Wall clock time and date at job start Tue Mar 31 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31243 * 124.05710 * 2 1 4 4 N 1.27342 * 120.03800 * 180.36745 * 3 2 1 5 5 S 1.56641 * 109.73739 * 359.69527 * 4 3 2 6 6 C 1.38247 * 124.05313 * 179.82051 * 2 1 3 7 7 C 1.47165 * 128.47761 * 359.97065 * 6 2 1 8 8 O 1.21624 * 120.00020 * 359.70851 * 7 6 2 9 9 N 1.34775 * 120.00305 * 179.70700 * 7 6 2 10 10 C 1.46499 * 120.00328 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84829 * 336.19742 * 10 9 7 12 12 C 1.53781 * 113.69483 * 107.46198 * 10 9 7 13 13 C 1.53775 * 87.08385 * 139.99436 * 12 10 9 14 14 H 1.09002 * 113.69085 * 89.12851 * 13 12 10 15 15 N 1.46903 * 113.61428 * 220.02054 * 13 12 10 16 16 C 1.46893 * 110.99924 * 252.49294 * 15 13 12 17 17 C 1.50706 * 109.47176 * 179.97438 * 16 15 13 18 18 O 1.21295 * 119.99584 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99737 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00254 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99943 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00243 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46883 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47233 * 120.00270 * 24 22 20 27 27 H 1.48501 * 109.47364 * 240.00343 * 24 22 20 28 28 C 1.53779 * 113.61681 * 204.99802 * 10 9 7 29 29 H 1.09003 * 109.47605 * 270.18523 * 1 2 3 30 30 H 1.09007 * 109.46899 * 30.18009 * 1 2 3 31 31 H 1.08997 * 109.47565 * 150.18127 * 1 2 3 32 32 H 0.97006 * 120.00072 * 359.97438 * 9 7 6 33 33 H 1.09003 * 113.61414 * 25.44140 * 12 10 9 34 34 H 1.09001 * 113.61529 * 254.54429 * 12 10 9 35 35 H 1.00904 * 110.99923 * 128.54376 * 15 13 12 36 36 H 1.09001 * 109.46739 * 60.00281 * 16 15 13 37 37 H 1.09000 * 109.47767 * 300.00540 * 16 15 13 38 38 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 39 39 H 0.96999 * 120.00288 * 179.97438 * 23 22 20 40 40 H 1.09006 * 113.61397 * 105.38393 * 28 10 9 41 41 H 1.09000 * 113.68993 * 334.49262 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 -0.0071 5 16 3.9366 -0.5097 -0.0069 6 6 2.2811 -1.1454 0.0036 7 6 1.8393 -2.5492 0.0086 8 8 0.6520 -2.8130 0.0153 9 7 2.7503 -3.5424 0.0056 10 6 2.3105 -4.9398 0.0100 11 1 1.3088 -5.0670 0.4206 12 6 2.5213 -5.6583 -1.3332 13 6 2.9540 -6.8882 -0.5178 14 1 2.1292 -7.5490 -0.2510 15 7 4.0960 -7.6071 -1.0984 16 6 3.6702 -8.8836 -1.6874 17 6 4.8658 -9.5907 -2.2722 18 8 5.9645 -9.0814 -2.2044 19 7 4.7140 -10.7888 -2.8704 20 6 5.8017 -11.4322 -3.4018 21 1 6.7802 -10.9792 -3.3408 22 6 5.6454 -12.6677 -4.0181 23 7 4.4549 -13.2192 -4.0920 24 14 7.1273 -13.5441 -4.7429 25 1 8.3433 -12.7183 -4.5310 26 1 7.3000 -14.8593 -4.0752 27 1 6.9168 -13.7517 -6.1982 28 6 3.3466 -5.9099 0.6018 29 1 -0.3634 0.0033 1.0276 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5110 32 1 3.6972 -3.3320 -0.0002 33 1 3.3222 -5.2303 -1.9363 34 1 1.6006 -5.8097 -1.8966 35 1 4.8207 -7.7499 -0.4109 36 1 2.9396 -8.6949 -2.4740 37 1 3.2201 -9.5078 -0.9155 38 1 3.8353 -11.1958 -2.9249 39 1 4.3457 -14.0815 -4.5225 40 1 3.0921 -6.2645 1.6007 41 1 4.3735 -5.5519 0.5287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752713648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:19 Heat of formation + Delta-G solvation = -3.014339 kcal Electronic energy + Delta-G solvation = -25324.505403 eV Core-core repulsion = 21366.677433 eV Total energy + Delta-G solvation = -3957.827970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10508 -41.13296 -40.15532 -39.32387 -36.14052 -35.51808 -34.39864 -33.74782 -33.19274 -29.70423 -28.38200 -28.03962 -26.66874 -26.14226 -24.65952 -22.81973 -21.66954 -21.16212 -20.58164 -19.88391 -19.60355 -18.48449 -17.92983 -17.31053 -17.22233 -16.82973 -16.43353 -16.22541 -15.95136 -15.81050 -15.67423 -15.18802 -15.06807 -14.50163 -14.22942 -14.11457 -13.95566 -13.53593 -13.49833 -13.34822 -13.25067 -13.13128 -12.87114 -12.58541 -12.40211 -12.21996 -12.12002 -11.93386 -11.54159 -11.49659 -11.48625 -11.13503 -10.97674 -10.81308 -10.32106 -10.13584 -10.00425 -9.29042 -8.46077 -5.94654 -1.40468 -0.27664 0.36296 0.79170 1.37325 1.42800 1.56736 1.79075 1.84869 2.06870 2.30049 2.78258 3.00344 3.21662 3.44342 3.50135 3.51748 3.66447 3.70067 3.96432 4.07535 4.22991 4.33592 4.48747 4.57937 4.63904 4.66566 4.75739 4.83032 4.87845 4.98565 5.09386 5.13343 5.20036 5.41997 5.48544 5.94260 6.16229 6.27907 6.46925 6.53767 6.61103 6.91896 7.13696 7.57880 8.12799 8.71480 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.001670 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.665502 B =16763.489604 C =17311.877550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.097 3.903 3 N -0.276 5.276 4 N -0.285 5.285 5 S 0.498 5.502 6 C -0.313 4.313 7 C 0.607 3.393 8 O -0.542 6.542 9 N -0.697 5.697 10 C 0.131 3.869 11 H 0.120 0.880 12 C -0.139 4.139 13 C 0.057 3.943 14 H 0.089 0.911 15 N -0.667 5.667 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.134 4.134 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.348 0.652 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.094 0.906 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.951 21.907 11.739 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 N -0.141 5.141 4 N -0.266 5.266 5 S 0.634 5.366 6 C -0.453 4.453 7 C 0.391 3.609 8 O -0.420 6.420 9 N -0.348 5.348 10 C 0.026 3.974 11 H 0.137 0.863 12 C -0.179 4.179 13 C -0.053 4.053 14 H 0.107 0.893 15 N -0.300 5.300 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.172 4.172 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.249 0.751 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.168 0.832 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.502 23.342 11.112 26.657 hybrid contribution -0.722 -1.749 0.093 1.895 sum -7.225 21.592 11.205 25.377 Atomic orbital electron populations 1.20586 0.82745 1.05206 1.05089 1.23285 1.01107 0.84986 0.95753 1.70693 0.97147 1.28805 1.17460 1.78660 1.09620 1.18012 1.20267 1.82271 1.07326 0.99152 1.47804 1.27781 0.99632 0.99603 1.18315 1.16510 0.85789 0.82337 0.76257 1.90809 1.16909 1.83466 1.50798 1.45780 1.09657 1.05716 1.73638 1.22390 0.99914 0.77638 0.97438 0.86255 1.23585 1.01668 0.95720 0.96945 1.22930 0.93277 0.93877 0.95236 0.89275 1.60184 1.11194 1.20003 1.38576 1.21596 0.94351 0.90867 1.00021 1.20935 0.91224 0.82284 0.83026 1.90487 1.29115 1.67532 1.63803 1.41958 1.10595 1.17634 1.51011 1.19705 0.89915 1.01881 1.34721 0.90263 1.26039 1.00722 0.97117 0.97497 1.69676 1.23252 1.18716 1.44534 0.84873 0.77576 0.77882 0.78020 1.19735 1.19614 1.19758 1.23574 1.00103 0.94741 0.98821 0.88265 0.88726 0.88768 0.75132 0.89677 0.91356 0.83196 0.88245 0.91313 0.76998 0.91342 0.88747 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.89 71.23 0.70 -0.33 16 2 C 0.10 1.68 7.00 42.65 0.30 1.98 16 3 N -0.28 -5.55 11.54 -48.19 -0.56 -6.11 16 4 N -0.28 -5.30 12.51 37.02 0.46 -4.83 16 5 S 0.50 5.82 23.05 -56.49 -1.30 4.52 16 6 C -0.31 -4.84 6.81 24.62 0.17 -4.67 16 7 C 0.61 10.34 7.80 86.59 0.68 11.01 16 8 O -0.54 -12.21 14.50 -4.11 -0.06 -12.27 16 9 N -0.70 -9.08 5.35 -443.56 -2.37 -11.45 16 10 C 0.13 1.87 4.24 45.52 0.19 2.06 16 11 H 0.12 1.82 7.46 -2.39 -0.02 1.80 16 12 C -0.14 -2.54 7.68 31.12 0.24 -2.30 16 13 C 0.06 1.06 4.14 45.44 0.19 1.25 16 14 H 0.09 1.49 7.87 -2.39 -0.02 1.48 16 15 N -0.67 -18.31 6.18 -492.86 -3.05 -21.36 16 16 C 0.06 2.04 6.01 85.56 0.51 2.55 16 17 C 0.44 20.08 7.82 87.66 0.69 20.77 16 18 O -0.62 -33.36 15.78 -3.08 -0.05 -33.41 16 19 N -0.57 -28.88 5.29 -306.98 -1.62 -30.50 16 20 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 24 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 C -0.13 -1.74 7.40 31.12 0.23 -1.51 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 1.44 6.48 -2.39 -0.02 1.43 16 32 H 0.41 3.53 8.16 -92.70 -0.76 2.78 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.35 9.87 8.25 -89.69 -0.74 9.13 16 36 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 38 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 39 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 40 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 Total: -1.00 -72.18 368.77 -2.17 -74.35 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -1.11 Total: 32.77 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.18 Total: 12.72 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.86 Total: -123.12 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.11 Total: -45.67 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.30 Total: 4.52 kcal Total: -72.18 -2.17 -74.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752713648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.334 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds