -1.56 16 13 C 0.06 0.65 4.14 -66.90 -0.28 0.38 16 14 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 15 N -0.65 -9.48 6.18 -107.13 -0.66 -10.14 16 16 C 0.05 0.82 6.01 -4.98 -0.03 0.79 16 17 C 0.44 10.07 7.82 -10.98 -0.09 9.99 16 18 O -0.58 -15.43 15.78 5.54 0.09 -15.34 16 19 N -0.56 -14.01 5.29 -10.96 -0.06 -14.06 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 24 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.15 -1.17 7.40 -25.92 -0.19 -1.36 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.79 6.48 -51.93 -0.34 0.46 16 32 H 0.40 2.20 8.16 -40.82 -0.33 1.86 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.35 5.21 8.25 -39.29 -0.32 4.88 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.73 8.12 -51.93 -0.42 0.31 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -33.20 368.77 -7.80 -41.00 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.00 Total: 11.86 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.88 Total: 3.93 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.85 Total: -57.17 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.16 Total: -21.27 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.48 Total: 0.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.20 -7.80 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752713648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.701 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds